|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070056 ID=TCONS_00070056|Name=TCONS_00070056|organism=Clytia hemisphaerica|type=transcript|length=1711bp
ACGCAAACGAGATGCAGACGGAAACGTAGAGCGCTACAAAGCGAGATTAG
TGGCTCAAGGATTTACGCAGAAAAACGGTATCGATTATGACGAGACATTC
AGTCCTGTCGTGAGATTCGAATCGATTAGAACAATAATTGCACTAGCTGC
AAAATACAAACTTCGTTTGCACCAAATTGACGTAACAACCGCATTTCTTA
ACGGAACTCTAGAAGAAGACATTTACATGAAACAACCCGAAGGGTTCGAA
GTCGAAGGACAAAAACACATGGTTTGCAAATTGAAGAAAAGCATTTATGG
TCTCAAGCAATCACCACGTTGTTGGAATCAAGCCTTAGATGAGCAACTCA
AGAAAATGGGATTCGTACCTTCAATGAACGATCCATGTATTTACACACTC
AATACAGGAGGAGAAGTGTTCATTCTAGCCGTTTACGTCGATGATATCAT
ACTCGGAGGAAAATCGACCGAAAGGATTCAACAAATCATCAACGAAATTG
CTCAACGATTTGACGTAAAGGACATGGGAGaactgaaatattttcttgGA
GTTAAAATAGTCTACTTAGACGATGGAAGTATTTGGATTGGTCAACCATC
GTACATTAAAGCAGTCCTTCACAAGTTCAACatggaaaattcaaaatctg
ttGCAACTCCAGTCGAAACAGGGACAAAGCTAATGAAAGCAACAGACAAT
GACAAGTTATTTGACCAAGAAATGTATCAATCTGCAGTTGGATGTTTGCT
CTATCTATCGACAAAGACTCGACCAGATATCGCATTTGCCGTTAGCAACG
TCGCAAAGTTTACAGCAAAGCCAACGATTGATCATTGGACCGCCGTCAAA
AGAATCATGAGATACCTTAACGGGACTATCTATTGTGGATTACGCTATTA
CGGTGAAACGCAACTTGTTGGATACTCGGATGCTGATTGGGCTGGAGATC
TCAACGATAGAAAGTCAACTTCTGGCTACGTTTACAAAATCAGTGGAGCT
GCAGTCAGCTGGATGAGTAAGAAACAAACATGTGTAGCGTTATCAACTGC
CGAAGCAGAGTACATGGCCTTGTCAATGGCATCTCAAGAAGCAATTTGGC
TGAGGCGACTTCTTCACGACCTTAACGAGAAAGTAGATGGACCGATTACT
ATCTATGAAGACAACCAATCAACGATCTGTATGgcagaaaatccgaaatt
tCACGGACGTGCGAAACATATCGATATTAAACATCATTACGTCCGTAACC
AGGTTCACGAAAAGAACATCGAATTGAAGTATTGTCCGAGTGAGTACATG
GTAGCTGACATGTTAACAAAGGGACTGACCCGTGTTCAATTCAACAAACT
GAAAGACATGATCGGAATTCACGATCTGACAGACAGCGAGTGAGGAGGAG
TGTTGAAATTCAGATGCACATAAATTCACAGACACTCTAGTCTTAAGATC
TAGAACATTCATGAAGAACATTCCAGACGATAGGACTGGACCATCAAAGA
ACTTTATGTACATACTAGAATGTTCCATACTGAACATAGAACATTCTATT
TCATTCTATTTAGGTTACCATTTTGTTGTCTAGAACATTCTAGCTATCTT
CTAGTTTCTAGACTATTTTTCTAGACCATTCTTTGTAAATAGTATATAAG
ACTGACTTGTAACTGATTTCATTAGAGTTTGAGTTTACTTGAAAGACTGA
TCATAACCAAC Run BLAST on NCBI protein sequence of TCONS_00070056-protein >TCONS_00070056-protein ID=TCONS_00070056-protein|Name=TCONS_00070056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
RKRDADGNVERYKARLVAQGFTQKNGIDYDETFSPVVRFESIRTIIALAA
KYKLRLHQIDVTTAFLNGTLEEDIYMKQPEGFEVEGQKHMVCKLKKSIYG
LKQSPRCWNQALDEQLKKMGFVPSMNDPCIYTLNTGGEVFILAVYVDDII
LGGKSTERIQQIINEIAQRFDVKDMGELKYFLGVKIVYLDDGSIWIGQPS
YIKAVLHKFNMENSKSVATPVETGTKLMKATDNDKLFDQEMYQSAVGCLL
YLSTKTRPDIAFAVSNVAKFTAKPTIDHWTAVKRIMRYLNGTIYCGLRYY
GETQLVGYSDADWAGDLNDRKSTSGYVYKISGAAVSWMSKKQTCVALSTA
EAEYMALSMASQEAIWLRRLLHDLNEKVDGPITIYEDNQSTICMAENPKF
HGRAKHIDIKHHYVRNQVHEKNIELKYCPSEYMVADMLTKGLTRVQFNKL
KDMIGIHDLTDSE Run BLAST on NCBI transcript from alignment at scaffold_512:108909..110619 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070056 ID=TCONS_00070056|Name=TCONS_00070056|organism=Clytia hemisphaerica|type=transcript|length=1711bp|location=Sequence derived from alignment at scaffold_512:108909..110619 (Clytia hemisphaerica)
GTTGGTTATGATCAGTCTTTCAAGTAAACTCAAACTCTAATGAAATCAGT
TACAAGTCAGTCTTATATACTATTTACAAAGAATGGTCTAGAAAAATAGT
CTAGAAACTAGAAGATAGCTAGAATGTTCTAGACAACAAAATGGTAACCT
AAATAGAATGAAATAGAATGTTCTATGTTCAGTATGGAACATTCTAGTAT
GTACATAAAGTTCTTTGATGGTCCAGTCCTATCGTCTGGAATGTTCTTCA
TGAATGTTCTAGATCTTAAGACTAGAGTGTCTGTGAATTTATGTGCATCT
GAATTTCAACACTCCTCCTCACTCGCTGTCTGTCAGATCGTGAATTCCGA
TCATGTCTTTCAGTTTGTTGAATTGAACACGGGTCAGTCCCTTTGTTAAC
ATGTCAGCTACCATGTACTCACTCGGACAATACTTCAATTCGATGTTCTT
TTCGTGAACCTGGTTACGGACGTAATGATGTTTAATATCGATATGTTTCG
CACGTCCGTGaaatttcggattttctgcCATACAGATCGTTGATTGGTTG
TCTTCATAGATAGTAATCGGTCCATCTACTTTCTCGTTAAGGTCGTGAAG
AAGTCGCCTCAGCCAAATTGCTTCTTGAGATGCCATTGACAAGGCCATGT
ACTCTGCTTCGGCAGTTGATAACGCTACACATGTTTGTTTCTTACTCATC
CAGCTGACTGCAGCTCCACTGATTTTGTAAACGTAGCCAGAAGTTGACTT
TCTATCGTTGAGATCTCCAGCCCAATCAGCATCCGAGTATCCAACAAGTT
GCGTTTCACCGTAATAGCGTAATCCACAATAGATAGTCCCGTTAAGGTAT
CTCATGATTCTTTTGACGGCGGTCCAATGATCAATCGTTGGCTTTGCTGT
AAACTTTGCGACGTTGCTAACGGCAAATGCGATATCTGGTCGAGTCTTTG
TCGATAGATAGAGCAAACATCCAACTGCAGATTGATACATTTCTTGGTCA
AATAACTTGTCATTGTCTGTTGCTTTCATTAGCTTTGTCCCTGTTTCGAC
TGGAGTTGCaacagattttgaattttccatGTTGAACTTGTGAAGGACTG
CTTTAATGTACGATGGTTGACCAATCCAAATACTTCCATCGTCTAAGTAG
ACTATTTTAACTCcaagaaaatatttcagttCTCCCATGTCCTTTACGTC
AAATCGTTGAGCAATTTCGTTGATGATTTGTTGAATCCTTTCGGTCGATT
TTCCTCCGAGTATGATATCATCGACGTAAACGGCTAGAATGAACACTTCT
CCTCCTGTATTGAGTGTGTAAATACATGGATCGTTCATTGAAGGTACGAA
TCCCATTTTCTTGAGTTGCTCATCTAAGGCTTGATTCCAACAACGTGGTG
ATTGCTTGAGACCATAAATGCTTTTCTTCAATTTGCAAACCATGTGTTTT
TGTCCTTCGACTTCGAACCCTTCGGGTTGTTTCATGTAAATGTCTTCTTC
TAGAGTTCCGTTAAGAAATGCGGTTGTTACGTCAATTTGGTGCAAACGAA
GTTTGTATTTTGCAGCTAGTGCAATTATTGTTCTAATCGATTCGAATCTC
ACGACAGGACTGAATGTCTCGTCATAATCGATACCGTTTTTCTGCGTAAA
TCCTTGAGCCACTAATCTCGCTTTGTAGCGCTCTACGTTTCCGTCTGCAT
CTCGTTTGCGT Coding sequence (CDS) from alignment at scaffold_512:108909..110619 >TCONS_00070056 ID=TCONS_00070056|Name=TCONS_00070056|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_512:108909..110619 (Clytia hemisphaerica)
TCACTCGCTGTCTGTCAGATCGTGAATTCCGATCATGTCTTTCAGTTTGT
TGAATTGAACACGGGTCAGTCCCTTTGTTAACATGTCAGCTACCATGTAC
TCACTCGGACAATACTTCAATTCGATGTTCTTTTCGTGAACCTGGTTACG
GACGTAATGATGTTTAATATCGATATGTTTCGCACGTCCGTGaaatttcg
gattttctgcCATACAGATCGTTGATTGGTTGTCTTCATAGATAGTAATC
GGTCCATCTACTTTCTCGTTAAGGTCGTGAAGAAGTCGCCTCAGCCAAAT
TGCTTCTTGAGATGCCATTGACAAGGCCATGTACTCTGCTTCGGCAGTTG
ATAACGCTACACATGTTTGTTTCTTACTCATCCAGCTGACTGCAGCTCCA
CTGATTTTGTAAACGTAGCCAGAAGTTGACTTTCTATCGTTGAGATCTCC
AGCCCAATCAGCATCCGAGTATCCAACAAGTTGCGTTTCACCGTAATAGC
GTAATCCACAATAGATAGTCCCGTTAAGGTATCTCATGATTCTTTTGACG
GCGGTCCAATGATCAATCGTTGGCTTTGCTGTAAACTTTGCGACGTTGCT
AACGGCAAATGCGATATCTGGTCGAGTCTTTGTCGATAGATAGAGCAAAC
ATCCAACTGCAGATTGATACATTTCTTGGTCAAATAACTTGTCATTGTCT
GTTGCTTTCATTAGCTTTGTCCCTGTTTCGACTGGAGTTGCaacagattt
tgaattttccatGTTGAACTTGTGAAGGACTGCTTTAATGTACGATGGTT
GACCAATCCAAATACTTCCATCGTCTAAGTAGACTATTTTAACTCcaaga
aaatatttcagttCTCCCATGTCCTTTACGTCAAATCGTTGAGCAATTTC
GTTGATGATTTGTTGAATCCTTTCGGTCGATTTTCCTCCGAGTATGATAT
CATCGACGTAAACGGCTAGAATGAACACTTCTCCTCCTGTATTGAGTGTG
TAAATACATGGATCGTTCATTGAAGGTACGAATCCCATTTTCTTGAGTTG
CTCATCTAAGGCTTGATTCCAACAACGTGGTGATTGCTTGAGACCATAAA
TGCTTTTCTTCAATTTGCAAACCATGTGTTTTTGTCCTTCGACTTCGAAC
CCTTCGGGTTGTTTCATGTAAATGTCTTCTTCTAGAGTTCCGTTAAGAAA
TGCGGTTGTTACGTCAATTTGGTGCAAACGAAGTTTGTATTTTGCAGCTA
GTGCAATTATTGTTCTAATCGATTCGAATCTCACGACAGGACTGAATGTC
TCGTCATAATCGATACCGTTTTTCTGCGTAAATCCTTGAGCCACTAATCT
CGCTTTGTAGCGCTCTACGTTTCCGTCTGCATCTCGTTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070056-exon-scaffold_512-1491911889:108909..110619 | TCONS_00070056-exon-scaffold_512-1491911889:108909..110619 | Clytia hemisphaerica | exon |
| TCONS_00070056-exon-scaffold_512-1510915933:108909..110619 | TCONS_00070056-exon-scaffold_512-1510915933:108909..110619 | Clytia hemisphaerica | exon |
| TCONS_00070056-exon-scaffold_512-1575043694:108909..110619 | TCONS_00070056-exon-scaffold_512-1575043694:108909..110619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:108909..110619 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
|
