TCONS_00069966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069966
Unique NameTCONS_00069966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1093

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069966 ID=TCONS_00069966|Name=TCONS_00069966|organism=Clytia hemisphaerica|type=transcript|length=1093bp
AAAAATTTCAGGAGTTATTTTCCAACGAGCAATTGATTGGATTGTATTCT
TCAGCCAAGCATTGGCGTCTTATGGTCATTTACCCAAAACAACGCGAGGT
ATTATTGGTAGATCCTTTTGGTGAAACTAGATCCACATTAAGGCAAACAA
AACAACTTTGGGAGGCAAGCATGACAAGACATTTCGAAGGTGTACAAACG
TGGCAAATAAATTCAACCCAACACCCGAAACAAACTGATATGATATCATG
TGGCGCGTTTTGCTTAAAGTTTGCAGAGTGTATCTTGAAGGGGGAAGATC
TTCCAGCCAACATTTCATCATGTGACATGAATGATTTTCGCCGCGAAATT
GCTATCAACCTCATACAAATAGGCGGTGACGGTGATTGGTGCAGAAATAT
ATGCCGCTTATGTGATCGAACCTCACCACCACCATCAAAACGTGCAGGAA
CGAACCCGAAGGAATGGGGATGGGTATGTTGTGACAAATGTGAGCCAGAA
ATGTGGTACCATGGGGTTTGTCTTGGAATAAGAAGGAGCACCGAGCACCT
GAAAAACGTCTCCTTTTATTGCAACAAACCGGTGGTCCAAGATGAAATCC
TTGCTTTGGAAGTTGGCGAGACGTTGATCCGTCAacgaaaaaacagaaaa
atttccaaatgcTACGGGTGTAGTGTACCAATCAAAAACGCGCCATTGGA
AGCGCCATACGACATGGTACTTGTACAGAAGATGCTGGGTCCGAGAAAGG
GTGGTAAGATCACAGACGACCCCAGCACTTTTGTCAACTACGTCTGCAAT
TACCACCCGGATAGAAAATGCACAACAAAAATCAATATCGTTAATGATAA
GATAAAGATCTCCAAAGACTTCAAAACCATCGAAGTCAGTCATCAAGAAA
AACTGGAGGATCTAGGTATTGACATTAGTGTGTTGAATTGATGATTTGTT
TGTGGTTACATGgtttctgcccccccccccccccttcttaaaataagggg
actcaaaaaatgcctttttaaaaTGGGGGGCTTTCTATCTTGGGTCTTCT
AATATCCCTTATTAAGAGAGGATTCATTCATATCATTCAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_511:504588..509852-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069966 ID=TCONS_00069966|Name=TCONS_00069966|organism=Clytia hemisphaerica|type=transcript|length=5265bp|location=Sequence derived from alignment at scaffold_511:504588..509852- (Clytia hemisphaerica)
AAAAATTTCAGGAGTTATTTTCCAACGAGCAATTGATTGGATTGTATTCT
TCAGCCAAGCATTGGCGTCTTATGGTGAGCAATTATATTAACCGTTTAAA
AATTAACGTTATGCATAAAAATCATGTGTAAAACTTCTTTTACAAAATCG
GTAATATTTGTTATTTATAAGTGTTATGAGCAGACTTTGAATTGTTTTTG
AATGAGGGGCAGCAGTGGTTCTAAGATTTCCTGGAAATTCCTAGGCTCGG
ATTGTTAATTTGTTCTTGATTTTATCCAAAGTTCAGTCTCGTATTCTTAT
AAAGATATTCTTATAATTAATTATATACTTCATCTCCACTGACTCTAAGG
CTACTCAGCTAGTATGCACTGAATAGAAAGGGTGGAAATTAGGATCCATT
AATTATTATGATTCATTACCTTAGATCAGAGGATGTTCTTTAAATTTAGG
TCATTTACCCAAAACAACGCGAGGTATTATTGGTAGATCCTTTTGGTGAA
ACTAGATCCACATTAAGGCAAACAAAACAACTTTGGGAGTAAGTAAAGCT
TGGTCCTCACTTGTTGAAAAAATCGCGTCTAATCACTAGACGCCCGCGTC
GAGTCCTTAAAGCTTGGTCCTCACTTATTGAAAAAATCGCGTCTAATCAC
TAGACGCCCGCGTCTAACATTAGACGCGCGCGTCGAGTCCTTAGGCGCGT
GCGTCTAGAAATTATGTCTTTGTTGTCCTCACTACCATGATTTTTTCAAC
AAATGAGGACCAAGCTTAAAAGCTTTGCTGTATAAGTATATTGTGTTTTG
TCACGCTGTTAAAGATTCCATCTGACCACTAGGCTACTTTCAGCAGTTTC
GATTGTCTTTTATGAATAAGAAGACTTTCTTGTAGCCTTGTAGTACTTGA
CATAGTGTGCATCCCTACTTCGTACTCTTTCTTAATAATTTTGGTAGGTG
GTTAAGCGAGTTTCCTTCGAAACGGATTTTCTTCGAAACGAATTTCCTTA
AAAAAAGGAGGATAACATTTCATTACAGAAGGGGAATGGGTATATAGGGG
GATGAAATAAACCTAGGAGGCTCATACCCTCTGCAAACTTTGACTGAATC
TTTTCTACCTTTTTAGGGCAAGCATGACAAGACATTTCGAAGGTGTACAA
ACGTGGCAAATAAATTCAACCCAACACCCGAAACAAACTGATATGATATC
ATGTGGCGCGTTTTGCTTAAAGGTAAGGTTTTCCTTGTGCTGGAACTAAT
AAAATTCACTACTTCGACATCAGATGTTCTGACAGGTGTCCTTGAATTCA
AACTTACTCTCAGGTCTCTAATAGTTAGGTATTTTAGCATGTTTTCTCTG
CATCCAAAATAGTTATGCTTTGTTTACTGCTTTTTTTAAATACGTTTCAT
TATGTTTTAATAGTTTGCAGAGTGTATCTTGAAGGGGGAAGATCTTCCAG
CCAACATTTCATCATGTGACATGAATGATTTTCGCCGCGAAATTGCTATC
AACCTCATACAAATAGGCGGTAAGCAAAATTTTTGTTGCTGTAGGAGAGA
ATTTTGAAATGCAAGTGAGAGATAGCATCCTCCCTGGTAGATCTTTTAAA
TAGTGATTATTATCCACAAAACGCGACTATTACAATATATTTAGATTATC
CAAACTCCGCTCTTTTTTATGTTCAAATATTGACTGCGTTGCAATACACT
GGGGGATCAGTGTACAATGGTGGATATTTCAGAATTTTTTTGCTGTGTAT
TCGTTGTACCTTAAAGGAAGAAATTTTGGCGGGAATTTAATTTGGCGGAT
GGCTGGAAAAATTAAATTTGAAGGGAATTTAATTTGGCGGTTGCAGGGTA
TTTTTGGCCAAAATCGTTATCAAATAAACAAAAAAACCTGTTTTAAGGCT
TGAAATAGCACCAATTTGGGGAATGCGTTAAATAAAATAAATTTGACAGA
AATTTAATTTGGCGGATGGAGGAAAGAATAAATTTTTGGCGGGAAATCGA
TTTGGCTGATTTTGGTTAAATTTTCTTTCCGCAAAAATTTGTTCCTTTAA
GGTAGTGGTAGTCACGTCAAAATCTGTTTTGACGTAAAAAATTGAAAAAA
GCTTTCATGTATTCATGTATTCTGTATCTGTAAAAATTGGATGAATTTTA
AGCTTTTCAGTGGAAATTTTTAAGGAGTAAGTATATTTGGAAGCTTGTTG
GCTAGTACTTGTATTACAGTCAACACAACGCAACAGTCTCGAACACCCGC
TATCTCGAACTTTAACTATCAAACTTTTTCCTCTGTGCCTTGAGGCACAT
TCTAGGCTAATTAATTAATATAATTTTTTTAGTGTATTTAAAGTCAGAAG
GTTGGGGTTATTTTTAAACAGCTATTGTGTCGCTGTAGATTGTTTTATTT
AATGTTCACACATGATTCAATAACAGGTGACGGTGATTGGTGCAGAAATA
TATGCCGCTTATGTGATCGAACCTCACCACCACCATCAAAACGTGCAGGA
ACGAACCCGAAGGAATGGGGATGGGTAATTATTAATTTAGAAAGTTAGGA
AGACATTCACGCTCGGGTGCCTAACCGGACCTGTTTATATTAATTTTTGA
AAAAAAATCCCACTTGCGGAAATGAAAGAAATTTTTTCTCTAAACAGCCT
ATTTTTACCATATGTTTGGGTCTTCAGGAGTATATTTTCTAACTCCCATT
AGTATATTTTTTCAGAGACACATCGATTTTAGATTCGTATTTATCTCGAC
TTCTATCCGGCTAGTAGGTTAGATATGAATCGATTAGACAAGTTTGAGTA
CAATTTACTAGTTCTCTTCTTAAATGTGAAAATGTTTACCGGTCCTTTAA
ATGTTATTTTCAACAAATTTAACGACATTTTCATTTCGATACTTTTCTTT
GATAGGTATGTTGTGACAAATGTGAGCCAGAAATGTGGTACCATGGGGTT
TGTCTTGGAATAAGAAGGAGCACCGAGCACCTGAAAAACGTCTCCTTTTA
TTGCAACAAAGTAAGTACTCGGTACAACCAAAATATTCGTCTCTTTCAAC
TGATGAAAATCTATACCACGAGGTGAACTATTATGCTAAACTCTGTTCAC
GATAAGTGTGAAAAAAGAACAAAAAAAACAACTTGGGGCCAATCAGCTGT
AAACTTTGTTTGATATTTTCTTATTGATTGAATACTTTCAGTAACGACGT
TCTAAGATCAAAGTTTCATTCCTGTGAAAATGATAGTTATAACTCTATAA
GTTTTTCGAAAATTAAAAAATAAACTTATTTATTCCACTCATCAACATCT
TTCCAACGGTACCAAAGGTTATAGACAAAACAAAAAAAAACTGCACACTT
ATCGTGAACAGACTTCTCGGGTAAATTAATGCGTGTCCAAATTTTCGTTA
ATTCTTCGGACCCATCATCACCCCTCCTAGCATAATAAATTATACCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATGCGCTTCTTTAAA
GGTATAATTTATTATGCTAGGAGGGGTGACGATGGGTCCGAAGAATTAAC
GAAAATTTGGACACGCATTAATTTACCCGAGTTTAGACTTTGGCCTCTAC
CCTTTTTCGAAAAATGTTTCTACCCCTGGTCAAAAGGACCTTTCATTATG
GTCTACACTATAGATAGGGAACAAAATTTTCAAGGAATCAAACATTTTAT
CAAGGCTAGAAAAAATATTTTATGATTTTTGATGAGTCAGCTGTTACTTT
CAGAATCTTTGGCCGGGCCATAGCTTTCATTAGCGAGTTTATGTATGTGT
GTTTTTCAGCGACGGAGACGGTAAGGTTCTAATTTGAGTAGATCCTGACC
AGCTGAAGACGACGGTAAATCAGCAGTTTTACCGTCCTCGATTTTGCGGG
GCAGAATTGCGGGTTTTTCCAAATCGCATCAGTCACTCTACCGTCCTTAA
AAGTGCAAATACATAAACTCGGTAATAAGAGACAATGCCTCGAAGTCAAT
TTGTTATAGAATGGAGTGAAATCAATGAAACTTAACTTACTGCGAAAGTT
TCTTCCCCTAAAGTATTTAGAAAGGTTTAGAACTTAGCCTTAAAATAAGC
AATATATGACATTTCCTTGGATTGTATTGCTCTTTGTGTAATAAAAGACA
TAAGAAGACAAAAATTCCATCAGATTAAAACTTGCCTTTTTCTTTATCTC
TCTTATCAAGTGTTCCTTTAATTGAATTTCATATTTTTCTAATTGTTCAG
CCGGTGGTCCAAGATGAAATCCTTGCTTTGGAAGTTGGCGAGACGTTGAT
CCGTCAACGAAAAAACAGAAAAATTTCCAAATGCTACGGGTGTAGTGTAC
CAATCAAAAACGCGCCATTGGAAGCGCCATACGACATGGTACTTGTACAG
AAGATGCTGGGTCCGAGAAAGGGTGGTAAGATCACAGACGACCCCAGCAC
TTTTGTCAACTACGTCTGCAATTACCACCCGGATAGAAAATGCACAACAA
AAATCAATATCGTTAATGATAAGATAAAGATCTCCAAAGACTTCAAAACC
ATCGAAGTCAGTCATCAAGAAAAACTGGAGGATCTAGGTATTGACATTAG
TGTGTTGAATTGATGATTTGTTTGTGGTTACATGGTTTCTGCCCCCCCCC
CCCCCCTTCTTAAAATAAGGGGACTCAAAAAATGCCTTTTTAAAATGGGG
GGCTTTCTATCTTGGGTCTTCTAATATCCCTTATTAAGAGAGGATTCATT
CATATCATTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043551XLOC_043551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069966-exon-scaffold_511-1575043694:509779..509852TCONS_00069966-exon-scaffold_511-1575043694:509779..509852Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1575043694:509315..509403TCONS_00069966-exon-scaffold_511-1575043694:509315..509403Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1575043694:508631..508736TCONS_00069966-exon-scaffold_511-1575043694:508631..508736Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1575043694:508334..508439TCONS_00069966-exon-scaffold_511-1575043694:508334..508439Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1575043694:507329..507426TCONS_00069966-exon-scaffold_511-1575043694:507329..507426Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1575043694:506843..506947TCONS_00069966-exon-scaffold_511-1575043694:506843..506947Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1575043694:504588..505102TCONS_00069966-exon-scaffold_511-1575043694:504588..505102Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1510915933:509779..509852TCONS_00069966-exon-scaffold_511-1510915933:509779..509852Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1510915933:509315..509403TCONS_00069966-exon-scaffold_511-1510915933:509315..509403Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1510915933:508631..508736TCONS_00069966-exon-scaffold_511-1510915933:508631..508736Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1510915933:508334..508439TCONS_00069966-exon-scaffold_511-1510915933:508334..508439Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1510915933:507329..507426TCONS_00069966-exon-scaffold_511-1510915933:507329..507426Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1510915933:506843..506947TCONS_00069966-exon-scaffold_511-1510915933:506843..506947Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1510915933:504588..505102TCONS_00069966-exon-scaffold_511-1510915933:504588..505102Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1491911889:509779..509852TCONS_00069966-exon-scaffold_511-1491911889:509779..509852Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1491911889:509315..509403TCONS_00069966-exon-scaffold_511-1491911889:509315..509403Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1491911889:508631..508736TCONS_00069966-exon-scaffold_511-1491911889:508631..508736Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1491911889:508334..508439TCONS_00069966-exon-scaffold_511-1491911889:508334..508439Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1491911889:507329..507426TCONS_00069966-exon-scaffold_511-1491911889:507329..507426Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1491911889:506843..506947TCONS_00069966-exon-scaffold_511-1491911889:506843..506947Clytia hemisphaericaexon
TCONS_00069966-exon-scaffold_511-1491911889:504588..505102TCONS_00069966-exon-scaffold_511-1491911889:504588..505102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:504588..509852 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.260208	0.346853	0.209978	0	0.350906	0.474916	0.663685	0.57966	0.946945	0.166191	0.294454	0.436913	0.492478	0.664353	1.23434	1.3105	0.951611	0.645788	1.33731	0.868267	0.798883	0.311362	0.0682701	0.161597	0	0	0.734456	1.284	1.52688	0.331919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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