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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070021 ID=TCONS_00070021|Name=TCONS_00070021|organism=Clytia hemisphaerica|type=transcript|length=938bp
CAAATTCACTTCAAAAAGAAGACTTTTATCTGCGACACCCAGTAGATATA
TTGCTTCCGAGCCCTAATCTCAGCCTTAGCTATGTTTAAATTATTTATAA
GTGTTATgcatataaataaaaaaatgtgtatactTCCGTACCGGAACATG
CTGCAACAACAATTTGTCTTTCAATTTTCGTCCTTGTTTTGATTCACGAT
TAATTATTTCTTGATCTTCTGGAGTACACACAAGGTTACCACAGAACATG
CAAGGCCCTTGTAAAATAGAGAGAAATTATTTAGCCTATGGCTCACTATT
GATTATTTCTTGATCGTCTGGGGTACACACAAGGTTACCACAGAACATGC
AAGGCCCTTGTAAATTAGAAAGAAATGTTTTAGTCTATTACAGTGTGAAT
GAAAAAGTTCAGTGGTTCCATCTTATTGTTCCAAAGAATGTCaacaaata
attattttggctggcactgcaaaatatttaaagCTATGATCCATTCTTAT
CtacataaaaaaatcaaagtgtTTGTTGCAAAATTATAGTTTCTCCAAAA
AAAGTGCTAGTATTAAAAGTGACAAGCtatagatgctgaatggacctacc
tgatgatgaaagttagatagaaatgcgaggagaaaaatgaaaaaaatcag
tcagaaaatatagcgtttagcgaaaatgcataacacaattaattcatcat
tgattgttgatggggggtagagggaagggttgtagggaaaaaataaatag
aaagttctggtcgcaaaaatcagttttattgacaattgaatgatgcttga
tggtgagcattgttatcaataatgtttttgtctgaaaaacATAGAAANga
tggtgagcattgttatcaataatgtttttgtgtaaaaaacatagaaatga
atataaggaaaaaatccaatgaaaatctgcaaacacgg Run BLAST on NCBI transcript from alignment at scaffold_512:127516..128563+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070021 ID=TCONS_00070021|Name=TCONS_00070021|organism=Clytia hemisphaerica|type=transcript|length=1048bp|location=Sequence derived from alignment at scaffold_512:127516..128563+ (Clytia hemisphaerica)
CAAATTCACTTCAAAAAGAAGACTTTTATCTGCGACACCCAGTAGATATA
TTGCTTCCGAGCCCTAATCTCAGCCTTAGCTATGTTTAAATTATTTATAA
GTGTTATgcatataaataaaaaaatgtgtatactTCCGTACCGGAACATG
CTGCAACAACAATTTGTCTTTCAATTTTCGTCCTTGTTTTGATTCACGAT
TAATTATTTCTTGATCTTCTGGAGTACACACAAGGTTACCACAGAACATG
CAAGGCCCTTGTAAAATAGAGAGAAATTATTTAGCCTATGGCTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACACACAAGGTTACC
ACAGAACATGCAAGGCCCTTGTAAAATAGAGAGAAATTATTTAGCCTATG
GCTCACTATTGATTATTTCTTGATCGTCTGGGGTACACACAAGGTTACCA
CAGAACATGCAAGGCCCTTGTAAATTAGAAAGAAATGTTTTAGTCTATTA
CAGTGTGAATGAAAAAGTTCAGTGGTTCCATCTTATTGTTCCAAAGAATG
TCaacaaataattattttggctggcactgcaaaatatttaaagCTATGAT
CCATTCTTATCtacataaaaaaatcaaagtgtTTGTTGCAAAATTATAGT
TTCTCCAAAAAAAGTGCTAGTATTAAAAGTGACAAGCtatagatgctgaa
tggacctacctgatgatgaaagttagatagaaatgcgaggagaaaaatga
aaaaaatcagtcagaaaatatagcgtttagcgaaaatgcataacacaatt
aattcatcattgattgttgatggggggtagagggaagggttgtagggaaa
aaataaatagaaagttctggtcgcaaaaatcagttttattgacaattgaa
tgatgcttgatggtgagcattgttatcaataatgtttttgtctgaaaaac
ATAGAAANgatggtgagcattgttatcaataatgtttttgtgtaaaaaac
atagaaatgaatataaggaaaaaatccaatgaaaatctgcaaacacgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070021-exon-scaffold_512-1491911889:127516..127749 | TCONS_00070021-exon-scaffold_512-1491911889:127516..127749 | Clytia hemisphaerica | exon |
| TCONS_00070021-exon-scaffold_512-1510915933:127516..127749 | TCONS_00070021-exon-scaffold_512-1510915933:127516..127749 | Clytia hemisphaerica | exon |
| TCONS_00070021-exon-scaffold_512-1575043694:127516..127749 | TCONS_00070021-exon-scaffold_512-1575043694:127516..127749 | Clytia hemisphaerica | exon |
| TCONS_00070021-exon-scaffold_512-1491911889:127860..128563 | TCONS_00070021-exon-scaffold_512-1491911889:127860..128563 | Clytia hemisphaerica | exon |
| TCONS_00070021-exon-scaffold_512-1510915933:127860..128563 | TCONS_00070021-exon-scaffold_512-1510915933:127860..128563 | Clytia hemisphaerica | exon |
| TCONS_00070021-exon-scaffold_512-1575043694:127860..128563 | TCONS_00070021-exon-scaffold_512-1575043694:127860..128563 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_512 | supercontig | scaffold_512:127516..128563 + |
Blast
The following BLAST results are available for this feature:
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