TCONS_00070050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070050
Unique NameTCONS_00070050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070050 ID=TCONS_00070050|Name=TCONS_00070050|organism=Clytia hemisphaerica|type=transcript|length=305bp
AGGTGTCTTTAATCTATATCGTATATATTGatatcatccaatcagatttc
aGCTTTATAATGTTCACCACTACTCAAATGTACATCACTGATGCAAAGCA
AATGTTGGCCGACCTTCCAACACGTCGTGGTTGCAAGCTTTTCGACATCA
ACAACAGTTCGAGATGGATCAACGGTGATTCCTGGATGACAACTGATGTC
AAGGACTTCCCCATCAAAAAAGTGAGAGTGACAAAACAGAAAATGTGACT
ATGGGCGAAAAGAGTCTCAAGGGACGATGACGTAATGAAAAATGtattaa
aatgt
Run BLAST on NCBI

transcript from alignment at scaffold_512:27680..27984

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070050 ID=TCONS_00070050|Name=TCONS_00070050|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at scaffold_512:27680..27984 (Clytia hemisphaerica)
acattttaataCATTTTTCATTACGTCATCGTCCCTTGAGACTCTTTTCG
CCCATAGTCACATTTTCTGTTTTGTCACTCTCACTTTTTTGATGGGGAAG
TCCTTGACATCAGTTGTCATCCAGGAATCACCGTTGATCCATCTCGAACT
GTTGTTGATGTCGAAAAGCTTGCAACCACGACGTGTTGGAAGGTCGGCCA
ACATTTGCTTTGCATCAGTGATGTACATTTGAGTAGTGGTGAACATTATA
AAGCtgaaatctgattggatgatatCAATATATACGATATAGATTAAAGA
CACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043611XLOC_043611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070050-exon-scaffold_512-1491911889:27680..27984TCONS_00070050-exon-scaffold_512-1491911889:27680..27984Clytia hemisphaericaexon
TCONS_00070050-exon-scaffold_512-1510915933:27680..27984TCONS_00070050-exon-scaffold_512-1510915933:27680..27984Clytia hemisphaericaexon
TCONS_00070050-exon-scaffold_512-1575043694:27680..27984TCONS_00070050-exon-scaffold_512-1575043694:27680..27984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_512supercontigscaffold_512:27680..27984 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55079	1.58081	1.3557	0	2.98788	4.72213	0.474754	4.44459	2.17823	0.770884	1.8706	1.47559	0.736769	2.04038	0	0.225022	1.38605	0.568261	2.35525	1.29121	0	0.522441	0	0	1.18941	4.6542	0	0	0	0.417583
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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