TCONS_00069995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069995
Unique NameTCONS_00069995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069995 ID=TCONS_00069995|Name=TCONS_00069995|organism=Clytia hemisphaerica|type=transcript|length=812bp
cccAGAATTTAGCATCCGAAGGTCCtgcgaaaaataagaaaaatatctaa
TGAAATATAACGATATGATAGTAACATAAGGAAACGAGACAGTCTAATtg
aaaaagttcttataaaacgtGTTTGTTTCACCAATTCACTCTGAGGAAGA
CCCTCTAATCATGTGTTTAGCGTCCATAAAAAGTTACGTGCAAAAACTAA
TGATCGGTTGATGAGTTTTATTATTCCCACTTCCATCGCACGCCCAGAAA
ATTAATGACCAATTTAAGCGCAATTCGTATCTTTGATGTCGTTAATTTCT
CGGCTCACACGAATTTGTCTCTtggtatttttcaacaaatggcacttcaa
attcaatgtttttgttttcaaatagcGCAGCATCCAGTCATGATGGTAGA
TCGTTGGAGTGACGGCAAATCATTACGAAGTTTAACATTTTACGAAGTTG
ACCTTTCTGAAATTGAGATCATGTTTCTTTCATGATGACTTGGCTGATTT
ACTTGTAACGTTTGTTTTCTGAAAGGCAATAACACAAATGTTATGAACAG
TAAGTTTGGTTGATCTATTTTTCATATTCctcgagaaataaagaaaaaac
ttgaaaatctgtccgaagtttccccgacctacggtaatttacaatcaatc
gaaccaatcgaacgttacttgaacgcaatcgaacacaatcgaatattacc
caagaatcggccgttcgattgagattcgattgcgttcggcaatcgaatcg
caatcattcgatcgcgttcaattgcgttcgattgcgttcgattggttcga
ttgcgatttccg
Run BLAST on NCBI

transcript from alignment at scaffold_511:310664..311475

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069995 ID=TCONS_00069995|Name=TCONS_00069995|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at scaffold_511:310664..311475 (Clytia hemisphaerica)
cggaaatcgcaatcgaaccaatcgaacgcaatcgaacgcaattgaacgcg
atcgaatgattgcgattcgattgccgaacgcaatcgaatctcaatcgaac
ggccgattcttgggtaatattcgattgtgttcgattgcgttcaagtaacg
ttcgattggttcgattgattgtaaattaccgtaggtcggggaaacttcgg
acagattttcaagttttttctttatttctcgagGAATATGAAAAATAGAT
CAACCAAACTTACTGTTCATAACATTTGTGTTATTGCCTTTCAGAAAACA
AACGTTACAAGTAAATCAGCCAAGTCATCATGAAAGAAACATGATCTCAA
TTTCAGAAAGGTCAACTTCGTAAAATGTTAAACTTCGTAATGATTTGCCG
TCACTCCAACGATCTACCATCATGACTGGATGCTGCgctatttgaaaaca
aaaacattgaatttgaagtgccatttgttgaaaaataccaAGAGACAAAT
TCGTGTGAGCCGAGAAATTAACGACATCAAAGATACGAATTGCGCTTAAA
TTGGTCATTAATTTTCTGGGCGTGCGATGGAAGTGGGAATAATAAAACTC
ATCAACCGATCATTAGTTTTTGCACGTAACTTTTTATGGACGCTAAACAC
ATGATTAGAGGGTCTTCCTCAGAGTGAATTGGTGAAACAAACacgtttta
taagaactttttcaATTAGACTGTCTCGTTTCCTTATGTTACTATCATAT
CGTTATATTTCAttagatatttttcttatttttcgcaGGACCTTCGGATG
CTAAATTCTggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043574XLOC_043574Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069995-exon-scaffold_511-1491911889:310664..311475TCONS_00069995-exon-scaffold_511-1491911889:310664..311475Clytia hemisphaericaexon
TCONS_00069995-exon-scaffold_511-1510915933:310664..311475TCONS_00069995-exon-scaffold_511-1510915933:310664..311475Clytia hemisphaericaexon
TCONS_00069995-exon-scaffold_511-1575043694:310664..311475TCONS_00069995-exon-scaffold_511-1575043694:310664..311475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:310664..311475 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31973	1.80176	1.1942	1.10914	5.50166	3.97177	3.53067	4.42022	1.70772	2.47456	2.11498	1.4798	0.818937	1.1115	1.2566	1.39754	1.84568	1.1549	1.41118	1.44438	1.7735	2.3281	1.48528	1.57734	1.68824	2.05128	2.14164	1.66216	2.01005	1.77882
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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