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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069972 ID=TCONS_00069972|Name=TCONS_00069972|organism=Clytia hemisphaerica|type=transcript|length=2147bp
CTAATACTACACATTTGGTTTTGGGTGATCATTTGAGATGGGTGGTGGTA
AGGCGGTTGGATGTTGTGGTAGTTTGATTGAGGCGGTTGGATGTTGTGGT
TGTTGGATTGAGGCAGTTGGAGGTTGTGGTTGTTGGATTGAGGCAGTTGG
AAGTTGTGGTTGTTGGATTGAGGCGGTTGGAGGTTGTGGTTTTTGGATTG
AGACAGTTGGAGGTTGTGATTGTTGGATTGAGACAGTTGAAGGTTGTGAT
TGTTGGATTGAGACGGTTGGAGGTTGTGGTTGTTGGATTGAGGCAGTTCG
ATGTTGTGGTTGACGGATTGTTGGCGCTGAGGTGGTTGGTCGTCCTGTGT
CTCCAGTTCTGGAATGTCAAAGAATGCCTCAGGGTCTTCCACAATATCGA
GATAGGTACGATTGTTACCTGCTGCCACAAACGCATCCATGTCATTGTTA
GTAGCTACTAAATTTTCCAGCCTACTTAGACGATCATTCATTTCTCGCAT
TTCTGTCCGCACAAATTTGTCCAGATTgtcaattttattaaaaagaacgc
tcaaatttttttgactaattggtgtcgaaattaaattaaaatcaatAGAA
CCTGCACTTGAAGCAATGTGTTGTGGCAATTTCTGCTCTGGTGTTTTCAA
AGAGTTAATAATATTTGAAGCTGAAGCATTGTCAGATGGCTCTTTGAGAG
ATGGAGATGGCTTCTTTATGAGAGATGGAGATTGTTTTTTTATGATAGAT
GGCATTggagatgatttttttatgacagATGACATTGGAGATGGTTTTTT
GGGTTCAGGAGATGGCTTTGGAGATGGTTTTTTTGGTTCGGGAGATGACA
TTGGAGATGGTTTTTTTGGTTCGGGAGATGACTTTGGAGATGGTTTTTTA
TGTTTGAGGGATGGTGATGGTAATGGTGATATGTTAATATGTTTTGAaga
tggtgatggtgatggCGATGGCGATGGCGATGGTTTCTTGGATTCTGGAG
ATGATGTCGATTGTGATCTTTTGGATTCTGGAGATGACGTAGGTGAATTC
TTTCTGGATTGTGATGACTGAAGTGGAGGGTATGATGGTTTGGTCCTTGg
cctttttaaaaagttcttcgCCTCTTGCTCTTCTTTGGCTTTTCCTTTtt
cgattgaaaatttctccaccAAAAACGAATTGTAGTTTTTCATCCTCTCG
TTCTGTTTGTCATTAAATTTCTGGATGACAGCTTGCTCCTCAGGGCTGAT
TTCTCGAGGCTAAaagaaaaggttttattttgtttggaaTTTCATCTGAT
AATTATAAATTAATtacttaaaagaagaaaatttggccgaaaaaaaattg
cggagTTAGCCAAAATCCACCCAATAAAGTTCccaacaaaattaattttt
tccttcGTCCGTCAAATTATAttctgccaaatttaatttattttgcgCGT
TCCCTAAATTCTTGCTTTTTCAAGCccaaaaacaggttttttttgcttat
ttaataacacTTTTGGCGTAAAATATTCAGCTATGCGCCAAATCAAATTC
CcgtccaaaatttcttcctttaaggtactaGAAAATAAAGTTCAGTCTGT
TAAAAGCCTAGTGTTTGATAGGAATGAGAAGGGAGCATTAAGGTGACTAT
TATGAACATAGaaacaaatttcttgaaattattttttcaggttTGGACAG
AGTTCCACAAATATTCATGCTGAGAAGTTCACTCAATCATTGACAGAAGC
CACATCAAATGCATCAAAATACTGCGattcaCATGAGGCATTGTATCAAA
AGAGGGTATCAGCAAAAGTTTAGCATCGTCATCGCGGTGGTTTGGTACGC
GACCCGGAAGAGGTACAGCATTTGCGAGCTCAAAGTTCTCGATAAAATTG
ACGGCCATTTCTCTTGACAAGGAGTTCCGTATAGTGTACATGGAATACTA
TCACCTGTTTTGGATTTTTGACGCACATAAACAAGTTGGTAGACGATCGA
AAATGCAAATTCAAAGTTATCGCGCCTTGGTTCCACTGGTTACAACAAAT
CACTCTCAAAGGATTGTTAAAAAGAActagaatttttatttgaaataaat
ttaactGTTGAGTTTGAAGCTCCAAGATCCGGAAAGTTCAATAATTC Run BLAST on NCBI transcript from alignment at scaffold_511:573757..576808- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069972 ID=TCONS_00069972|Name=TCONS_00069972|organism=Clytia hemisphaerica|type=transcript|length=3052bp|location=Sequence derived from alignment at scaffold_511:573757..576808- (Clytia hemisphaerica)
CTAATACTACACATTTGGTTTTGGGTGATCATTTGAGATGGGTGGTGGTA
AGGCGGTTGGATGTTGTGGTAGTTTGATTGAGGCGGTTGGATGTTGTGGT
TGTTGGATTGAGGCAGTTGGAGGTTGTGGTTGTTGGATTGAGGCAGTTGG
AAGTTGTGGTTGTTGGATTGAGGCGGTTGGAGGTTGTGGTTTTTGGATTG
AGACAGTTGGAGGTTGTGATTGTTGGATTGAGACAGTTGAAGGTTGTGAT
TGTTGGATTGAGACGGTTGGAGGTTGTGGTTGTTGGATTGAGGCAGTTCG
ATGTTGTGGTTGACGGATTGTTGGCGCTGAGGTGGTTGGTCGTCCTGTGT
CTCCAGTTCTGGAATGTCAAAGAATGCCTCAGGGTCTTCCACAATATCGA
GATAGGTACGATTGTTACCTGCTGCCACAAACGCATCCATGTCATTGTTA
GTAGCTACTAAATTTTCCAGCCTACTTAGACGATCATTCATTTCTCGCAT
TTCTGTCCGCACAAATTTGTCCAGATTGTCAATTTTATTAAAAAGAACGC
TCAAATTTTTTTGACTAATTGGTGTCGAAATTAAATTAAAATCAATAGAA
CCTGCACTTGAAGCAATGTGTTGTGGCAATTTCTGCTCTGGTGTTTTCAA
AGAGTTAATAATATTTGAAGCTGAAGCATTGTCAGATGGCTCTTTGAGAG
ATGGAGATGGCTTCTTTATGAGAGATGGAGATTGTTTTTTTATGATAGAT
GGCATTGGAGATGATTTTTTTATGACAGATGACATTGGAGATGGTTTTTT
GGGTTCAGGAGATGGCTTTGGAGATGGTTTTTTTGGTTCGGGAGATGACA
TTGGAGATGGTTTTTTTGGTTCGGGAGATGACTTTGGAGATGGTTTTTTA
TGTTTGAGGGATGGTGATGGTAATGGTGATATGTTAATATGTTTTGAAGA
TGGTGATGGTGATGGCGATGGCGATGGCGATGGTTTCTTGGATTCTGGAG
ATGATGTCGATTGTGATCTTTTGGATTCTGGAGATGACGTAGGTGAATTC
TTTCTGGATTGTGATGACTGAAGTGGAGGGTATGATGGTTTGGTCCTTGG
CCTTTTTAAAAAGTTCTTCGCCTCTTGCTCTTCTTTGGCTTTTCCTTTTT
CGATTGAAAATTTCTCCACCAAAAACGAATTGTAGTTTTTCATCCTCTCG
TTCTGTTTGTCATTAAATTTCTGGATGACAGCTTGCTCCTCAGGGCTGAT
TTCTCGAGGCTAAAAGAAAAGGTTTTATTTTGTTTGGAATTTCATCTGAT
AATTATAAATTAATTACTTAAAAGAAGAAAATTTGGCCGAAAAAAAATTG
CGGAGTTAGCCAAAATCCACCCAATAAAGTTCCCAACAAAATTAATTTTT
TCCTTCGTCCGTCAAATTATATTCTGCCAAATTTAATTTATTTTGCGCGT
TCCCTAAATTCTTGCTTTTTCAAGCCCAAAAACAGGTTTTTTTTGCTTAT
TTAATAACACTTTTGGCGTAAAATATTCAGCTATGCGCCAAATCAAATTC
CCGTCCAAAATTTCTTCCTTTAAGGTACTAGAAAATAAAGTTCAGTCTGT
TAAAAGCCTAGTGTTTGATAGGAATGAGAAGGGAGCATTAAGGTGACTAT
TATGAACATAGAAACAAATTTCTTGAAATTATTTTTTCAGGTTTGGACAG
AGTTCCACAAATATTCATGCTGAGAAGTTCACTCAATCATTGACAGAAGC
CACATCAAATGCATCAAAATACTGCGGTTATTACTTCCTCTGGTCCACTT
TTGTCATTAATCCAATCCTTTGCTTTGGCTGAGCGTTGTTTTTGAGCAGG
CGTTTGCTTTGATAGCTTTTTTGCTTTCGGCTTGGTTTCTTGCTTTTTCG
GCTTGGGTTCTTGCTTTTTGCATTTTGTCGTCTTGGCTTCCTGTATAGTA
AAAACATTGTAACTAATATAAAGTACACGCTGAGACAAGGAAGTATTTTT
AGGAAGTCTTCACAATGAAAAAAGACTACACCACGTGGTAAGCTCTTCAA
ACTGACCAAAAATTGTATTGGATAAAACAGGGGAGGGGTACAGAGGCAGG
GTACTAACCCATAGGTACTAACTTGATTTTTTACTAAAATTTTGATTAGC
ACCACCCACCCATATTTAGTACCAGGTACTACTTCATTTTTGCTGTTAAA
ATATGGACACCACTCTTAAAATCTTAAATTTTACCGATTAGATTGTTAGT
TTTTCAGACTGAAAATTGACAGATAATTCAAGCAAACTATCAATGATGGA
GTCAGAAGCTTTTNGACAGCTTGCTCCTCAGGGCTGATTTCTCGAGGCTA
AAAGAAAAGGTTTTATTTTGTTTGGAATTTCATCTGATAATTATAAATTA
ATTACTTAAAAGAAGAAAATTTGGCCGAAAAAAAATTGCGGAGTTAGCCA
AAATCCACCCAATAAAGTTCCCAACAAAATTAATTTTTTCCTTCGTCCGT
CAAATTATATTCTGCCAAATTTAATTTATTTTGCGCGTTCCCTAAATTCT
TGCTTTTTCAAGCCCNATAATAATTTAAAGGATATAAGATTGTTTTGAAT
TTTGAACATGACATAAGAAGTTTTAGGGCCCTTGTCATGGCCTACTAACG
CAGTTAATGATTTAAAAAAATTATGTTTTAGATTCACATGAGGCATTGTA
TCAAAAGAGGGTATCAGCAAAAGTTTAGCATCGTCATCGCGGTGGTTTGG
TACGCGACCCGGAAGAGGTACAGCATTTGCGAGCTCAAAGTTCTCGATAA
AATTGACGGCCATTTCTCTTGACAAGGAGTTCCGTATAGTGTACATGGAA
TACTATCACCTGTTTTGGATTTTTGACGCACATAAACAAGTTGGTAGACG
ATCGAAAATGCAAATTCAAAGTTATCGCGCCTTGGTTCCACTGGTTACAA
CAAATCACTCTCAAAGGATTGTTAAAAAGAACTAGAATTTTTATTTGAAA
TAAATTTAACTGTTGAGTTTGAAGCTCCAAGATCCGGAAAGTTCAATAAT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069972-exon-scaffold_511-1575043694:575033..576808 | TCONS_00069972-exon-scaffold_511-1575043694:575033..576808 | Clytia hemisphaerica | exon |
| TCONS_00069972-exon-scaffold_511-1575043694:573757..574127 | TCONS_00069972-exon-scaffold_511-1575043694:573757..574127 | Clytia hemisphaerica | exon |
| TCONS_00069972-exon-scaffold_511-1510915933:575033..576808 | TCONS_00069972-exon-scaffold_511-1510915933:575033..576808 | Clytia hemisphaerica | exon |
| TCONS_00069972-exon-scaffold_511-1510915933:573757..574127 | TCONS_00069972-exon-scaffold_511-1510915933:573757..574127 | Clytia hemisphaerica | exon |
| TCONS_00069972-exon-scaffold_511-1491911889:575033..576808 | TCONS_00069972-exon-scaffold_511-1491911889:575033..576808 | Clytia hemisphaerica | exon |
| TCONS_00069972-exon-scaffold_511-1491911889:573757..574127 | TCONS_00069972-exon-scaffold_511-1491911889:573757..574127 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:573757..576808 - |
Blast
The following BLAST results are available for this feature:
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