TCONS_00069969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069969
Unique NameTCONS_00069969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069969 ID=TCONS_00069969|Name=TCONS_00069969|organism=Clytia hemisphaerica|type=transcript|length=648bp
TAACAATCAGAGATTCATAGAATTTTATCGtagtgaATTGGAATACCCGG
ATCAGCGTTCCATCATTCAGGTACCTGGAGATGGTCATTGTCTTTTGTAT
AGCTGGGTAATCGCCCTTCGTGCATCAGAGAAGTCAGGTATCAGACCGAG
TTACGAGGAACTAAAGGCAATGTTGAGGCAAAGCTTTGCATCATACTATG
GAGAAGAACATCGAGAATTCATGTGTGACCAAGAGGAAAACGTAAACCTT
CAAGACGAACTTAGTGAATTCATCGATCGAAAAAACTATGGCCGTCAAGT
TGGTGATGAGATGATAATCAATGTATTGGCGACCATTACTAAAGTTCGAG
TTGGCGTTTGGCAACGATAATTAGACAATTCCTTTTCTTTAATTGTATAT
CGAGAGCCACTCAAGAATGTTGCTCCATTAAATGGCAAAATTCACCTTCA
TAAGATGGGCCAACACTACGAACCCATCGTTGACATTAAATTTAAAGAAA
CTTCACAGAGACTCTCAAGAACACATGGCCTGTCTTTACAAGAGCTCCAG
CTTCTTCGTGAGCAACAAGCACAAGTATGGTTGGAGAAACATTCGATCTC
TTCGGGACAGTTTCCTTCAAATGTTTCAACAGAttcacaaaagaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_511:514384..517652-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069969 ID=TCONS_00069969|Name=TCONS_00069969|organism=Clytia hemisphaerica|type=transcript|length=3269bp|location=Sequence derived from alignment at scaffold_511:514384..517652- (Clytia hemisphaerica)
TAACAATCAGAGATTCATAGAATTTTATCGGTATATTATAATTATCTCTA
CCTCTCTTTCCTATCAAAATCAAGATAGTAAGGGCCTATTTGTTTCATCA
CTATTTCTGCTACATTTACTGTAAGTGCTCTCATTTCAATTTGTTCTGTC
CAAATCTGTTGCACTTCTTGTAAATAAACTTGCAAACTCCCTATTAGCAA
AAATAGTAAAAACTTCAACCTTCTGCAAGCAAAGCAAAATCGCAATTTCT
TCACAGTAAAAATTGCATCTAAAATCAGACTGGATGATGTTTTCTTAGCC
TGATTGCCGATTTTGAACCAATTAAATTAAAGAAGTGAAGAGCTGAAACT
GTAGCTTGCTCCACGCACAGGTCTATATCAAAATAGAAGTTACTTTCATA
ATGGCGGGATAGTGGCCACACAGCTGAGAATAAACAATGGATCCAAAGTT
ACTTTTTAAAATTCAAAGCACAAAACAAAAGAAAGTCCGAAAAGATTCAT
TCTGACATCAAAAATCTTGAAGTAACAGACGAAGTGATCGCAAGTAAAAT
ATGCTATATTTCGTATTCTATCTAATACATCATTCAGGCAAAAAGTAAGT
ACAAAGAATAAAAGCTTCTACCGGGTGCGCCACAAAAAAGTTTCTCTCTT
TAAAAGTAATTTTCTTGAAATCTAAACATTTTAAAAGAACCATTCCTATT
TTATTGGAAAGAAGAAGAATAAACTTAAATTTTGATGGGTCATTTATTGA
ATTCGATTCATTATATCAAAAGTTATGCTCAATTGAATAAAAAAGTTACT
TTTGGAAAGTGCTCAAAAACGTTAAAAATCGACCTATCAAATTATTCAGA
AGCATAATTACATGATATATCAGTATTTTTGTTTCAGTCATTAAAAATGA
TAATTAGCTGTCTTAATGACCTTTTGTTATTAAAGGAAGGTTGAATTTAA
ATGGAAGGAAGAAAATTCGTCGAAATAGGCCAAATAATCTGGTAGAATTC
AGAAAAATACATCAAATATGGGTTTCGAGGTAGATTCAGCCTTACATAGA
CTTAATCCAGTCTAGAACCAAAAATCTGAGGAAAATTTCGGTAAAACTAA
ATCAAATTAATCTTGATGAAGATTTTGAACCCTTTCGACCCTTCAGTTTC
AAAATTTCTGTGTTTAGTTAATGAAAAATGCTCTTAATCATGTAAAGGCT
ATTGCGAATGCCAAATTTAAAGTAAAAATTTGATAGGTCGATTTTTAACG
TTTTCGAGCACTTTCTGAAAGTAACATTTATATTCAATTGGACATAACTT
TTGATCTAATGAATCGAATTTAATAAATGACCCATCAAAATTTAAGTCTA
TCTTTCTTCTTTCCAATGAAATAGGAATGGTTCTTTTAAAATCTTTAGAT
TTCGAGAAAATTAGTTTCAAAGAGAGAAACTTTTTTGTGGCGCACCCGGT
ATTTATATAAAAGTTCAAGATTTTTGATGTTAGAATGAAGCTTTTCGGAC
TTTCTTTTGTTTTATGGTTTTTAAAATGATCGGCTGGTTATGGATTCTGA
ACCAGGGATTATCAAGATGGCAGACAACAAAAGTTGCAATATTTGCTAGC
ATTTTCAAAGTTTTCACGGACTTCATAGCACTTTTAGCAGATAGCATCTA
CAGCATTTAAAGTAAGTGAAACAAATAGGCCTTAAATATCTCATGTATTA
AGGATTGTTCATGCTCTGCCTCAGAGCCAGAGCTTTCTTGTGTATAACGT
ATACCAAACCAAGTTGCGGACCCCAGTAGACTATTGAAAAGTAGACTAGT
AAACCACCTCTGCGATTACAATGCACGCTCACGCTATTGCAGGCAACTAC
GTTAGCTTAAATGTTTTTCCAACCACTCCCGCCATGTATTTTATTTTTTT
ATAAGAATATTTCCTGTCCGTGCGCTTGACTTTATAAGCACGATTCTCGC
GTTTTACGAAAAACTGTTAAAGGGAAAAACTATAGCAAGGTTGTTAAAGG
TATGCATGTTATTTGACAGACAATTTTGGAACTTTTTTTCTGAGTAAGTA
ACGTGGAAATGGCTGATAGTTTTAGTCTGTTCAATATCTTTAACTATAGC
TCTTCTGAATGGTATACAACTATTTTTGCTAAAAATTATTTTAGTGAATT
GGAATACCCGGATCAGCGTTCCATCATTCAGGTACCTGGAGATGGTCATT
GTCTTTTGTATAGCTGGGTAATCGCCCTTCGTGCATCAGAGAAGTCAGGT
ATCAGACCGAGTTACGAGGAACTAAAGGCAATGTTGAGGCAAAGCTTTGC
ATCATACTATGGAGAAGAACATCGAGAATTCATGTGTGACCAAGAGGTAC
GTTATTAACAGTATATAATAAATAAAAACTAATAGCTGTTAGGCGTAAAA
TCTTTTGTCAATTTGTCAATCAACACCAGTCTTGTTACTTAGTTCCTTAA
GATATAATTAGCGTGAAATTATTAATCTTAAGCTGACTTCACAAATTGTT
TCATATAGGAAAACGTAAACCTTCAAGACGAACTTAGTGAATTCATCGAT
CGAAAAAACTATGGCCGTCAAGTTGGTGATGAGATGATAATCAATGTATT
GGCGACCATTACTAAAGTTCGAGTTGGCGTTTGGCAACGATAATTAGACA
ATTCCTTTTCTTTAATTGTATATCGAGAGCCACTCAAGAATGTTGCTCCA
TTAAATGGCAAAATTCACCTTCATAAGATGGGCCAACACTACGAACCCAT
CGTTGACATTAAATTTAAAGGTAACGGAATATTTTTTTCTTCATATCTTT
AAACAGTGTGTGCCTATTTTACATACTTCCTTCGACCCGCCTTTAATGGA
TTTTTCCTAAAGCTTTTATATTCGATGCATGGTGCTGCGACATTTGGTAT
GTGTAATTTTTATTCAGAAACTTCACAGAGACTCTCAAGAACACATGGCC
TGTCTTTACAAGAGCTCCAGCTTCTTCGTGAGCAACAAGCACAAGTATGG
TTGGAGAAACATTCGATCTCTTCGGGACAGTGTAAGATTAACATATCTTG
AAATGCTACCAAATAAAGTTCTGCGCATCTAAAAATTTAAGACTTACTTT
GTATTCTTTATACCTGAATTAGCTTAAGATTTAGGATCTCAAGATCTCAA
GAATGAATTAATAGATTTCAGCCAAAATCTACATGAAACAAAAATTGATA
TTATGTTAACATCGTGATATATTCTTTCTTAGTTCCTTCAAATGTTTCAA
CAGATTCACAAAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043552XLOC_043552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069969-exon-scaffold_511-1575043694:517623..517652TCONS_00069969-exon-scaffold_511-1575043694:517623..517652Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1575043694:515307..515511TCONS_00069969-exon-scaffold_511-1575043694:515307..515511Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1575043694:514883..515144TCONS_00069969-exon-scaffold_511-1575043694:514883..515144Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1575043694:514622..514735TCONS_00069969-exon-scaffold_511-1575043694:514622..514735Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1575043694:514384..514420TCONS_00069969-exon-scaffold_511-1575043694:514384..514420Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1510915933:517623..517652TCONS_00069969-exon-scaffold_511-1510915933:517623..517652Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1510915933:515307..515511TCONS_00069969-exon-scaffold_511-1510915933:515307..515511Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1510915933:514883..515144TCONS_00069969-exon-scaffold_511-1510915933:514883..515144Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1510915933:514622..514735TCONS_00069969-exon-scaffold_511-1510915933:514622..514735Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1510915933:514384..514420TCONS_00069969-exon-scaffold_511-1510915933:514384..514420Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1491911889:517623..517652TCONS_00069969-exon-scaffold_511-1491911889:517623..517652Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1491911889:515307..515511TCONS_00069969-exon-scaffold_511-1491911889:515307..515511Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1491911889:514883..515144TCONS_00069969-exon-scaffold_511-1491911889:514883..515144Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1491911889:514622..514735TCONS_00069969-exon-scaffold_511-1491911889:514622..514735Clytia hemisphaericaexon
TCONS_00069969-exon-scaffold_511-1491911889:514384..514420TCONS_00069969-exon-scaffold_511-1491911889:514384..514420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:514384..517652 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0325172	0.0317094	0	0	0.229252	0	0	0.360015	0.231705	0	0	0	0.0111311	0	0	0.0396302	0.0125643	0.522477	0	0	0.0709701	0.389015	0	0	0	0.232313	0	0	0.00928828	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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