TCONS_00070065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070065
Unique NameTCONS_00070065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070065 ID=TCONS_00070065|Name=TCONS_00070065|organism=Clytia hemisphaerica|type=transcript|length=585bp
atttaaaacagcgatgtaaaaattatttttatttcttgacTTTAAATAAG
AAAGTTATAATTCCGTTACCAAAAAAAACTAGGAGTAAATTTTTATACAT
TAAAAAACGAGTTTTATTATCTTAAATCTACCGTCATAAAATATTCATCT
TAAATTCCCAATGTCTCCTCAAAACCAGAATTGTTCGTAGATGAGGTCAT
TCCAAGCAGGACATCATTTCAAGGGCTATCCTCCCCATAATGACTCCATC
ATCATTAACTATAATTCCATTCATGTCAACAACAATCCATTGCGAAAAGG
TTGTTCTCCATAGAAATCGCACCCAAAATGAAAAGGTTCGTCTCCAATGA
ATTTTCAACCAATATGTACTACAGCATGCGTTTCAATctcatttgattgt
ttttaaatCTCTGGAGTAAAACCCGTACTTCGGGTTCACTGGCATCCATG
GAATCTAAGTCGACCAGATATGAAGTGGTCGTTTCAAATAATGATCTGCA
CATCGATAGTCTGGAATGAAAAGAAGTGTGATGATGGTTGCGCAAAACTG
CTACGTATAAAAAACTACATCAACCATTTAAGTGC
Run BLAST on NCBI

transcript from alignment at scaffold_513:11977..12717+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070065 ID=TCONS_00070065|Name=TCONS_00070065|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at scaffold_513:11977..12717+ (Clytia hemisphaerica)
atttaaaacagcgatgtaaaaattatttttatttcttgacTTTAAATAAG
AAAGTTATAATTCCGTTACCAAAAAAAACTAGGAGTAAATTTTTATACAT
TAAAAAACGAGTTTTATTATCTTAAATCTACCGTCATAAAATATTCATCT
TAAATTCCCAATGTCTCCTCAAAACCAGAATTGTTCGTAGATGAGGTCAT
TCCAAGCAGGACATCATTTCAAGGGCTATCCTCCCCATAATGACTCCATC
ATCATTAACTATAATTCCATTCATGTCAACAACAATCCATTGCGAAAAGG
TTGTTCTCCATAGAAATCGCACCCAAAATGAAAAGGTTCGTCTCCAATGA
ATTTTCAACCAATATGTACTACAGCATGCGTTTCAATctcatttgattgt
ttttaaatCTCTGGAGTAAAACCCGTACTTCGGGTTCACTGGCATCCATG
GAATCTAAGTCGACCAGATATGAAGTGGTCGTTTCAAATAATGATCTGCA
CATTGATAGTCTATAATGAAAAGTAGTGTGATGGGTtacaaattgttttt
gaaattagCCAAAATTTTTGGCAAAAGCTTTTTAGACAATCTACgcatgg
caaacgatagcccttaACCCAacaagcataaatatggtacaATATCATAT
TCTACACATCGATAGTCTGGAATGAAAAGAAGTGTGATGATGGTTGCGCA
AAACTGCTACGTATAAAAAACTACATCAACCATTTAAGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043626XLOC_043626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070065-exon-scaffold_513-1491911889:11977..12477TCONS_00070065-exon-scaffold_513-1491911889:11977..12477Clytia hemisphaericaexon
TCONS_00070065-exon-scaffold_513-1510915933:11977..12477TCONS_00070065-exon-scaffold_513-1510915933:11977..12477Clytia hemisphaericaexon
TCONS_00070065-exon-scaffold_513-1575043694:11977..12477TCONS_00070065-exon-scaffold_513-1575043694:11977..12477Clytia hemisphaericaexon
TCONS_00070065-exon-scaffold_513-1491911889:12634..12717TCONS_00070065-exon-scaffold_513-1491911889:12634..12717Clytia hemisphaericaexon
TCONS_00070065-exon-scaffold_513-1510915933:12634..12717TCONS_00070065-exon-scaffold_513-1510915933:12634..12717Clytia hemisphaericaexon
TCONS_00070065-exon-scaffold_513-1575043694:12634..12717TCONS_00070065-exon-scaffold_513-1575043694:12634..12717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:11977..12717 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.9488	22.2084	54.2515	57.6245	0.341262	0	0	0	4.09887	2.99146	0	0.933303	1.57862	2.96587	6.1304	5.67514	9.36579	8.67613	1.9629	3.46561	8.56414	9.09908	19.7045	14.793	0	0	3.59337	4.98526	11.5648	11.7571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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