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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070031 ID=TCONS_00070031|Name=TCONS_00070031|organism=Clytia hemisphaerica|type=transcript|length=1095bpRun BLAST on NCBI protein sequence of TCONS_00070031-protein >TCONS_00070031-protein ID=TCONS_00070031-protein|Name=TCONS_00070031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp KFSPNSATPSEKRANSAPPSTMKPPLQRALDHKNRLLQYDRNFTKRTKVIRun BLAST on NCBI transcript from alignment at scaffold_512:78457..126545- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070031 ID=TCONS_00070031|Name=TCONS_00070031|organism=Clytia hemisphaerica|type=transcript|length=48089bp|location=Sequence derived from alignment at scaffold_512:78457..126545- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_512:78457..126545- >TCONS_00070031 ID=TCONS_00070031|Name=TCONS_00070031|organism=Clytia hemisphaerica|type=CDS|length=7176bp|location=Sequence derived from alignment at scaffold_512:78457..126545- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070031 vs. Swiss-Prot (Human)
Match: TRIP4 (Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4) HSP 1 Score: 229.18 bits (583), Expect = 1.053e-68 Identity = 126/288 (43.75%), Postives = 186/288 (64.58%), Query Frame = 3
Query: 66 MKPPLQRALDHKNRLLQYDRNFTKRTKVIDDESDYFASD-NRWLSNKQRNLLTKKEQDLRDKRFASRLDKKFTIDFAGRKIVESEENN----HMYIEEDISTPIDSLKRNEQLTNIESDDRNPL---IDPRIGVQPPTFHPAERDETSEETRPKNVWKGSSTN------NHKKRLQDNQLQEISDQGMCMSMHQPWASLLVHGIKKLEGRSWYTPHRGRLWIASTAQRTDQEDIKHVVDDYKRMYS-DIPSHRYPKDYPSSALLGCVNVVDCASNEEYFQKHPMCTEE 884
+K L++A+ HK++LL++DR +RT+VIDDESDYFASD N+WLS +R L K+E++LR+ R ASRL KK TIDFAGRKI+E EEN+ H ++E I I + N+ LT ++ PL ++P + PP + D T ++ K ++ S H+ R+QD + QE D G C+S+HQPWASLLV GIK++EGRSWYTPHRGRLWIA+TA++ +++ + Y+ + D+ +P DYPS LLGCV+++DC S +++ ++ P ++E
Sbjct: 255 IKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRKILE-EENSLAEYHSRLDETIQA-IANGTLNQPLTKLDRSSEEPLGVLVNPNMYQSPPQW----VDHTGAASQ-KKAFRSSGFGLEFNSFQHQLRIQDQEFQEGFDGGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRGKDV---EFPNDYPSGCLLGCVDLIDCLSQKQFKEQFPDISQE 532 The following BLAST results are available for this feature:
BLAST of TCONS_00070031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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