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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070058 ID=TCONS_00070058|Name=TCONS_00070058|organism=Clytia hemisphaerica|type=transcript|length=1997bp
AATCCTGTATAATTACATATAACCCAAGATAGCAAATGGAAaagcaaaaa
ggtctattgcccCTAAGGTATGTGGATAGTTTCATTGTTCCACATTTCTA
GTAAATTCTCCAGCCATTGCCATTCCTTCCCTGATGATATTTGTTGAAGA
AATTTTGGGATCAATTTATCCACCAACGCTTTACAGCACCCCTTTAAATA
GTGTATATTACATTCTCAGAGATTTTAAACCGGAAAAGAAGCAAATGAAA
TGATTCTCCAGTTTCTAGAAGGCCAAGATTAAGGGCAAGGGCAATTTTTC
CTGTCTTCCTTCTTCTCTCAGCccccattttgttttgaaggaatgtatat
gaaaaaattattgccaaaaatgatttttaaaaagaagtcCCAGAAACCTT
AAGTTCTAGCTTCATCCAACATTagtttttcatccaacattaGTTTTTCA
TCCAGCAATCCATCCAACCCAACCTTTACATAATtatacattgaaaaaaa
ttttttcctctAATGACATCATGATTTGAGACTTGAAGCTTGGGTTTTCT
GAGCCTCAAGCAGTGGTGTGATTTAGCTGGCAGATGTGGAAAACATTAAG
CTCAcataaaaattagaaataatatAGCAAAAAATGCTTGTGTATATAAA
TGCTATGAGAATGAGCTGTGTAGGTATTATCTGTCTCTTGTTAACAGTTT
AACTTGAGTGAAAAGAGTCTAGTCAGATTGAGTTCCTATGCCTAACTTTA
GCTAATTCTAAAGCCTAGATTGAAGTCCTCAACAGCAAACTTAAAGAAAT
TTACTAATCAAAAGATAAGTTCAAAGTAGCAAATTATTTATGATTGTTTC
ATTCTTTATTCTCTTTTCCAAATGcttagttttcaaaaaaacaactgATA
ACTTTGTGTTCAAAGATGTCCGCAGAGAATGAGGAGCAGATTTTCGAAGT
GTTACCAAAGACTGGATTACTTTACACAGAACAATCAGTCATGCCTGTGC
TTTGTAAACCAAAAATTTTACCATTGAAATCTGTCACTTTGGAGAAATTA
GAGAAAATGCAACAAGAGAGTCAAGAAATGTTAAAGcaacaagaagaaga
aaacaaactACGTGAACAAATGATTGAACAGACCGAAGCAGTAGATTCTG
GTAATAGCGGCAATGGGGGTGGTGCCCCTGATGTATTGACACTATAAAAG
AATTAACGTTTCATGTTTAATGTAAATTTGTAAATAGATAAAATGCAAAA
TGGCAGTCACATTGATTTTTTCGAAGTATTATCACTCTACtgtttttttg
atgaaaaaactttttatgaacAACTTGAGAATACAGCTGAGCTTGAATTT
CAAGCATTTTAGGAGTTTAATCAGCAAAAATCGGGTATAAAACCTAAAGT
AAATCAATTTGCACCTAAGATTTAGTACCTGAGCCTATACAGGACAGAAc
atgaggctcaaagtgccagaAAATATTACCAGTAACTCAAAGTCTATATT
TATAATAAAGCTAAAAGATAATGCTTATGTGTCAACCCTCAAAGCGTAAG
GAGTATTTATTAAGAGTTCATAGTTTACCAGGAAGGAAtgactttcaaaa
tgtcattttatcgTAAGAAAATCAGCAATGAAGTGACTATGGTATTTTAA
ACTCTAAACCTTGTTCCTCACACTTTAAGGGTTGATAAGCATTAAAGGTT
TTTAGGTTTAGCATTATTTTTACTTATTTTGATTGGCATTTGATTGATAA
TTCATTAAATAaatcagatatgaatttttaaaacctttttaaattgtaAA
TAAGACACAATGTGCAATGTTTGAACTGGATgtgaactttttattttgtt
gattttctttttcgtttttaccAATTTAAGTTAAGGTTTAGATAATATTT
ATTTGAAACTAAACATACAAAGTCAAGCCTTTATTTAAactgagtctgct
aaattgcgtgggttgcgtgggtgcgtgggtcaatatttttgcatgGG Run BLAST on NCBI transcript from alignment at scaffold_512:162691..164687 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070058 ID=TCONS_00070058|Name=TCONS_00070058|organism=Clytia hemisphaerica|type=transcript|length=1997bp|location=Sequence derived from alignment at scaffold_512:162691..164687 (Clytia hemisphaerica)
CCcatgcaaaaatattgacccacgcacccacgcaacccacgcaatttagc
agactcagtTTAAATAAAGGCTTGACTTTGTATGTTTAGTTTCAAATAAA
TATTATCTAAACCTTAACTTAAATTggtaaaaacgaaaaagaaaatcaac
aaaataaaaagttcacATCCAGTTCAAACATTGCACATTGTGTCTTATTt
acaatttaaaaaggttttaaaaattcatatctgattTATTTAATGAATTA
TCAATCAAATGCCAATCAAAATAAGTAAAAATAATGCTAAACCTAAAAAC
CTTTAATGCTTATCAACCCTTAAAGTGTGAGGAACAAGGTTTAGAGTTTA
AAATACCATAGTCACTTCATTGCTGATTTTCTTAcgataaaatgacattt
tgaaagtcaTTCCTTCCTGGTAAACTATGAACTCTTAATAAATACTCCTT
ACGCTTTGAGGGTTGACACATAAGCATTATCTTTTAGCTTTATTATAAAT
ATAGACTTTGAGTTACTGGTAATATTTtctggcactttgagcctcatgTT
CTGTCCTGTATAGGCTCAGGTACTAAATCTTAGGTGCAAATTGATTTACT
TTAGGTTTTATACCCGATTTTTGCTGATTAAACTCCTAAAATGCTTGAAA
TTCAAGCTCAGCTGTATTCTCAAGTTgttcataaaaagttttttcatcaa
aaaaacaGTAGAGTGATAATACTTCGAAAAAATCAATGTGACTGCCATTT
TGCATTTTATCTATTTACAAATTTACATTAAACATGAAACGTTAATTCTT
TTATAGTGTCAATACATCAGGGGCACCACCCCCATTGCCGCTATTACCAG
AATCTACTGCTTCGGTCTGTTCAATCATTTGTTCACGTagtttgttttct
tcttcttgttgCTTTAACATTTCTTGACTCTCTTGTTGCATTTTCTCTAA
TTTCTCCAAAGTGACAGATTTCAATGGTAAAATTTTTGGTTTACAAAGCA
CAGGCATGACTGATTGTTCTGTGTAAAGTAATCCAGTCTTTGGTAACACT
TCGAAAATCTGCTCCTCATTCTCTGCGGACATCTTTGAACACAAAGTTAT
cagttgtttttttgaaaactaagCATTTGGAAAAGAGAATAAAGAATGAA
ACAATCATAAATAATTTGCTACTTTGAACTTATCTTTTGATTAGTAAATT
TCTTTAAGTTTGCTGTTGAGGACTTCAATCTAGGCTTTAGAATTAGCTAA
AGTTAGGCATAGGAACTCAATCTGACTAGACTCTTTTCACTCAAGTTAAA
CTGTTAACAAGAGACAGATAATACCTACACAGCTCATTCTCATAGCATTT
ATATACACAAGCATTTTTTGCTatattatttctaatttttatgTGAGCTT
AATGTTTTCCACATCTGCCAGCTAAATCACACCACTGCTTGAGGCTCAGA
AAACCCAAGCTTCAAGTCTCAAATCATGATGTCATTagaggaaaaaattt
ttttcaatgtataATTATGTAAAGGTTGGGTTGGATGGATTGCTGGATGA
AAAACtaatgttggatgaaaaactAATGTTGGATGAAGCTAGAACTTAAG
GTTTCTGGgacttctttttaaaaatcatttttggcaataattttttcata
tacattccttcaaaacaaaatggggGCTGAGAGAAGAAGGAAGACAGGAA
AAATTGCCCTTGCCCTTAATCTTGGCCTTCTAGAAACTGGAGAATCATTT
CATTTGCTTCTTTTCCGGTTTAAAATCTCTGAGAATGTAATATACACTAT
TTAAAGGGGTGCTGTAAAGCGTTGGTGGATAAATTGATCCCAAAATTTCT
TCAACAAATATCATCAGGGAAGGAATGGCAATGGCTGGAGAATTTACTAG
AAATGTGGAACAATGAAACTATCCACATACCTTAGgggcaatagaccttt
ttgcttTTCCATTTGCTATCTTGGGTTATATGTAATTATACAGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070058-exon-scaffold_512-1491911889:162691..164687 | TCONS_00070058-exon-scaffold_512-1491911889:162691..164687 | Clytia hemisphaerica | exon |
| TCONS_00070058-exon-scaffold_512-1510915933:162691..164687 | TCONS_00070058-exon-scaffold_512-1510915933:162691..164687 | Clytia hemisphaerica | exon |
| TCONS_00070058-exon-scaffold_512-1575043694:162691..164687 | TCONS_00070058-exon-scaffold_512-1575043694:162691..164687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:162691..164687 . |
Blast
The following BLAST results are available for this feature:
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