TCONS_00070049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070049
Unique NameTCONS_00070049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070049 ID=TCONS_00070049|Name=TCONS_00070049|organism=Clytia hemisphaerica|type=transcript|length=531bp
GcgttttcaatattttagaatatttattcaaaaatttggatAAGACACCC
CTTTTTTTTTGATTCGGAATCGGTAGAGGAAGGACATGCTCTGCTGACGT
GTCAAAACTTTGAAGGCGTGTTGatagttttttgctagttttttgCTGTA
CATTGGATGAAATCTTTTTGATACATTTATTCTGCTGTTTTACTGGTTTT
GTTTTCGATTTATTGGAACTATGAGTCAAGCAAACAAAATCACAAGAAGT
TCTTCTGATGTTGAAAAATATGGAGATTTATTAGATACAAAACTTGATGC
AAAGCTTCTTAAATTGTCGAAATCTTTAGCTTCCAAAGAAGACGTGAGTG
AGATCAAAGAAATGTTTATTGAGATGGCTAAACGTATCGATGACCAAGAC
AGGAAGATTGCTTCTCTTGAGATTGAGGGTCAGGATCATGAAGAAAGAAT
CCTTAAGCTGGAAAACAAAGTTTTTGTATTGGAGGACTCAGTTAACAAAT
TGCTAGATAAGAATGCTGTTTTGTCTAGTTC
Run BLAST on NCBI

protein sequence of TCONS_00070049-protein

>TCONS_00070049-protein ID=TCONS_00070049-protein|Name=TCONS_00070049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MSQANKITRSSSDVEKYGDLLDTKLDAKLLKLSKSLASKEDVSEIKEMFI
EMAKRIDDQDRKIASLEIEGQDHEERILKLENKVFVLEDSVNKLLDKNAV
LSS
Run BLAST on NCBI

transcript from alignment at scaffold_512:16166..16696

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070049 ID=TCONS_00070049|Name=TCONS_00070049|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at scaffold_512:16166..16696 (Clytia hemisphaerica)
GAACTAGACAAAACAGCATTCTTATCTAGCAATTTGTTAACTGAGTCCTC
CAATACAAAAACTTTGTTTTCCAGCTTAAGGATTCTTTCTTCATGATCCT
GACCCTCAATCTCAAGAGAAGCAATCTTCCTGTCTTGGTCATCGATACGT
TTAGCCATCTCAATAAACATTTCTTTGATCTCACTCACGTCTTCTTTGGA
AGCTAAAGATTTCGACAATTTAAGAAGCTTTGCATCAAGTTTTGTATCTA
ATAAATCTCCATATTTTTCAACATCAGAAGAACTTCTTGTGATTTTGTTT
GCTTGACTCATAGTTCCAATAAATCGAAAACAAAACCAGTAAAACAGCAG
AATAAATGTATCAAAAAGATTTCATCCAATGTACAGcaaaaaactagcaa
aaaactatCAACACGCCTTCAAAGTTTTGACACGTCAGCAGAGCATGTCC
TTCCTCTACCGATTCCGAATCAAAAAAAAAGGGGTGTCTTatccaaattt
ttgaataaatattctaaaatattgaaaacgC

Coding sequence (CDS) from alignment at scaffold_512:16166..16696

>TCONS_00070049 ID=TCONS_00070049|Name=TCONS_00070049|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_512:16166..16696 (Clytia hemisphaerica)
ACTAGACAAAACAGCATTCTTATCTAGCAATTTGTTAACTGAGTCCTCCA
ATACAAAAACTTTGTTTTCCAGCTTAAGGATTCTTTCTTCATGATCCTGA
CCCTCAATCTCAAGAGAAGCAATCTTCCTGTCTTGGTCATCGATACGTTT
AGCCATCTCAATAAACATTTCTTTGATCTCACTCACGTCTTCTTTGGAAG
CTAAAGATTTCGACAATTTAAGAAGCTTTGCATCAAGTTTTGTATCTAAT
AAATCTCCATATTTTTCAACATCAGAAGAACTTCTTGTGATTTTGTTTGC
TTGACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043610XLOC_043610Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070049-proteinTCONS_00070049-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070049-exon-scaffold_512-1491911889:16166..16696TCONS_00070049-exon-scaffold_512-1491911889:16166..16696Clytia hemisphaericaexon
TCONS_00070049-exon-scaffold_512-1510915933:16166..16696TCONS_00070049-exon-scaffold_512-1510915933:16166..16696Clytia hemisphaericaexon
TCONS_00070049-exon-scaffold_512-1575043694:16166..16696TCONS_00070049-exon-scaffold_512-1575043694:16166..16696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_512supercontigscaffold_512:16166..16696 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143055	0	0.0567417	0	0.477238	0.549556	0.960785	1.42604	0	0.144719	0.223253	0.882703	0.698044	1.19616	0	0	0	0	0.676798	2.52872	0.229808	0	0	0.204055	0	0.639185	0	0.197019	0	0.267315
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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