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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070022 ID=TCONS_00070022|Name=TCONS_00070022|organism=Clytia hemisphaerica|type=transcript|length=724bp
AAGTgtgcaaagtttttttgttaattgtattttttttttcatgcttgagt
catttaacattgttattattcaacatgacattaaAATTAGGGAAAGGTCT
ATTTCTATTTGTTATGAAAGTCCTTTTGCTCACCTTATTCTTTTAGGACG
TAAGATACCTGAAGATACTCCTTGTAAGACATATTTTAATTGAGTTGCTG
TATCATCATGTACCTCCAAAGTTTATTAACGATCATCATATCATGCACTC
TTATCAGTGCTCAAACTGATAATACAGAAGttgAAGTGACAGCAACTATT
CCTATATTGGTGATTCAGTCATCCGAATTACAAGAAGACAAAAATGCATC
ATCAATCCCTATATCTGCTACAATCCAACCAACCACCCATGTTGTTCTGC
CTGATTATACGACAATAACAGCAGTCACATCTGTAGCTGGAAATAGCAGT
TCTGCAACTATGCAGATCTCTTCAAGCAGTCATTCAGTCTTCATCTCAAC
TGAGATAATCTCATCTGAATCCATTTATTCTACATCACATCCAGCATCAG
AATCACTTTTTGTATCTTCATCAAGCCAATCGGATTCAATTCAAGTTTCC
ACATCTATTGACCCTTGGATTGCATCTTCCTCAAATGTGGTTCTCTCATC
CTCTGCAACAGTTTATCCTACCACCTCTGCAGttccAGACGTTGTTTATG
AGTGTGGTGATGAATGCAAATCGN Run BLAST on NCBI transcript from alignment at scaffold_512:172674..175571+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070022 ID=TCONS_00070022|Name=TCONS_00070022|organism=Clytia hemisphaerica|type=transcript|length=2898bp|location=Sequence derived from alignment at scaffold_512:172674..175571+ (Clytia hemisphaerica)
AAGTgtgcaaagtttttttgttaattgtattttttttttcatgcttgagt
catttaacattgttattattcaacatgacattaaAATTAGGGAAAGGTCT
ATTTCTATTTGTTATGAAAGTCCTTTTGCTCACCTTATTCTTTTAGGACG
TAAGATACCTGAAGATACTCCTTGTAAGACATATTTTAATTGAGTTGCTG
TATCATCATGTACCTCCAAAGTTTATTAACGATCATCATATCATGCACTC
TTATCAGTGCTCAAACTGATAATACAGAAGGtaaagaaaaaatcttgttA
TATACTCTATGAGATCTCAAAcgttttggaaatattttcagctatcactc
gatgatttttttttctattgctatttggttgagttgcaggaggctttgag
gcgcATCAACCAATGTCAATGACCACTACACCACAGCTCTGAATAGCCTG
GTTTTAGCTTATTATCTTATTTTGGGGGCTTTTTTTAGGTAAAATTTTGT
ACCACGCCCCTTTATTTGGGACATTACATGTTACGAgtacatgctttttt
ataaaaacctgTATATACCAGGCTTGGTTCTTCTTATTCTTCATGCatga
tttttatgtttatataaattttaaaatgctcttaaaaataACTAAAGtgt
gtctcaaaataatttgcagctgagacaaaaatggctgtaacttttgataa
aatttgaatgaagttgcgattttgtgctcgttgaaaagatatttgtgaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgaaaa
attttttcaaaaatattcattcaatcaaaagatatcaaacaaagtttgtt
attggttgattgacaaaaggctgtttatttgtcgttttttactactttat
agagtcaaccagcaatagtttttgtttgatatcttttgattgaataaata
attttgaaaaatctttctccTTAGTAAAAGTACTTTAATACAGAAATTAt
acgtaaaattttgaaattttgaaactttttcccacagttgAAGTGACAGC
AACTATTCCTATATTGGTGATTCAGTCATCCGAATTACAAGAAGACAAAA
ATGCATCATCAATCCCTATATCTGCTACAATCCAACCAACCACCCATGTT
GTTCTGCCTGATTATACGACAATAACAGCAGTCACATCTGTAGCTGGAAA
TAGCAGTTCTGCAACTATGCAGATCTCTTCAAGCAGTCATTCAGTCTTCA
TCTCAACTGAGATAATCTCATCTGAATCCATTTATTCTACATCACATCCA
GCATCAGAATCACTTTTTGTATCTTCATCAAGCCAATCGGATTCAATTCA
AGTTTCCACATCTATTGACCCTTGGATTGCATCTTCCTCAAATGTGGTTC
TCTCATCCTCTGCAACAGTTTATCCTACCACCTCTGCAGGTATGacattt
taaaaagtttcaaatagTCATAAGAATTAAATAAAACGTTAAAACATACT
CTCTAACGATATTTAGACCTTATTTACATATCTTTATTAAGTTGATAAAG
ATCTGTTAAGGTCGAAATATCATTGGTAAGAAATTAACAACTTTCTTAGT
TTCAATAGTTGGCTTTTTATGTTTGATTCATACAGTCATGAGTATTCAAT
TACCGAAATGTATATCATCTTTTTGCTTGGGACCCCCTTTTTTCGTTATT
CTTGTTTTGCTTTTATTACTAGCCCATTGTTATTGTCATTTAGggaattt
ttaaacattttgccTTTTTAAGTCAGGTCTAGATAAtggaaattatcttt
tcaataactAATTTGGACTCATTCGGCAAGTTTTGCAGAAAGACCTGATA
TGTCCTACCGTTTGCCAAGATTCTTTCAACAAGACTTAATTCAGGATTTT
TACTGCTCGCAAAATTGTTTAATCAAAAATTGTTGTCACTAAAATTACTG
TATTTGAAATATCTGTGGTGCATAACTATCAcaatttgaaactttctttt
tttcagttccAGACGTTGTTTATGAGTGTGGTGATGAATGCAAATCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070022-exon-scaffold_512-1491911889:172674..172953 | TCONS_00070022-exon-scaffold_512-1491911889:172674..172953 | Clytia hemisphaerica | exon |
| TCONS_00070022-exon-scaffold_512-1510915933:172674..172953 | TCONS_00070022-exon-scaffold_512-1510915933:172674..172953 | Clytia hemisphaerica | exon |
| TCONS_00070022-exon-scaffold_512-1575043694:172674..172953 | TCONS_00070022-exon-scaffold_512-1575043694:172674..172953 | Clytia hemisphaerica | exon |
| TCONS_00070022-exon-scaffold_512-1491911889:174561..174962 | TCONS_00070022-exon-scaffold_512-1491911889:174561..174962 | Clytia hemisphaerica | exon |
| TCONS_00070022-exon-scaffold_512-1510915933:174561..174962 | TCONS_00070022-exon-scaffold_512-1510915933:174561..174962 | Clytia hemisphaerica | exon |
| TCONS_00070022-exon-scaffold_512-1575043694:174561..174962 | TCONS_00070022-exon-scaffold_512-1575043694:174561..174962 | Clytia hemisphaerica | exon |
| TCONS_00070022-exon-scaffold_512-1491911889:175530..175571 | TCONS_00070022-exon-scaffold_512-1491911889:175530..175571 | Clytia hemisphaerica | exon |
| TCONS_00070022-exon-scaffold_512-1510915933:175530..175571 | TCONS_00070022-exon-scaffold_512-1510915933:175530..175571 | Clytia hemisphaerica | exon |
| TCONS_00070022-exon-scaffold_512-1575043694:175530..175571 | TCONS_00070022-exon-scaffold_512-1575043694:175530..175571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:172674..175571 + |
Blast
The following BLAST results are available for this feature:
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