TCONS_00069983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069983
Unique NameTCONS_00069983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069983 ID=TCONS_00069983|Name=TCONS_00069983|organism=Clytia hemisphaerica|type=transcript|length=578bp
ATACGTTCAGGTAATATTCCCATATAAATAGCTTCTTCAGTGGATCGTAT
AACCTTGCTAAAATCTGGATCATTTTCAATATTGTTCACAAAGGGTGAAT
CAGAGTCACTATCTGTACATTTAGAAAGCAGAGGACTCTGCTCAGAGTTA
CTTGGATAAACTGCATAGTGATTGTTTGAACTAGAATTCCTAGAATTCTG
GCGATAGGGTGAAGACATGGGCTCTTCCTCTGAGATTTGATTGTTTACAA
GTTTTTCCTCCTCCTCCCTTTCTCTGGCAGCTTGTTCTTCAGGTGTTGCT
AGGTTTACAAGAACATTCTTTGATTTCACCATGCCGGACATTTGAAAATT
GATAGCTATTACAAAATGCTTGTGATAATTGCATGACCACTAATACAATG
TCTTTTGTTTACtcaaagaaaacaaactttttggagactgttcatctaat
gtttccagatcatctaaaaagaacgacaaataactatgaaaaagcgacaa
aaagaacgacaaatttttaaagaacgacaaattccATATttcgccatcca
caaccccgaccaaaAGTGACTGTTCCAC
Run BLAST on NCBI

protein sequence of TCONS_00069983-protein

>TCONS_00069983-protein ID=TCONS_00069983-protein|Name=TCONS_00069983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MSGMVKSKNVLVNLATPEEQAAREREEEEKLVNNQISEEEPMSSPYRQNS
RNSSSNNHYAVYPSNSEQSPLLSKCTDSDSDSPFVNNIENDPDFSKVIRS
TEEAIYMGILPER
Run BLAST on NCBI

transcript from alignment at scaffold_511:86204..86781

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069983 ID=TCONS_00069983|Name=TCONS_00069983|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at scaffold_511:86204..86781 (Clytia hemisphaerica)
GTGGAACAGTCACTtttggtcggggttgtggatggcgaaATATggaattt
gtcgttctttaaaaatttgtcgttctttttgtcgctttttcatagttatt
tgtcgttctttttagatgatctggaaacattagatgaacagtctccaaaa
agtttgttttctttgaGTAAACAAAAGACATTGTATTAGTGGTCATGCAA
TTATCACAAGCATTTTGTAATAGCTATCAATTTTCAAATGTCCGGCATGG
TGAAATCAAAGAATGTTCTTGTAAACCTAGCAACACCTGAAGAACAAGCT
GCCAGAGAAAGGGAGGAGGAGGAAAAACTTGTAAACAATCAAATCTCAGA
GGAAGAGCCCATGTCTTCACCCTATCGCCAGAATTCTAGGAATTCTAGTT
CAAACAATCACTATGCAGTTTATCCAAGTAACTCTGAGCAGAGTCCTCTG
CTTTCTAAATGTACAGATAGTGACTCTGATTCACCCTTTGTGAACAATAT
TGAAAATGATCCAGATTTTAGCAAGGTTATACGATCCACTGAAGAAGCTA
TTTATATGGGAATATTACCTGAACGTAT

Coding sequence (CDS) from alignment at scaffold_511:86204..86781

>TCONS_00069983 ID=TCONS_00069983|Name=TCONS_00069983|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_511:86204..86781 (Clytia hemisphaerica)
ATGTCCGGCATGGTGAAATCAAAGAATGTTCTTGTAAACCTAGCAACACC
TGAAGAACAAGCTGCCAGAGAAAGGGAGGAGGAGGAAAAACTTGTAAACA
ATCAAATCTCAGAGGAAGAGCCCATGTCTTCACCCTATCGCCAGAATTCT
AGGAATTCTAGTTCAAACAATCACTATGCAGTTTATCCAAGTAACTCTGA
GCAGAGTCCTCTGCTTTCTAAATGTACAGATAGTGACTCTGATTCACCCT
TTGTGAACAATATTGAAAATGATCCAGATTTTAGCAAGGTTATACGATCC
ACTGAAGAAGCTATTTATATGGGAATATTACCTGAACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043562XLOC_043562Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069983-proteinTCONS_00069983-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069983-exon-scaffold_511-1491911889:86204..86781TCONS_00069983-exon-scaffold_511-1491911889:86204..86781Clytia hemisphaericaexon
TCONS_00069983-exon-scaffold_511-1510915933:86204..86781TCONS_00069983-exon-scaffold_511-1510915933:86204..86781Clytia hemisphaericaexon
TCONS_00069983-exon-scaffold_511-1575043694:86204..86781TCONS_00069983-exon-scaffold_511-1575043694:86204..86781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:86204..86781 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.806	11.0008	10.6499	12.2775	29.4245	29.1645	32.5355	34.6242	16.5039	17.5129	14.0462	10.511	14.0337	16.2998	16.5493	19.1	18.7833	16.5415	17.0536	13.5866	13.6406	15.1897	17.5062	19.8799	23.2488	25.226	18.9353	13.2962	12.6381	14.6497
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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