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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069987 ID=TCONS_00069987|Name=TCONS_00069987|organism=Clytia hemisphaerica|type=transcript|length=809bp
CCCTTATGCACGCCGTTCGAAACGGGAATtataaaattgtcaaaatttta
ttatcGCCATGGAAACGGTTTAGTctcagcctcgttttggagaaTAAATA
TGGCGAAAATGTGATGGATATTGCATTGTTGGAGAATAATAGACAAATCA
TTGaccttttgaaggaaaatggcTTCAGTGCACAAATTCCATACTTGACA
ACACCGACCAATCAGAGAGCGAGTACAGCATCACGTGGtacaagagaaaa
caaaaacattacatGTACACTTCGACGCGTCAAATCAAGTATTCCCGCCT
TCAAccgaaaacaaaacaagatttCAGACAGTGGCCTGTCAACCATTTCC
ACCACTTCAACTTATgatcaaacaaaacaaaacttgcATCATCTATTCGA
CCTATATTCCGAACAATTGAGTCCATCATACAAAGCAAGTGCTAAGCCAT
TGCCTCTTAATGATCGAGACGATTTAGAATCTTTAGACTCGCTTGCCTCA
ATCCAAAGTTTTCGAAGTGTGCGGTGTCGAGATAAAGATGAGAACGACAC
GATGGAACagtttttacaaaatctccgaCTGTCTGACCAATCGAGGCAGG
GAAGGGCTAGGAGGACTGGTGCTAGTCTCGTTGTTCCAAACAGCGGTCGA
TCGAGAAAGATTTCAGCACCTTGTTTCCCCAGTAATCCGATGTATAAACC
GGTTCTATCGAGACGAGAAATCAAGTCGGATTTGATAACTCATAAAGAAT
TTTAAATTAATattattatgaaaaaataataactgtTAACTTATTGGAGT
TGACAGAGT Run BLAST on NCBI protein sequence of TCONS_00069987-protein >TCONS_00069987-protein ID=TCONS_00069987-protein|Name=TCONS_00069987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
LMHAVRNGNYKIVKILLSPWKRFSLSLVLENKYGENVMDIALLENNRQII
DLLKENGFSAQIPYLTTPTNQRASTASRGTRENKNITCTLRRVKSSIPAF
NRKQNKISDSGLSTISTTSTYDQTKQNLHHLFDLYSEQLSPSYKASAKPL
PLNDRDDLESLDSLASIQSFRSVRCRDKDENDTMEQFLQNLRLSDQSRQG
RARRTGASLVVPNSGRSRKISAPCFPSNPMYKPVLSRREIKSDLITHKEF Run BLAST on NCBI transcript from alignment at scaffold_511:235453..236261 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069987 ID=TCONS_00069987|Name=TCONS_00069987|organism=Clytia hemisphaerica|type=transcript|length=809bp|location=Sequence derived from alignment at scaffold_511:235453..236261 (Clytia hemisphaerica)
ACTCTGTCAACTCCAATAAGTTAacagttattattttttcataataatAT
TAATTTAAAATTCTTTATGAGTTATCAAATCCGACTTGATTTCTCGTCTC
GATAGAACCGGTTTATACATCGGATTACTGGGGAAACAAGGTGCTGAAAT
CTTTCTCGATCGACCGCTGTTTGGAACAACGAGACTAGCACCAGTCCTCC
TAGCCCTTCCCTGCCTCGATTGGTCAGACAGtcggagattttgtaaaaac
tGTTCCATCGTGTCGTTCTCATCTTTATCTCGACACCGCACACTTCGAAA
ACTTTGGATTGAGGCAAGCGAGTCTAAAGATTCTAAATCGTCTCGATCAT
TAAGAGGCAATGGCTTAGCACTTGCTTTGTATGATGGACTCAATTGTTCG
GAATATAGGTCGAATAGATGATgcaagttttgttttgtttgatcATAAGT
TGAAGTGGTGGAAATGGTTGACAGGCCACTGTCTGaaatcttgttttgtt
ttcggTTGAAGGCGGGAATACTTGATTTGACGCGTCGAAGTGTACatgta
atgtttttgttttctcttgtaCCACGTGATGCTGTACTCGCTCTCTGATT
GGTCGGTGTTGTCAAGTATGGAATTTGTGCACTGAAgccattttccttca
aaaggtCAATGATTTGTCTATTATTCTCCAACAATGCAATATCCATCACA
TTTTCGCCATATTTAttctccaaaacgaggctgagACTAAACCGTTTCCA
TGGCgataataaaattttgacaattttataATTCCCGTTTCGAACGGCGT
GCATAAGGG Coding sequence (CDS) from alignment at scaffold_511:235453..236261 >TCONS_00069987 ID=TCONS_00069987|Name=TCONS_00069987|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_511:235453..236261 (Clytia hemisphaerica)
TTAAAATTCTTTATGAGTTATCAAATCCGACTTGATTTCTCGTCTCGATA
GAACCGGTTTATACATCGGATTACTGGGGAAACAAGGTGCTGAAATCTTT
CTCGATCGACCGCTGTTTGGAACAACGAGACTAGCACCAGTCCTCCTAGC
CCTTCCCTGCCTCGATTGGTCAGACAGtcggagattttgtaaaaactGTT
CCATCGTGTCGTTCTCATCTTTATCTCGACACCGCACACTTCGAAAACTT
TGGATTGAGGCAAGCGAGTCTAAAGATTCTAAATCGTCTCGATCATTAAG
AGGCAATGGCTTAGCACTTGCTTTGTATGATGGACTCAATTGTTCGGAAT
ATAGGTCGAATAGATGATgcaagttttgttttgtttgatcATAAGTTGAA
GTGGTGGAAATGGTTGACAGGCCACTGTCTGaaatcttgttttgttttcg
gTTGAAGGCGGGAATACTTGATTTGACGCGTCGAAGTGTACatgtaatgt
ttttgttttctcttgtaCCACGTGATGCTGTACTCGCTCTCTGATTGGTC
GGTGTTGTCAAGTATGGAATTTGTGCACTGAAgccattttccttcaaaag
gtCAATGATTTGTCTATTATTCTCCAACAATGCAATATCCATCACATTTT
CGCCATATTTAttctccaaaacgaggctgagACTAAACCGTTTCCATGGC
gataataaaattttgacaattttataATTCCCGTTTCGAACGGCGTGCAT
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069987-exon-scaffold_511-1491911889:235453..236261 | TCONS_00069987-exon-scaffold_511-1491911889:235453..236261 | Clytia hemisphaerica | exon |
| TCONS_00069987-exon-scaffold_511-1510915933:235453..236261 | TCONS_00069987-exon-scaffold_511-1510915933:235453..236261 | Clytia hemisphaerica | exon |
| TCONS_00069987-exon-scaffold_511-1575043694:235453..236261 | TCONS_00069987-exon-scaffold_511-1575043694:235453..236261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:235453..236261 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020683 | Ankyrin_rpt-contain_dom |
Blast
The following BLAST results are available for this feature:
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