TCONS_00070004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070004
Unique NameTCONS_00070004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070004 ID=TCONS_00070004|Name=TCONS_00070004|organism=Clytia hemisphaerica|type=transcript|length=386bp
GATATCGAAGCCCTTGTCAGTGAGGCCGAGACACTTCAATCGAGATTGCC
AAAGCCGGTCGAAAAGAAAACTATTGAAGCTCTATCGAAGCAATTTaaga
taaaaatggaaaaaggcGATGTTAACGGGGCAATCAAACTACTCACTAAC
AACATGAGTTGAGGCGTGCTACCACTGGACGATCAAACGATCAATCTCCT
TCGACAAAAAAAACCTGAAGATCGCGATACCAATGAAAACAACCTGCTCA
ATGGTCCAATTCAGCATATAGATCCGATTGTTTTTGAGTGTATTGATGAA
GAGATGGTATCGAAAGCAGCCTTATCGACACAAGGTGGATCGGGACCATC
GGGTATGGACGCAGATGGATGGCGTAAACCACTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_511:586911..587296

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070004 ID=TCONS_00070004|Name=TCONS_00070004|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at scaffold_511:586911..587296 (Clytia hemisphaerica)
GTAAGTGGTTTACGCCATCCATCTGCGTCCATACCCGATGGTCCCGATCC
ACCTTGTGTCGATAAGGCTGCTTTCGATACCATCTCTTCATCAATACACT
CAAAAACAATCGGATCTATATGCTGAATTGGACCATTGAGCAGGTTGTTT
TCATTGGTATCGCGATCTTCAGGTTTTTTTTGTCGAAGGAGATTGATCGT
TTGATCGTCCAGTGGTAGCACGCCTCAACTCATGTTGTTAGTGAGTAGTT
TGATTGCCCCGTTAACATCgcctttttccatttttatcttAAATTGCTTC
GATAGAGCTTCAATAGTTTTCTTTTCGACCGGCTTTGGCAATCTCGATTG
AAGTGTCTCGGCCTCACTGACAAGGGCTTCGATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043583XLOC_043583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070004-exon-scaffold_511-1491911889:586911..587296TCONS_00070004-exon-scaffold_511-1491911889:586911..587296Clytia hemisphaericaexon
TCONS_00070004-exon-scaffold_511-1510915933:586911..587296TCONS_00070004-exon-scaffold_511-1510915933:586911..587296Clytia hemisphaericaexon
TCONS_00070004-exon-scaffold_511-1575043694:586911..587296TCONS_00070004-exon-scaffold_511-1575043694:586911..587296Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:586911..587296 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0022	1.17276	1.13474	2.22033	1.08121	0.640792	1.28848	0.965008	0.675625	0.418435	0.203072	0.400474	0.799835	0.415318	0.796712	0.732852	5.26641	6.94016	1.27843	1.78371	0.193796	0.850742	0.459639	1.88045	2.36723	2.68889	1.64905	0	11.1236	3.17329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top