TCONS_00069981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069981
Unique NameTCONS_00069981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069981 ID=TCONS_00069981|Name=TCONS_00069981|organism=Clytia hemisphaerica|type=transcript|length=797bp
GAAGTTTCAAAGGAACAAGCTGGAAATACTACAACCTGCGCCaggaaaca
aaagaagaaaataaaccGGTTCATTCGAAATTCAAAGATTTTTACTCGAA
AATTAGTTCAAATAATAttgggaaaaattgcatttttgatACAATAAGTA
ACTGAGTGTTTAAAAATGGTCCTCAACGGTGGCAAATAAAATGATCTGCA
AAATAATTCAAAAGAGTGAAAGCTTATTGCATAAAATAAAAAGCTCCAAA
TCAAGAATGAAAAAGGAGCCAAACTGATAACATCAAAATGAGGTCATTAT
TCTTCGTCATTTAGAAGTTCTTCTTCGACAATGTAGGTCTTATATTTTCG
ATTGTTCATCGCTCGTTTCTTGCCCCATACATATTGTCCGCAACTCGACT
CATCACAATTGCTAGATAAAGCCCTTTTCACATCATCAGCAGCCAGCAGT
GCATCTAAAAGCTCATCCACACTACGCAATTCGCGTCGGTTATCTTCGAA
TTCCGGAAGAGGAGCACTGATCAGCCATTTGATAGGCATGGCGTTGATAA
ACATCGGGAGTAAAACCATACATAACAAAACGTAACTGGATAAAGTTGAA
TTCTGTgccatttttctgattttaaagttttaatctctgaaaataaaatt
acGATAAATCTAATGATAAATCGTGTGAATTAGAAGGGAATCAAGACAAA
GACTAGTTTTCAATAAATGGAATGTTACACTTTTTGTCTCATGTTGCCTG
AGGTAGAAGCATTGATTTGCCAGCTATTATATTGGCGGAAAGACCAC
Run BLAST on NCBI

protein sequence of TCONS_00069981-protein

>TCONS_00069981-protein ID=TCONS_00069981-protein|Name=TCONS_00069981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MAQNSTLSSYVLLCMVLLPMFINAMPIKWLISAPLPEFEDNRRELRSVDE
LLDALLAADDVKRALSSNCDESSCGQYVWGKKRAMNNRKYKTYIVEEELL
NDEE
Run BLAST on NCBI

transcript from alignment at scaffold_511:54040..54836

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069981 ID=TCONS_00069981|Name=TCONS_00069981|organism=Clytia hemisphaerica|type=transcript|length=797bp|location=Sequence derived from alignment at scaffold_511:54040..54836 (Clytia hemisphaerica)
GTGGTCTTTCCGCCAATATAATAGCTGGCAAATCAATGCTTCTACCTCAG
GCAACATGAGACAAAAAGTGTAACATTCCATTTATTGAAAACTAGTCTTT
GTCTTGATTCCCTTCTAATTCACACGATTTATCATTAGATTTATCgtaat
tttattttcagagattaaaactttaaaatcagaaaaatggcACAGAATTC
AACTTTATCCAGTTACGTTTTGTTATGTATGGTTTTACTCCCGATGTTTA
TCAACGCCATGCCTATCAAATGGCTGATCAGTGCTCCTCTTCCGGAATTC
GAAGATAACCGACGCGAATTGCGTAGTGTGGATGAGCTTTTAGATGCACT
GCTGGCTGCTGATGATGTGAAAAGGGCTTTATCTAGCAATTGTGATGAGT
CGAGTTGCGGACAATATGTATGGGGCAAGAAACGAGCGATGAACAATCGA
AAATATAAGACCTACATTGTCGAAGAAGAACTTCTAAATGACGAAGAATA
ATGACCTCATTTTGATGTTATCAGTTTGGCTCCTTTTTCATTCTTGATTT
GGAGCTTTTTATTTTATGCAATAAGCTTTCACTCTTTTGAATTATTTTGC
AGATCATTTTATTTGCCACCGTTGAGGACCATTTTTAAACACTCAGTTAC
TTATTGTatcaaaaatgcaatttttcccaaTATTATTTGAACTAATTTTC
GAGTAAAAATCTTTGAATTTCGAATGAACCggtttattttcttcttttgt
ttcctGGCGCAGGTTGTAGTATTTCCAGCTTGTTCCTTTGAAACTTC

Coding sequence (CDS) from alignment at scaffold_511:54040..54836

>TCONS_00069981 ID=TCONS_00069981|Name=TCONS_00069981|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_511:54040..54836 (Clytia hemisphaerica)
atggcACAGAATTCAACTTTATCCAGTTACGTTTTGTTATGTATGGTTTT
ACTCCCGATGTTTATCAACGCCATGCCTATCAAATGGCTGATCAGTGCTC
CTCTTCCGGAATTCGAAGATAACCGACGCGAATTGCGTAGTGTGGATGAG
CTTTTAGATGCACTGCTGGCTGCTGATGATGTGAAAAGGGCTTTATCTAG
CAATTGTGATGAGTCGAGTTGCGGACAATATGTATGGGGCAAGAAACGAG
CGATGAACAATCGAAAATATAAGACCTACATTGTCGAAGAAGAACTTCTA
AATGACGAAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043560XLOC_043560Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069981-proteinTCONS_00069981-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069981-exon-scaffold_511-1491911889:54040..54836TCONS_00069981-exon-scaffold_511-1491911889:54040..54836Clytia hemisphaericaexon
TCONS_00069981-exon-scaffold_511-1510915933:54040..54836TCONS_00069981-exon-scaffold_511-1510915933:54040..54836Clytia hemisphaericaexon
TCONS_00069981-exon-scaffold_511-1575043694:54040..54836TCONS_00069981-exon-scaffold_511-1575043694:54040..54836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:54040..54836 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0603363	0.176512	0.204948	0.0668364	0.0813669	0	12.1788	11.4016	18.3548	16.5634	14.8543	16.7968	29.1729	21.795	0.445392	0.772112	15.7171	17.038	120.068	168.06	41.944	39.1819	12.0374	17.7993	13.863	14.2803	70.3231	68.1637	0.267874	0.409382
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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