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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070023 ID=TCONS_00070023|Name=TCONS_00070023|organism=Clytia hemisphaerica|type=transcript|length=2533bp
AAGTgtgcaaagtttttttgttaattgtattttttttttcatgcttgagt
catttaacattgttattattcaacatgacattaaAATTAGGGAAAGGTCT
ATTTCTATTTGTTATGAAAGTCCTTTTGCTCACCTTATTCTTTTAGGACG
TAAGATACCTGAAGATACTCCTTGTAAGACATATTTTAATTGAGTTGCTG
TATCATCATGTACCTCCAAAGTTTATTAACGATCATCATATCATGCACTC
TTATCAGTGCTCAAACTGATAATACAGAAGttgAAGTGACAGCAACTATT
CCTATATTGGTGATTCAGTCATCCGAATTACAAGAAGACAAAAATGCATC
ATCAATCCCTATATCTGCTACAATCCAACCAACCACCCATGTTGTTCTGC
CTGATTATACGACAATAACAGCAGTCACATCTGTAGCTGGAAATAGCAGT
TCTGCAACTATGCAGATCTCTTCAAGCAGTCATTCAGTCTTCATCTCAAC
TGAGATAATCTCATCTGAATCCATTTATTCTACATCACATCCAGCATCAG
AATCACTTTTTGTATCTTCATCAAGCCAATCGGATTCAATTCAAGTTTCC
ACATCTATTGACCCTTGGATTGCATCTTCCTCAAATGTGGTTCTCTCATC
CTCTGCAACAGTTTATCCTACCACCTCTGCAGttccAGACGTTGTTTATG
AGTGTGGTGATGAATGCAAATcgttgaaaaagaaattatacGCAGCTGCA
GCGTTCGCTATTTTGTTTCTGGTTGTTATTTTGGTTCTTGGTGGGTTGTT
GTACAGACAACATCAAATCAGTCGTGACTATAGAGATGATCCTTCCTTGT
CAAGATTGATTTAATTTCTGTTCAAAAATTGTGGTGTTGTtgatttctaa
ctttttttaagACCCCTCTATAGTTTATTGTATGTCCAATAAAAAGTTGG
CATAATGTATGTATATAGTATTTAGAGCCTGGAAGCTATGGTTTTTAGAA
TGGTGAAACACTGGAAAATCTATGCAACCAATTGTATGACAAAAATTGAA
TGGACAAATACTGATCGTTCTGCACAATAAAGAATTTCTGTTCGTATGAA
TTCTATCCTTATTTTTCTTGACACTGTTAATTCCTAAAActgaaaatggt
aaaatttaaaataatttttgtattttgtatgcgaccaaatatttttctta
tctCCATGTTAAAAAGATAAACTAAATCAAtgtttttgagagaaaaaatg
gCTATTATACTCCAAGTTACAATAAAGGTCGACAAGAATCCAAAGTTCTA
AgaaatttggtttgttttttgggCACAAAAATACTGACTTTGGAGATTAT
AACTTGATGATTCTGAGCTATCTAAATAACTTTGATCAGTCTTGAAAAAG
GTGGGTGGGGCTTTGGAAAAATTTCTTATGGGAATATTAAGTTTCAGTTC
TGTATTATTAATATTTAATAaagtaaacttttttgactcacattgtaaag
aattttttaaactatttttgtCAGcagaattttcttttctttttttttta
agttcagTTGATATATTATGGACGCCTGGTGTCTCATTTAGCCTACATGG
TGGGATAGCCCATGGCGAAATGTCTGATATTTTACACAATAGAtttcttt
ttcataaaattattttagagcttgtttttgtaaattttgttacagtttAT
GTTAAGGGATAACAGTGCTTTTGGAATATCATAAACGttcaatgtttcaa
aaaaagctgTGTTATTCTAAAACACTACATAGTTTTGATTGGTTCCTTTG
GTGATCTGAACTGTCCTAGTGCTTTTACACGTGTTTGTAAATTAGTTAGt
aatatgacgtcatttaacgttagataaacgttgaaacaaagaTGCGTACT
GCATTTGTTGCTAAAGTCAATTCACtttaatagatcttatcggagttttt
gatttttctaaaaagcgaTGCactgtgggattgtttcgggggtattacaa
tggaaatctcttaggaatatCTTAGGAAacatcccacaatgcatcgctgt
tttagaaaattcaaaaactccgataaggtctattgtgtaatgtttcaaaa
aaagctgTGTTATTCTTAAACATTACATGATTTTGATTGGGTCCTTTGCA
GATCTGCACTGTCCTACTGAGTTTACACGTGTTTGCCTTGTGTAATCAAT
TGTTTAGTAATCTGGAACATCTGATTAACAAAAAGAAatgaacatgttaa
gaaaattatcaagtttaaaactcaaaaagttaaaaacatctgaaggcttt
aaaaactttgtatgttcttataaaaaacgtgcagcTACATTATCATGCTA
ATCGCAATTTTATGTATtatatatcaaaacatttgtaattaaaattttcc
agtaTATAATATCTTTACAATGCAttcttgaagaaaaaaacacgttttat
aaaaaccaaaacACAATGTCGTCATTTCCTTCATTtgcattttatatttt
cacCCAAGTCTCCACAGAAAAGTCAATCTCTCG Run BLAST on NCBI protein sequence of TCONS_00070023-protein >TCONS_00070023-protein ID=TCONS_00070023-protein|Name=TCONS_00070023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MYLQSLLTIIISCTLISAQTDNTEVEVTATIPILVIQSSELQEDKNASSI
PISATIQPTTHVVLPDYTTITAVTSVAGNSSSATMQISSSSHSVFISTEI
ISSESIYSTSHPASESLFVSSSSQSDSIQVSTSIDPWIASSSNVVLSSSA
TVYPTTSAVPDVVYECGDECKSLKKKLYAAAAFAILFLVVILVLGGLLYR
QHQISRDYRDDPSLSRLI Run BLAST on NCBI transcript from alignment at scaffold_512:172674..177490+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070023 ID=TCONS_00070023|Name=TCONS_00070023|organism=Clytia hemisphaerica|type=transcript|length=4817bp|location=Sequence derived from alignment at scaffold_512:172674..177490+ (Clytia hemisphaerica)
AAGTgtgcaaagtttttttgttaattgtattttttttttcatgcttgagt
catttaacattgttattattcaacatgacattaaAATTAGGGAAAGGTCT
ATTTCTATTTGTTATGAAAGTCCTTTTGCTCACCTTATTCTTTTAGGACG
TAAGATACCTGAAGATACTCCTTGTAAGACATATTTTAATTGAGTTGCTG
TATCATCATGTACCTCCAAAGTTTATTAACGATCATCATATCATGCACTC
TTATCAGTGCTCAAACTGATAATACAGAAGGtaaagaaaaaatcttgttA
TATACTCTATGAGATCTCAAAcgttttggaaatattttcagctatcactc
gatgatttttttttctattgctatttggttgagttgcaggaggctttgag
gcgcATCAACCAATGTCAATGACCACTACACCACAGCTCTGAATAGCCTG
GTTTTAGCTTATTATCTTATTTTGGGGGCTTTTTTTAGGTAAAATTTTGT
ACCACGCCCCTTTATTTGGGACATTACATGTTACGAgtacatgctttttt
ataaaaacctgTATATACCAGGCTTGGTTCTTCTTATTCTTCATGCatga
tttttatgtttatataaattttaaaatgctcttaaaaataACTAAAGtgt
gtctcaaaataatttgcagctgagacaaaaatggctgtaacttttgataa
aatttgaatgaagttgcgattttgtgctcgttgaaaagatatttgtgaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgaaaa
attttttcaaaaatattcattcaatcaaaagatatcaaacaaagtttgtt
attggttgattgacaaaaggctgtttatttgtcgttttttactactttat
agagtcaaccagcaatagtttttgtttgatatcttttgattgaataaata
attttgaaaaatctttctccTTAGTAAAAGTACTTTAATACAGAAATTAt
acgtaaaattttgaaattttgaaactttttcccacagttgAAGTGACAGC
AACTATTCCTATATTGGTGATTCAGTCATCCGAATTACAAGAAGACAAAA
ATGCATCATCAATCCCTATATCTGCTACAATCCAACCAACCACCCATGTT
GTTCTGCCTGATTATACGACAATAACAGCAGTCACATCTGTAGCTGGAAA
TAGCAGTTCTGCAACTATGCAGATCTCTTCAAGCAGTCATTCAGTCTTCA
TCTCAACTGAGATAATCTCATCTGAATCCATTTATTCTACATCACATCCA
GCATCAGAATCACTTTTTGTATCTTCATCAAGCCAATCGGATTCAATTCA
AGTTTCCACATCTATTGACCCTTGGATTGCATCTTCCTCAAATGTGGTTC
TCTCATCCTCTGCAACAGTTTATCCTACCACCTCTGCAGGTATGacattt
taaaaagtttcaaatagTCATAAGAATTAAATAAAACGTTAAAACATACT
CTCTAACGATATTTAGACCTTATTTACATATCTTTATTAAGTTGATAAAG
ATCTGTTAAGGTCGAAATATCATTGGTAAGAAATTAACAACTTTCTTAGT
TTCAATAGTTGGCTTTTTATGTTTGATTCATACAGTCATGAGTATTCAAT
TACCGAAATGTATATCATCTTTTTGCTTGGGACCCCCTTTTTTCGTTATT
CTTGTTTTGCTTTTATTACTAGCCCATTGTTATTGTCATTTAGggaattt
ttaaacattttgccTTTTTAAGTCAGGTCTAGATAAtggaaattatcttt
tcaataactAATTTGGACTCATTCGGCAAGTTTTGCAGAAAGACCTGATA
TGTCCTACCGTTTGCCAAGATTCTTTCAACAAGACTTAATTCAGGATTTT
TACTGCTCGCAAAATTGTTTAATCAAAAATTGTTGTCACTAAAATTACTG
TATTTGAAATATCTGTGGTGCATAACTATCAcaatttgaaactttctttt
tttcagttccAGACGTTGTTTATGAGTGTGGTGATGAATGCAAATCGNCT
AAAATTACTATATTTGAAATATCTGTGGTGCATAACTATCAcaatttgaa
actttctttttttcagttccAGACGTTGTTTATGAGTGTGGTGATGAATG
CAAATcgttgaaaaagaaattatacGCAGCTGCAGCGTTCGCTATTTTGT
TTCTGGTTGTTATTTTGGTTCTTGGTGGGTTGTTGTACAGACAACATCAA
ATCAGTCGTGACTATAGAGATGATCCTTCCTTGTCAAGATTGATTTAATT
TCTGTTCAAAAATTGTGGTGTTGTtgatttctaactttttttaagACCCC
TCTATAGTTTATTGTATGTCCAATAAAAAGTTGGCATAATGTATGTATAT
AGTATTTAGAGCCTGGAAGCTATGGTTTTTAGAATGGTGAAACACTGGAA
AATCTATGCAACCAATTGTATGACAAAAATTGAATGGACAAATACTGATC
GTTCTGCACAATAAAGAATTTCTGTTCGTATGAATTCTATCCTTATTTTT
CTTGACACTGTTAATTCCTAAAActgaaaatggtaaaatttaaaataatt
tttgtattttgtatgcgaccaaatatttttcttatctCCATGTTAAAAAG
ATAAACTAAATCAAtgtttttgagagaaaaaatggCTATTATACTCCAAG
TTACAATAAAGGTCGACAAGAATCCAAAGTTCTAAgaaatttggtttgtt
ttttgggCACAAAAATACTGACTTTGGAGATTATAACTTGATGATTCTGA
GCTATCTAAATAACTTTGATCAGTCTTGAAAAAGGTGGGTGGGGCTTTGG
AAAAATTTCTTATGGGAATATTAAGTTTCAGTTCTGTATTATTAATATTT
AATAaagtaaacttttttgactcacattgtaaagaattttttaaactatt
tttgtCAGcagaattttcttttcttttttttttaagttcagTTGATATAT
TATGGACGCCTGGTGTCTCATTTAGCCTACATGGTGGGATAGCCCATGGC
GAAATGTCTGATATTTTACACAATAGAtttctttttcataaaattatttt
agagcttgtttttgtaaattttgttacagtttATGTTAAGGGATAACAGT
GCTTTTGGAATATCATAAACGttcaatgtttcaaaaaaagctgTGTTATT
CTAAAACACTACATAGTTTTGATTGGTTCCTTTGGTGATCTGAACTGTCC
TAGTGCTTTTACACGTGTTTGTAAATTAGTTAGtaatatgacgtcattta
acgttagataaacgttgaaacaaagaTGCGTACTGCATTTGTTGCTAAAG
TCAATTCACtttaatagatcttatcggagtttttgatttttctaaaaagc
gaTGCactgtgggattgtttcgggggtattacaatggaaatctcttagga
atatCTTAGGAAacatcccacaatgcatcgctgttttagaaaattcaaaa
actccgataaggtctattgtgtaatgtttcaaaaaaagctgTGTTATTCT
TAAACATTACATGATTTTGATTGGGTCCTTTGCAGATCTGCACTGTCCTA
CTGAGTTTACACGTGTTTGCCTTGTGTAATCAATTGTTTAGTAATCTGGA
ACATCTGATTAACAAAAAGAAatgaacatgttaagaaaattatcaagttt
aaaactcaaaaagttaaaaacatctgaaggctttaaaaactttgtatgtt
cttataaaaaacgtgcagcTACATTATCATGCTAATCGCAATTTTATGTA
TtatatatcaaaacatttgtaattaaaattttccagtaTATAATATCTTT
ACAATGCAttcttgaagaaaaaaacacgttttataaaaaccaaaacACAA
TGTCGTCATTTCCTTCATTtgcattttatattttcacCCAAGTCTCCACA
GAAAAGTCAATCTCTCG Coding sequence (CDS) from alignment at scaffold_512:172674..177490+ >TCONS_00070023 ID=TCONS_00070023|Name=TCONS_00070023|organism=Clytia hemisphaerica|type=CDS|length=1971bp|location=Sequence derived from alignment at scaffold_512:172674..177490+ (Clytia hemisphaerica)
ATGTACCTCCAAAGTTTATTAACGATCATCATATCATGCACTCTTATCAG
TGCTCAAACTGATAATACAGAAGttgAAGTGACAGCAACTATTCCTATAT
TGGTGATTCAGTCATCCGAATTACAAGAAGACAAAAATGCATCATCAATC
CCTATATCTGCTACAATCCAACCAACCACCCATGTTGTTCTGCCTGATTA
TACGACAATAACAGCAGTCACATCTGTAGCTGGAAATAGCAGTTCTGCAA
CTATGCAGATCTCTTCAAGCAGTCATTCAGTCTTCATCTCAACTGAGATA
ATCTCATCTGAATCCATTTATTCTACATCACATCCAGCATCAGAATCACT
TTTTGTATCTTCATCAAGCCAATCGGATTCAATTCAAGTTTCCACATCTA
TTGACCCTTGGATTGCATCTTCCTCAAATGTGGTTCTCTCATCCTCTGCA
ACAGTTTATCCTACCACCTCTGCAGttccAGACGTTGTTTATGAGTGTGG
TGATGAATGCAAATcgttgaaaaagaaattatacGCAGCTGCAGCGTTCG
CTATTTTGTTTCTGGTTGTTATTTTGGTTCTTGGTGGGTTGTTGTACAGA
CAACATCAAATCAGTCGTGACTATAGAGATGATCCTTCCTTGTCAAGATT
GATTTAAATGTACCTCCAAAGTTTATTAACGATCATCATATCATGCACTC
TTATCAGTGCTCAAACTGATAATACAGAAGttgAAGTGACAGCAACTATT
CCTATATTGGTGATTCAGTCATCCGAATTACAAGAAGACAAAAATGCATC
ATCAATCCCTATATCTGCTACAATCCAACCAACCACCCATGTTGTTCTGC
CTGATTATACGACAATAACAGCAGTCACATCTGTAGCTGGAAATAGCAGT
TCTGCAACTATGCAGATCTCTTCAAGCAGTCATTCAGTCTTCATCTCAAC
TGAGATAATCTCATCTGAATCCATTTATTCTACATCACATCCAGCATCAG
AATCACTTTTTGTATCTTCATCAAGCCAATCGGATTCAATTCAAGTTTCC
ACATCTATTGACCCTTGGATTGCATCTTCCTCAAATGTGGTTCTCTCATC
CTCTGCAACAGTTTATCCTACCACCTCTGCAGttccAGACGTTGTTTATG
AGTGTGGTGATGAATGCAAATcgttgaaaaagaaattatacGCAGCTGCA
GCGTTCGCTATTTTGTTTCTGGTTGTTATTTTGGTTCTTGGTGGGTTGTT
GTACAGACAACATCAAATCAGTCGTGACTATAGAGATGATCCTTCCTTGT
CAAGATTGATTTAAATGTACCTCCAAAGTTTATTAACGATCATCATATCA
TGCACTCTTATCAGTGCTCAAACTGATAATACAGAAGttgAAGTGACAGC
AACTATTCCTATATTGGTGATTCAGTCATCCGAATTACAAGAAGACAAAA
ATGCATCATCAATCCCTATATCTGCTACAATCCAACCAACCACCCATGTT
GTTCTGCCTGATTATACGACAATAACAGCAGTCACATCTGTAGCTGGAAA
TAGCAGTTCTGCAACTATGCAGATCTCTTCAAGCAGTCATTCAGTCTTCA
TCTCAACTGAGATAATCTCATCTGAATCCATTTATTCTACATCACATCCA
GCATCAGAATCACTTTTTGTATCTTCATCAAGCCAATCGGATTCAATTCA
AGTTTCCACATCTATTGACCCTTGGATTGCATCTTCCTCAAATGTGGTTC
TCTCATCCTCTGCAACAGTTTATCCTACCACCTCTGCAGttccAGACGTT
GTTTATGAGTGTGGTGATGAATGCAAATcgttgaaaaagaaattatacGC
AGCTGCAGCGTTCGCTATTTTGTTTCTGGTTGTTATTTTGGTTCTTGGTG
GGTTGTTGTACAGACAACATCAAATCAGTCGTGACTATAGAGATGATCCT
TCCTTGTCAAGATTGATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070023-exon-scaffold_512-1491911889:172674..172953 | TCONS_00070023-exon-scaffold_512-1491911889:172674..172953 | Clytia hemisphaerica | exon |
| TCONS_00070023-exon-scaffold_512-1510915933:172674..172953 | TCONS_00070023-exon-scaffold_512-1510915933:172674..172953 | Clytia hemisphaerica | exon |
| TCONS_00070023-exon-scaffold_512-1575043694:172674..172953 | TCONS_00070023-exon-scaffold_512-1575043694:172674..172953 | Clytia hemisphaerica | exon |
| TCONS_00070023-exon-scaffold_512-1491911889:174561..174962 | TCONS_00070023-exon-scaffold_512-1491911889:174561..174962 | Clytia hemisphaerica | exon |
| TCONS_00070023-exon-scaffold_512-1510915933:174561..174962 | TCONS_00070023-exon-scaffold_512-1510915933:174561..174962 | Clytia hemisphaerica | exon |
| TCONS_00070023-exon-scaffold_512-1575043694:174561..174962 | TCONS_00070023-exon-scaffold_512-1575043694:174561..174962 | Clytia hemisphaerica | exon |
| TCONS_00070023-exon-scaffold_512-1491911889:175640..177490 | TCONS_00070023-exon-scaffold_512-1491911889:175640..177490 | Clytia hemisphaerica | exon |
| TCONS_00070023-exon-scaffold_512-1510915933:175640..177490 | TCONS_00070023-exon-scaffold_512-1510915933:175640..177490 | Clytia hemisphaerica | exon |
| TCONS_00070023-exon-scaffold_512-1575043694:175640..177490 | TCONS_00070023-exon-scaffold_512-1575043694:175640..177490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:172674..177490 + |
Blast
The following BLAST results are available for this feature:
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