TCONS_00070018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070018
Unique NameTCONS_00070018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070018 ID=TCONS_00070018|Name=TCONS_00070018|organism=Clytia hemisphaerica|type=transcript|length=1387bp
GCTAAATGTAAACCCATGGAAATTTAAAGCTAGATATTTTGCAATTCACA
GGACACAGACGCTGGAAGAAATGCTACATCACGTAATCAAAATAATTCGC
CAGTCTCCCTAGCACGAACATCACGCGAACATGATAGGCACGTATCACAT
ACCCGATCACCCAACAAACGTAAATCACAGCCGGAATCATCGCCAATATC
AAGCAGGGGCGGAAGAACTGGTTCCCAACCCTCCAGCTCAAGGGAAGATG
TAAACAACACCAGGACGGAGAGACGTGAAGAAATGCAAGAAGAGGGAGAA
TCAGTGCAATGGGACTCCATCGACGATGTTGATGATGATAATAATCGAAA
TAGAAGAGTCGGGAATAGAGatgtttcattcaaaaagaagaGTGCGCGTG
TGAAATTTCAAGCATACGAAGAAAAGAGTCTAATCGCAGGTATCGAACGG
TTTGGAGTCGGCGATTGGAATAACATTTTGAAACACTTCAAATTTCACGA
ATCAAGAACGAACGTTGCGCTCAAAGATAAATACAGGACTATGAAGAGAC
AAGGGTTGATACAATAANGAATAATTCCTTATAATCTCACCGAATAAAAC
CGAAATCAATGAATCTGCGAATCCTTGTAAAGCACGTCCTAACATGACAA
TTAATTGATGTTTGGGTGTGGCATATATTATGTTCCCGCATGCTGCAAAT
AGACTAGTTGCCAATAAGATGAGTCGAATGTTTTTAGTGTGGTCTGCATA
TTTGGTGATGGTTAAACAGCCGATCATAGAAGCCAAAGGATAAGTTGATG
CTATGATCCCAAACCACATTTGAGGATTTGGTGCTTTCACTTTGTCTTTG
ATATAGTTGAGGAGAGTTGGGATAGATAGACCGTATTCTAACCCCAAAAC
AAGAGAAAATAAACAGAATGCTCTAAAAGTTGTTCGGCGTTTCTTTTCCC
ATAATTTAATCATCTGAAGTTGTTCTTGGTGGTTAAGCTCAACGCCCTGC
ATTTCACTTGATGATATCTTACTTTATTcctatcaaaacaaacaaaataa
tgtAGGATGGCCAAACTTTCTCATTTACAGGAAACACACATCTTTACGCA
CCAAACGAtctcaataaaataaaaaacacttttataaAACAAATTCTACC
ACTTTGGGTGTTTCACACTGTTGAAGTAAAACAGTTCTTTTCTCAGTGAG
AAGACAGCCATGAAGTGTGTAGATCAACGTGAATTCGTTGTATTTCGAAA
AGTTAGGTAATTCAAGTTTATTGTTTAAACGTTTCAAGTTGCTTCAAACC
TACGCCAAAGAAACAAAGGCAATGATTACTATCGCTTGAACGTTTCACGT
ACATCAGCAAGAAGTAGTAAAAGTTCTATTCTTTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_512:60316..62317+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070018 ID=TCONS_00070018|Name=TCONS_00070018|organism=Clytia hemisphaerica|type=transcript|length=2002bp|location=Sequence derived from alignment at scaffold_512:60316..62317+ (Clytia hemisphaerica)
GCTAAATGTAAACCCATGGAAATTTAAAGCTAGATATTTTGCAATTCACA
GGACACAGACGCTGGAAGAAATGCTACATCACGTAATCAAAATAATTCGC
CAGTCTCCCTAGCACGAACATCACGCGAACATGATAGGCACGTATCACAT
ACCCGATCACCCAACAAACGTAAATCACAGCCGGAATCATCGCCAATATC
AAGCAGGGGCGGAAGGTAAGTGAGAGATATTTCAATAACAACAGAGCAGA
TTCCCGCCCCgctattttgctttttctttgcttttgcTGTCTGGTGGGTT
TCAAATTCTTTTATCAAAAACGATATTTCAATTTAAGACGATAGCTGATA
CAATTATATGTTTTTCCGTTTCCATAACTCTTTTCTCTGTCTGGTGTGAC
AAGAGTAATCTCTCTTTTTAAAAGtggtaattcttttcaataatttggAT
CCATTAccatcaaattttttgaaatcttttctcTAGAACTGGTTCCCAAC
CCTCCAGCTCAAGGGAAGATGTAAACAACACCAGGACGGAGAGACGTGAA
GAAATGCAAGAAGAGGGAGAATCAGTGCAATGGGACTCCATCGACGATGT
TGATGATGATAATAATCGAAATAGAAGAGTCGGGAATAGAGGTTGGTGAT
TTTGTCTGTCTCTTTATTGTATGGGACCTGTTTTTAGAAATGAGTAAATT
CAATAATATCAGTTGTCTCGGGTTTGGTCATCCTTTTTTATACtgttttt
ctatgtttgttagaataaatttttgtttgaagagGAAAGAAGAAAGTTTG
TATAAGGTATAGAATGTAACCAACGTCTTAAAATTCCTCCGGGAATGTAG
CCTGGAGTATTAAAATTTTGAGAGAAGACTTTAGAATAAATCTGGATTAC
catattttagcattttaatCTGTTGGAAATAACGTAAACACGTAGCACTT
TTAAAACATTTATTTCTCTTGTTTTACCAATTTAgatgtttcattcaaaa
agaagaGTGCGCGTGTGAAATTTCAAGCATACGAAGAAAAGAGTCTAATC
GCAGGTATCGAACGGTTTGGAGTCGGCGATTGGAATAACATTTTGAAACA
CTTCAAATTTCACGAATCAAGAACGAACGTTGCGCTCAAAGATAAATACA
GGACTATGAAGAGACAAGGGTTGATACAATAANGAATAATTCCTTATAAT
CTCACCGAATAAAACCGAAATCAATGAATCTGCGAATCCTTGTAAAGCAC
GTCCTAACATGACAATTAATTGATGTTTGGGTGTGGCATATATTATGTTC
CCGCATGCTGCAAATAGACTAGTTGCCAATAAGATGAGTCGAATGTTTTT
AGTGTGGTCTGCATATTTGGTGATGGTTAAACAGCCGATCATAGAAGCCA
AAGGATAAGTTGATGCTATGATCCCAAACCACATTTGAGGATTTGGTGCT
TTCACTTTGTCTTTGATATAGTTGAGGAGAGTTGGGATAGATAGACCGTA
TTCTAACCCCAAAACAAGAGAAAATAAACAGAATGCTCTAAAAGTTGTTC
GGCGTTTCTTTTCCCATAATTTAATCATCTGAAGTTGTTCTTGGTGGTTA
AGCTCAACGCCCTGCATTTCACTTGATGATATCTTACTTTATTcctatca
aaacaaacaaaataatgtAGGATGGCCAAACTTTCTCATTTACAGGAAAC
ACACATCTTTACGCACCAAACGAtctcaataaaataaaaaacacttttat
aaAACAAATTCTACCACTTTGGGTGTTTCACACTGTTGAAGTAAAACAGT
TCTTTTCTCAGTGAGAAGACAGCCATGAAGTGTGTAGATCAACGTGAATT
CGTTGTATTTCGAAAAGTTAGGTAATTCAAGTTTATTGTTTAAACGTTTC
AAGTTGCTTCAAACCTACGCCAAAGAAACAAAGGCAATGATTACTATCGC
TTGAACGTTTCACGTACATCAGCAAGAAGTAGTAAAAGTTCTATTCTTTT
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043590XLOC_043590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070018-exon-scaffold_512-1491911889:60316..60530TCONS_00070018-exon-scaffold_512-1491911889:60316..60530Clytia hemisphaericaexon
TCONS_00070018-exon-scaffold_512-1510915933:60316..60530TCONS_00070018-exon-scaffold_512-1510915933:60316..60530Clytia hemisphaericaexon
TCONS_00070018-exon-scaffold_512-1575043694:60316..60530TCONS_00070018-exon-scaffold_512-1575043694:60316..60530Clytia hemisphaericaexon
TCONS_00070018-exon-scaffold_512-1491911889:60802..60956TCONS_00070018-exon-scaffold_512-1491911889:60802..60956Clytia hemisphaericaexon
TCONS_00070018-exon-scaffold_512-1510915933:60802..60956TCONS_00070018-exon-scaffold_512-1510915933:60802..60956Clytia hemisphaericaexon
TCONS_00070018-exon-scaffold_512-1575043694:60802..60956TCONS_00070018-exon-scaffold_512-1575043694:60802..60956Clytia hemisphaericaexon
TCONS_00070018-exon-scaffold_512-1491911889:61301..62317TCONS_00070018-exon-scaffold_512-1491911889:61301..62317Clytia hemisphaericaexon
TCONS_00070018-exon-scaffold_512-1510915933:61301..62317TCONS_00070018-exon-scaffold_512-1510915933:61301..62317Clytia hemisphaericaexon
TCONS_00070018-exon-scaffold_512-1575043694:61301..62317TCONS_00070018-exon-scaffold_512-1575043694:61301..62317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_512supercontigscaffold_512:60316..62317 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.3094	20.0268	8.2804	6.16465	19.5268	19.8669	11.3998	14.2795	5.42315	6.40217	5.58343	4.30627	3.27104	3.20612	0.816319	1.09965	0.553285	1.15578	0.393049	0.438514	0.679936	0.531415	10.5809	9.1499	4.79937	8.68361	0.964489	0.754616	5.12563	6.59782
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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