TCONS_00069999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069999
Unique NameTCONS_00069999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069999 ID=TCONS_00069999|Name=TCONS_00069999|organism=Clytia hemisphaerica|type=transcript|length=774bp
TCATCAATTCCAGGTATTTcaagttttccaaaaatatccCTCATTTCCAT
GGCAACATGaacaaaactttgacaaatCACAAAACCTGTGACAGCTTGAT
GTTCCACCCGAATATTCGAAAAAAGGTTAACTGAATCTTGTTCTCAACAT
TATTTTATTAATATCCAAATCTGCTCCAGTCATCTTGAAAAATTATGGAA
AAACACTTTTGCTGAATTAAATACTCctcaaatttttctaaatttaagcT
CAAATTTGGTATAGTCAGGTTGCTGGaccacttttttgaaaatcttagtC
AGAAGAATCTAAAACCTTTTAGAACTTGTTATATAACATCAAAGGATTCA
GAAAGGTTTTACCGATCATTTTCTATCCACCTCCTTTGCTCGTTTCCAGG
CCTTTTTAAGATTTCAAGCTTCTTatgtgcactgtaagggtcgtaaatag
caaagatgagaaaaattgctcTCTAACgatgtaaaatttggaaattcaGA
CCCTGTCTTGCctcaaaatggtaaaaaaatttcaagaaattgtcCCGTAA
GGGTCGACTTTTCgctcaaatttactcaaatttgcctGCAAGGGTCCAAA
TTCAAAGGCATAATTTTGGGCTGCTCatcatagtttctagaggggtcaac
cCCCCTTAAGTGGGCGTTTAAAGCGAGTTTTCTCCACAACAAAACCTCGA
ATCAACAATCGGAGGCACGGTTTTGCTATTCAACCTTTTCTGAATAGAAT
GACGTAGGTTTCAGAAATATCGAC
Run BLAST on NCBI

transcript from alignment at scaffold_511:411385..412158

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069999 ID=TCONS_00069999|Name=TCONS_00069999|organism=Clytia hemisphaerica|type=transcript|length=774bp|location=Sequence derived from alignment at scaffold_511:411385..412158 (Clytia hemisphaerica)
GTCGATATTTCTGAAACCTACGTCATTCTATTCAGAAAAGGTTGAATAGC
AAAACCGTGCCTCCGATTGTTGATTCGAGGTTTTGTTGTGGAGAAAACTC
GCTTTAAACGCCCACTTAAGGGGggttgacccctctagaaactatgatGA
GCAGCCCAAAATTATGCCTTTGAATTTGGACCCTTGCaggcaaatttgag
taaatttgagcGAAAAGTCGACCCTTACGGgacaatttcttgaaattttt
ttaccattttgagGCAAGACAGGGTCtgaatttccaaattttacatcGTT
AGAgagcaatttttctcatctttgctatttacgacccttacagtgcacat
AAGAAGCTTGAAATCTTAAAAAGGCCTGGAAACGAGCAAAGGAGGTGGAT
AGAAAATGATCGGTAAAACCTTTCTGAATCCTTTGATGTTATATAACAAG
TTCTAAAAGGTTTTAGATTCTTCTGactaagattttcaaaaaagtggtCC
AGCAACCTGACTATACCAAATTTGAgcttaaatttagaaaaatttgagGA
GTATTTAATTCAGCAAAAGTGTTTTTCCATAATTTTTCAAGATGACTGGA
GCAGATTTGGATATTAATAAAATAATGTTGAGAACAAGATTCAGTTAACC
TTTTTTCGAATATTCGGGTGGAACATCAAGCTGTCACAGGTTTTGTGatt
tgtcaaagttttgttCATGTTGCCATGGAAATGAGggatatttttggaaa
acttgAAATACCTGGAATTGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043578XLOC_043578Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069999-exon-scaffold_511-1491911889:411385..412158TCONS_00069999-exon-scaffold_511-1491911889:411385..412158Clytia hemisphaericaexon
TCONS_00069999-exon-scaffold_511-1510915933:411385..412158TCONS_00069999-exon-scaffold_511-1510915933:411385..412158Clytia hemisphaericaexon
TCONS_00069999-exon-scaffold_511-1575043694:411385..412158TCONS_00069999-exon-scaffold_511-1575043694:411385..412158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:411385..412158 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.376755	0.0612325	0.284387	0.626014	0.677433	0.736061	0.888026	0.906937	0.634968	0.52434	0.127234	0.627291	0.417613	0.390326	0.249589	0.0765279	0.282828	0.28989	0.1335	0.488942	0.667824	0.444193	0	0.196366	0.404505	0.601685	0.602707	0.459446	0.348474	0.710079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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