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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070035 ID=TCONS_00070035|Name=TCONS_00070035|organism=Clytia hemisphaerica|type=transcript|length=365bp
tatctaggtataaaaatgattcaaaaaattgagtaaagaaaaacaaaaca
aaaattgaaataatggATGATAAACCTTGCTTGTTGTTCTGCGATACCTT
CGTTCATGAAAGTCACGATGAAATTCAACTGGATTTGATTGGATTTGCTC
GACCTGTGGCAATCTCAGAGATTAGAGTCATTCCAAAAGGTTGTAAAGTT
CACCCAGAAATCAATGATCGGTTAGGtgaAACCAAACCATCGTCTTTCAA
ATTGGAATTATTCATCAAGAATTTATCTCAACCAAGAGCAGCAGTATTTG
AAAAGTTGGGGATACTTGATTATGAAGAAGGGAAAAGCATACAGCtcatt
tcaaattcaaaggtG Run BLAST on NCBI protein sequence of TCONS_00070035-protein >TCONS_00070035-protein ID=TCONS_00070035-protein|Name=TCONS_00070035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MDDKPCLLFCDTFVHESHDEIQLDLIGFARPVAISEIRVIPKGCKVHPEI
NDRLGETKPSSFKLELFIKNLSQPRAAVFEKLGILDYEEGKSIQLISNSK
V Run BLAST on NCBI transcript from alignment at scaffold_512:157677..161947- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070035 ID=TCONS_00070035|Name=TCONS_00070035|organism=Clytia hemisphaerica|type=transcript|length=4271bp|location=Sequence derived from alignment at scaffold_512:157677..161947- (Clytia hemisphaerica)
TATCTAGGTATAAAAATGATTCAAAAAATTGAGTAAAGAAAAACAAAACA
AAAATTGAAATAATGGATGATAAACCTTGCTTGTTGTTCTGCGATACCTT
CGTTCATGAAAGTCACGATGTATGTATTCTTTTATTTAGAACTTTTTGCT
CATCCATACACATTCATTTGTGTTTTTCTAATGGTTGTGATTCATGATAT
ATGCACCGTTGCAATGTTTTCATAAATCATGTGAATCTTTTTGGACCTAC
CCCGGTGGGGTAGAGGTCCTATAAATTAACCGATGTCCGTCCGTCCGTTC
GTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAATTTTTTATGA
TTTTTGGCACAATGATGCAAAATGGCAATACCCAAAATGTGACGGAGCCC
GATTTTCGAAAAAAAAAATATTTAGGCAAATTTGGGCCAAAAACTGCCTA
AAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTAGGTTTTTCT
GATTTTTTGTACAAAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAA
ACGCTATATTTTCTGACTGATTTTTTTTCATTTTTCTCCTCGCATTGCTA
TCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTCTGTTT
TTATTTCTACCCAAATGTCATTGCAACCAATCAGCTGTTGTAAAAGTGGC
GTAATGTCAAAATTAATTGCAGGGGAACATGATGCATGATCAAAGATCAG
CTGTTTTTCTACATGCAGCAAATAAAAGGTTTTACTGGGTCAAAACAAAA
GACAAAAAGTTCTTTTAGAGAAGTTTAAAGTTATTCATTAGAATACTTCT
TCTTCTTCTGGCCAAAAAATTAAGAATATAGTTAAGAATATCATCAACAA
GGAATTCAGCAACCTAAAAATGCCGTTTTTATAGTATTTTTAACTTACCA
ATTATCCCCAATTGAACTTTCACATAAATGCCATTTTATACTTCAGGTGT
GTGTATTACCTGTTCAATTTATGTTGAATTTGGATCCTAACATAAGAATA
CCTTAAGAACATTTAAGAATGATTTTCCCCCAAAAAATACAATTCTTATA
AAAAAAGCGTGTAANAGTTAAAATATCCAGTGTGAAATGGAAAAAATAAA
ATTCTTATAAAAAAAGCGTGTATGTAATTTTGACTCTTCGTTTCAGGAAA
TTCAACTGGATTTGATTGGATTTGCTCGACCTGTGGCAATCTCAGAGATT
AGAGTCATTCCAAAAGGTTGTAAAGTTCACCCAGAAATCAATGATCGGTT
AGGGTGAGTATATAATATAATTAGTTCATAGTATCTAACAGCATTAATAC
TGGATACCTAACCCTGTAAACCAGATCCTTTTTCCTTATCGACCGCCGAA
GGCGGTTAATTTTCCGAGCTGTATACGGGTAAAAAAGTTGGATTCAAAAT
TTGTCACAACTGTGCTATCCTTTTGAATATTTTAAAATTTGACTCGCCCA
TTCTGCACATTTTGCAGAATTTTGTCGGTTAAAGGTTTGAGCAGCTGAGA
CAAATTTGAGATATTTGTAGAATCGCTGGTTTTCTGAAATGAGTGGCGTT
TTACTACGGAGATAAAAAAAGCATTTTTTCGGAGATAACGATGTTAATCA
TAAATAGATGAAAAACATGATGTGGCGCCCCGCTAGGGAGATAAATGTTA
AGTAAATAAAAAAACTTTAAGTATTTATCAGCTTCTGATTCAAACCATAA
GTGATTAAACAACTCAAAATATACTCACCAAGCAACTTAGCATAACTGTC
ATAATGTGTTAGCGTATTGTTTACATAAGCATACAAAAATCCGAAAACAA
GCTCCGAGATGCTTAGGTTCAAAGCTTAATAAGGCTGAAAAATGCTTCAG
GGGATGCTTAAATCTTAAACATAAATTTAGGGAAATACTGAAAATCCGTA
AAATTCCAGCCAAAATCAGGAAAAAAACATTTCTCGTAGGCATATGTTCA
AGTTAAATCACGCAAACGAGAGTGTCGAAGTGGATCATTGTCTAAACCGA
TGAATTCTTCATCAAATCTAAGGCGGTCGTTATCCAGTGATGTGAGCACT
GTTCTAGTGATTATTTTATAAGGGTTGATAAGTGTATTGCTATCATATCT
TTTTATTTAATACTCTCAAAGAAATCATTTGCAAAAGATATTGATCACAA
TAAAACAAAAAAAGTAAACATGACTGTACTCTTAGAGAGAAAGTAAAAGA
AGTCTGAAAGACATATGTAACAAACTCAAAAATGAATATGTGATGCAGTT
GAGTCTATTCAAATATTTCTGTAATTCGAATCTAAATCATCGATCTCTTC
AGCAGCAAAATGGTTTAAAATACTATACTCCCTGTAATTCGAATCTTTCT
CTAAATCGAAGAAGATTCTTTACCCCTTGAATATCATATAAGAGGTAGAC
TGCATCACTGTAACAAATAACTTTGTTGGTTTTTTGTTTAGTTAACAAGT
TTTAGCTGGTTTTTATTTCACTTTTATTTTGAGTATTACTTTTTTAATTT
TAGTGAAACCAAACCATCGTCTTTCAAATTGGAATTATTCATCAAGAATT
TATCTCAACCAAGAGCAGCAGTATTTGAAAAGTTGGGGATGTAAGATTTT
TATGATTGGTTTACCTTTGTTTCATTTTTAAGTTCTAATCATCAAATTGG
AGGGCAGCATACTGGTTGGTTGGTATTGGTACATTCTGTGCTACTGGTTG
ATATTAAATACACCCCCTTCTCATAGACCTGGTTGAACCCCTTCCCACCT
GAAAAATAGCTGAAAATAATCAAATCAACAAAATCCTCACTGCAAAATGT
TGTGCTATTTTTTTCATCTTCACTGAATTTTCTGACTTGAAAACAATGGA
ATTCAAATTCCTAGCCATAAAGAATACGGGAAAATCGATCTCCGTCGACT
TTCAGACCATTATTTTTACCCCCATTGGCTGAAAAAATCCTACCAGGGCT
GTGAGAATGGGGTGCTTAAATTAATGAACTAATTAAAATCTTTTTTCGAA
AATCAGAAGCTCGAATACTGCAGTAAGAAACTCTGTGTTTAAACTTTCCT
TTCTGTAGACAAAAATCCGACCATTTGAGATAAGAACATGATTTCCATCT
CCCCAGTTAGATTGATTTTTGACAGAAGATTATTTTTTCAGTCCAGACTT
AAAAAACCTGGTTGCAGCACTTACAACTAAATAGTATAATAACAACCTCT
ATTTAAACTGTTCTTTCAGACTTGATTATGAAGAAGGGAAAAGCATACAG
CTCATTTCAAATTCAAAGGTG Coding sequence (CDS) from alignment at scaffold_512:157677..161947- >TCONS_00070035 ID=TCONS_00070035|Name=TCONS_00070035|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_512:157677..161947- (Clytia hemisphaerica)
ACTTGATTATGAAGAAGGGAAAAGCATACAGCTCATTTCAAATTCAAAGG
TGTGAAACCAAACCATCGTCTTTCAAATTGGAATTATTCATCAAGAATTT
ATCTCAACCAAGAGCAGCAGTATTTGAAAAGTTGGGGATGAAATTCAACT
GGATTTGATTGGATTTGCTCGACCTGTGGCAATCTCAGAGATTAGAGTCA
TTCCAAAAGGTTGTAAAGTTCACCCAGAAATCAATGATCGGTTAGGATGG
ATGATAAACCTTGCTTGTTGTTCTGCGATACCTTCGTTCATGAAAGTCAC
GATACTTGATTATGAAGAAGGGAAAAGCATACAGCTCATTTCAAATTCAA
AGGTGTGAAACCAAACCATCGTCTTTCAAATTGGAATTATTCATCAAGAA
TTTATCTCAACCAAGAGCAGCAGTATTTGAAAAGTTGGGGATGAAATTCA
ACTGGATTTGATTGGATTTGCTCGACCTGTGGCAATCTCAGAGATTAGAG
TCATTCCAAAAGGTTGTAAAGTTCACCCAGAAATCAATGATCGGTTAGGA
TGGATGATAAACCTTGCTTGTTGTTCTGCGATACCTTCGTTCATGAAAGT
CACGATACTTGATTATGAAGAAGGGAAAAGCATACAGCTCATTTCAAATT
CAAAGGTGTGAAACCAAACCATCGTCTTTCAAATTGGAATTATTCATCAA
GAATTTATCTCAACCAAGAGCAGCAGTATTTGAAAAGTTGGGGATGAAAT
TCAACTGGATTTGATTGGATTTGCTCGACCTGTGGCAATCTCAGAGATTA
GAGTCATTCCAAAAGGTTGTAAAGTTCACCCAGAAATCAATGATCGGTTA
GGATGGATGATAAACCTTGCTTGTTGTTCTGCGATACCTTCGTTCATGAA
AGTCACGATACTTGATTATGAAGAAGGGAAAAGCATACAGCTCATTTCAA
ATTCAAAGGTGTGAAACCAAACCATCGTCTTTCAAATTGGAATTATTCAT
CAAGAATTTATCTCAACCAAGAGCAGCAGTATTTGAAAAGTTGGGGATGA
AATTCAACTGGATTTGATTGGATTTGCTCGACCTGTGGCAATCTCAGAGA
TTAGAGTCATTCCAAAAGGTTGTAAAGTTCACCCAGAAATCAATGATCGG
TTAGGATGGATGATAAACCTTGCTTGTTGTTCTGCGATACCTTCGTTCAT
GAAAGTCACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070035-exon-scaffold_512-1575043694:161829..161947 | TCONS_00070035-exon-scaffold_512-1575043694:161829..161947 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1575043694:159695..159801 | TCONS_00070035-exon-scaffold_512-1575043694:159695..159801 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1575043694:158358..158444 | TCONS_00070035-exon-scaffold_512-1575043694:158358..158444 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1575043694:157677..157728 | TCONS_00070035-exon-scaffold_512-1575043694:157677..157728 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1510915933:161829..161947 | TCONS_00070035-exon-scaffold_512-1510915933:161829..161947 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1510915933:159695..159801 | TCONS_00070035-exon-scaffold_512-1510915933:159695..159801 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1510915933:158358..158444 | TCONS_00070035-exon-scaffold_512-1510915933:158358..158444 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1510915933:157677..157728 | TCONS_00070035-exon-scaffold_512-1510915933:157677..157728 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1491911889:161829..161947 | TCONS_00070035-exon-scaffold_512-1491911889:161829..161947 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1491911889:159695..159801 | TCONS_00070035-exon-scaffold_512-1491911889:159695..159801 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1491911889:158358..158444 | TCONS_00070035-exon-scaffold_512-1491911889:158358..158444 | Clytia hemisphaerica | exon |
| TCONS_00070035-exon-scaffold_512-1491911889:157677..157728 | TCONS_00070035-exon-scaffold_512-1491911889:157677..157728 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:157677..161947 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR031801 | VIR_N |
Blast
BLAST of TCONS_00070035 vs. Swiss-Prot (Human)
Match: VIR (Protein virilizer homolog OS=Homo sapiens GN=KIAA1429 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 5.906e-19 Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 3
Query: 81 LLFCDTFVHESHDEI-QLDLIGFARPVAISEIRVIPKGCKVHPEI--NDRLGETKPSSFKLELFIKNLSQPRAAVFEKLGILDYEEGKSIQLISNSKV 365
LLF DTF H S ++ +D++ F V I+E+RVIP G + H + N GET P +F+L+LF N+S+P A VF++LG L+Y+E SI NSKV
Sbjct: 9 LLFLDTFKHPSAEQSSHIDVVRFPCVVYINEVRVIPPGVRAHSSLPDNRAYGETSPHTFQLDLFFNNVSKPSAPVFDRLGSLEYDENTSIIFRPNSKV 106
The following BLAST results are available for this feature:
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