TCONS_00069950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069950
Unique NameTCONS_00069950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069950 ID=TCONS_00069950|Name=TCONS_00069950|organism=Clytia hemisphaerica|type=transcript|length=816bp
GAAATCGATACCATGAGGTGAACGAAAAATGATACATTATAATATAAAAC
TGAAGGCGCCTTTACAACAACACTTACGCAGTTACATTAGCAAGACTTAA
CTTTACTTTATGATAGTTCTTCAAAAGATTAGACAGAAAAAAACATTGCT
CATTTCTATTGGATGAAAGGAGGTGATGTATTTTGATGAAGACGAAGATG
AGGAAGTTCAAGAGCTCTTCTTAGGTTCATATGAAGGGACACGAAATGAT
CGTGAAGAAAGACATGGTCGAGGGAAGGCTATTTTGCCGAACGGGGATGT
TTATGAAGGAGAGTATGAAAATGGAAAGAGACATGGTTATGGTGTTTACA
CGTTTGTTTCTGGTGCAAAGTATTTAGGTCACTATGTGCATGGTCGAAAA
GATGGAAGTGGAAAACTTCACAATGAAGATGGATCCTTTTATGATGGAAA
TTGGACAAATGGTATGAAGTGTGGAAAGGGTGTCAATTGTTACAGTAATG
GAGATCGTTATCAAGGAGATTGGTTTCATAACAAAAGACACGGGCATGGA
AAATATGAGTTTAAAAAGACAGGGAGCGTATACGATGGGCGCTGGGTGGA
TGGTCATTGGCATGGAATAGGTGAACTTATTCACCAAAATCATCGATACG
TCGGAACCTTTGATCAAGGTCTCCCTACTGGTAAAGGAAAGTATATTTTC
AACAGTGGTATCGCTCAACAtggatattttgaaatattgaaaaaaccTCG
TATAgatgtcatcaaaaatttgaatattgaaaacaaaactgacgAAGGAA
ACTGGGAACGACAAGC
Run BLAST on NCBI

protein sequence of TCONS_00069950-protein

>TCONS_00069950-protein ID=TCONS_00069950-protein|Name=TCONS_00069950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MYFDEDEDEEVQELFLGSYEGTRNDREERHGRGKAILPNGDVYEGEYENG
KRHGYGVYTFVSGAKYLGHYVHGRKDGSGKLHNEDGSFYDGNWTNGMKCG
KGVNCYSNGDRYQGDWFHNKRHGHGKYEFKKTGSVYDGRWVDGHWHGIGE
LIHQNHRYVGTFDQGLPTGKGKYIFNSGIAQHGYFEILKKPRIDVIKNLN
IENKTDEGNWERQ
Run BLAST on NCBI

transcript from alignment at scaffold_511:80935..84290-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069950 ID=TCONS_00069950|Name=TCONS_00069950|organism=Clytia hemisphaerica|type=transcript|length=3356bp|location=Sequence derived from alignment at scaffold_511:80935..84290- (Clytia hemisphaerica)
GAAATCGATACCATGAGGTGAACGAAAAATGATACATTATAATATAAAAC
TGAAGGCGCCTTTACAACAACACTTACGCAGTTACATTAGCAAGACTTAA
CTTTACTTTATGATAGTTCTTCAAAAGATTAGACAGAAAAAAACATTGCT
CATTTCTATTGGATGAAAGGTAAGACACCCGGGGGGGGGGCAGCCAAGCA
AAATGACTGACGGGTATGTGCGGGCACTAAGGGTGTGTTTTTCAAGGCAT
CCGAAATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCC
CCGGGGTAAGACAGAAGAAACCGATAGAGAAATAATATATACTGAAGTTA
AGATGGAAACAAACTGTGACTGGCGAAAAATTTTGAAACCTTTGAAATAA
AGCAAAACATGATCTACAAACAAATAAGCCTATTGGATAATAAAATCACC
GTATTAGTAAAAGAGGCTCAAAACCTGTGAGCAGAGCTGTCGGAAATGGA
ACGGGTAAGGACTCTACCAGATTGTACCAATTAAACTTCGCCATCATTAG
TAGAATTGGCAGAATCAAACTATCATTCTTCCATTTCATTTCCATTAGGA
GGTGATGTATTTTGATGAAGACGAAGATGAGGAAGTTCAAGAGCTCTTCT
TAGGTAAATTAAAGAAGTATTAAGATTAGTTTTGTGTATATATACGGGAA
TATCCCAACTCGAGTCCAGTTCCTTTTTTTATGATTATGATATTGTTCAC
AATTGGTCAGTAAAATCATAATGTGGTACAAGTGGCTCTAGGTACAGCAT
TTGACATAGGTACATGATTTGAAGCATAAATCATGTTTAGAAAGAACACG
AGAGAATTGTCAACTATCATCGTCCAAAAGAAAAACTACAATTATTTCTA
TTTTCTTTGTTGAAGTAAGATTCGGGACATAAAGAAAGACACAAAATACG
ACGAAAGTAAGAAAGCCAAATTTCTTTCTTAAAAAATCGGATGATTTCTA
CTTTTCAGGTTCATATGAAGGGACACGAAATGATCGTGAAGAAAGACATG
GTCGAGGGAAGGCTATTTTGCCGAACGGGGATGTTTATGAAGGAGAGTAT
GAAAATGGAAAGAGACATGGTTATGGTGTTTACACGTAAGATGGAGAACG
GATAGAATTGATAAAGGTTTTATGTTTTTGAAGTGACATGACATCGTCTA
CAATTACTTTTGAGATCGTCGCCAGAAAAAAAGACCGTTCAGTTTGTAAA
TCATATATTGCTAGGGATTAAATTTCATGACCTTATAATCTTTAAACGAT
GCAACTTTTAAGCATTCATATTCATCCATAGGTTTGTTTCTGGTGCAAAG
TATTTAGGTCACTATGTGCATGGTCGAAAAGATGGAAGTGGAAAACTTCA
CAATGAAGATGGATCCTTTTATGATGGAAATTGGACAAATGGTATGAAGT
GTGGAAAGGGTGTCAATTGTTACAGTAATGGAGATCGTTATCAAGGAGAT
TGGTTTCATAACAAAAGACACGGGCATGGAAAATATGAGTTTAAAAAGAC
AGGTACAAATTTGCTTTAAAAAAGCTAACAAGTTTATTTTTCACCTCCCC
GAGTAAAAGATTTTCAACTTTACATAAAAATCATATTGTCATAGCGACAA
TGAAACAAACCTTCTAAAAATTAAATGTAAAATAAACTTCTTAACTTATG
AATTTTGAAATATTCAGGGGTGTCTGAAAGCTTAGGTAAAGTCAATAAAA
AATGTCCAAAACTTAAACAACTGATGACAACTTTTTATCTCTCCAAAAAC
AGGGAGCGTATACGATGGGCGCTGGGTGGATGGTCATTGGCATGGAATAG
GTGAACTTATTCACCAAAATCATCGATACGTCGGAACCTTTGATCAAGGT
CTCCCTACTGGTAAAGGAAAGTAAGTATTCAAGTCACACTCAATGGGAAT
ATAAATTTGTTCAATCTATTATGGAAGTTAGAGAATCGTTTATAAGAGTT
AAACAAATGCCTTAAAAAGCCCAAAGCTTGTTCGAGTGGAGAAAACATTC
AGGTTTTAGAGACTTTGCTGTATTTTTAAAACCGTGACTACACTTAAACA
CGAAATTTATTAGATGATTAGATAGTCCGAAAAAATATTCAAATTCTGAT
ATAAATCTTGCATATGAGCTCCACATTTTGAGAATTGGAAATTAAAGTAA
ATTACATAATGAATTCCATTTTTATAGAAATTTAGATTTAATGCATAAGT
CTTGTCTAGTAACAAAGATATAAAGAATAACAAATAGCTGAAATGTATTA
TTAAGAATATATAGCGTCCATGTTTTAAGTCCCTAAAATGTGGAGAAAAA
AAATTCTAATACAAATTAAATTACAACTACAAAAACTTTAACTTAATTTA
AAAAGTCTCAATAAGTAGAAAAGACCTAATTGGACAAAGTAGCAAACAAT
TTGTTAACTTTATGTATCACGAAACCACCCGGTAAAACCACTTAAAAGGC
ACTAAAACCAATTCTATTTTCACATTATAGGTATATTTTCAACAGTGGTA
TCGCTCAACATGGATATTTTGAAATATTGAAAAAACCTCGTATAGATGTC
ATCAAAAATTTGAATATTGAAAACAAAACTGACGAAGGAAACTGGGAACG
ACAAGC

Coding sequence (CDS) from alignment at scaffold_511:80935..84290-

>TCONS_00069950 ID=TCONS_00069950|Name=TCONS_00069950|organism=Clytia hemisphaerica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_511:80935..84290- (Clytia hemisphaerica)
GTATATTTTCAACAGTGGTATCGCTCAACATGGATATTTTGAAATATTGA
AAAAACCTCGTATAGATGTCATCAAAAATTTGAATATTGAAAACAAAACT
GACGAAGGAAACTGGGAACGACAAGGAGCGTATACGATGGGCGCTGGGTG
GATGGTCATTGGCATGGAATAGGTGAACTTATTCACCAAAATCATCGATA
CGTCGGAACCTTTGATCAAGGTCTCCCTACTGGTAAAGGAAAGTTTGTTT
CTGGTGCAAAGTATTTAGGTCACTATGTGCATGGTCGAAAAGATGGAAGT
GGAAAACTTCACAATGAAGATGGATCCTTTTATGATGGAAATTGGACAAA
TGGTATGAAGTGTGGAAAGGGTGTCAATTGTTACAGTAATGGAGATCGTT
ATCAAGGAGATTGGTTTCATAACAAAAGACACGGGCATGGAAAATATGAG
TTTAAAAAGACAGGTTCATATGAAGGGACACGAAATGATCGTGAAGAAAG
ACATGGTCGAGGGAAGGCTATTTTGCCGAACGGGGATGTTTATGAAGGAG
AGTATGAAAATGGAAAGAGACATGGTTATGGTGTTTACACATGTATTTTG
ATGAAGACGAAGATGAGGAAGTTCAAGAGCTCTTCTTAGGTATATTTTCA
ACAGTGGTATCGCTCAACATGGATATTTTGAAATATTGAAAAAACCTCGT
ATAGATGTCATCAAAAATTTGAATATTGAAAACAAAACTGACGAAGGAAA
CTGGGAACGACAAGGAGCGTATACGATGGGCGCTGGGTGGATGGTCATTG
GCATGGAATAGGTGAACTTATTCACCAAAATCATCGATACGTCGGAACCT
TTGATCAAGGTCTCCCTACTGGTAAAGGAAAGTTTGTTTCTGGTGCAAAG
TATTTAGGTCACTATGTGCATGGTCGAAAAGATGGAAGTGGAAAACTTCA
CAATGAAGATGGATCCTTTTATGATGGAAATTGGACAAATGGTATGAAGT
GTGGAAAGGGTGTCAATTGTTACAGTAATGGAGATCGTTATCAAGGAGAT
TGGTTTCATAACAAAAGACACGGGCATGGAAAATATGAGTTTAAAAAGAC
AGGTTCATATGAAGGGACACGAAATGATCGTGAAGAAAGACATGGTCGAG
GGAAGGCTATTTTGCCGAACGGGGATGTTTATGAAGGAGAGTATGAAAAT
GGAAAGAGACATGGTTATGGTGTTTACACATGTATTTTGATGAAGACGAA
GATGAGGAAGTTCAAGAGCTCTTCTTAGGTATATTTTCAACAGTGGTATC
GCTCAACATGGATATTTTGAAATATTGAAAAAACCTCGTATAGATGTCAT
CAAAAATTTGAATATTGAAAACAAAACTGACGAAGGAAACTGGGAACGAC
AAGGAGCGTATACGATGGGCGCTGGGTGGATGGTCATTGGCATGGAATAG
GTGAACTTATTCACCAAAATCATCGATACGTCGGAACCTTTGATCAAGGT
CTCCCTACTGGTAAAGGAAAGTTTGTTTCTGGTGCAAAGTATTTAGGTCA
CTATGTGCATGGTCGAAAAGATGGAAGTGGAAAACTTCACAATGAAGATG
GATCCTTTTATGATGGAAATTGGACAAATGGTATGAAGTGTGGAAAGGGT
GTCAATTGTTACAGTAATGGAGATCGTTATCAAGGAGATTGGTTTCATAA
CAAAAGACACGGGCATGGAAAATATGAGTTTAAAAAGACAGGTTCATATG
AAGGGACACGAAATGATCGTGAAGAAAGACATGGTCGAGGGAAGGCTATT
TTGCCGAACGGGGATGTTTATGAAGGAGAGTATGAAAATGGAAAGAGACA
TGGTTATGGTGTTTACACATGTATTTTGATGAAGACGAAGATGAGGAAGT
TCAAGAGCTCTTCTTAGGTATATTTTCAACAGTGGTATCGCTCAACATGG
ATATTTTGAAATATTGAAAAAACCTCGTATAGATGTCATCAAAAATTTGA
ATATTGAAAACAAAACTGACGAAGGAAACTGGGAACGACAAGGAGCGTAT
ACGATGGGCGCTGGGTGGATGGTCATTGGCATGGAATAGGTGAACTTATT
CACCAAAATCATCGATACGTCGGAACCTTTGATCAAGGTCTCCCTACTGG
TAAAGGAAAGTTTGTTTCTGGTGCAAAGTATTTAGGTCACTATGTGCATG
GTCGAAAAGATGGAAGTGGAAAACTTCACAATGAAGATGGATCCTTTTAT
GATGGAAATTGGACAAATGGTATGAAGTGTGGAAAGGGTGTCAATTGTTA
CAGTAATGGAGATCGTTATCAAGGAGATTGGTTTCATAACAAAAGACACG
GGCATGGAAAATATGAGTTTAAAAAGACAGGTTCATATGAAGGGACACGA
AATGATCGTGAAGAAAGACATGGTCGAGGGAAGGCTATTTTGCCGAACGG
GGATGTTTATGAAGGAGAGTATGAAAATGGAAAGAGACATGGTTATGGTG
TTTACACATGTATTTTGATGAAGACGAAGATGAGGAAGTTCAAGAGCTCT
TCTTAGGTATATTTTCAACAGTGGTATCGCTCAACATGGATATTTTGAAA
TATTGAAAAAACCTCGTATAGATGTCATCAAAAATTTGAATATTGAAAAC
AAAACTGACGAAGGAAACTGGGAACGACAAGGAGCGTATACGATGGGCGC
TGGGTGGATGGTCATTGGCATGGAATAGGTGAACTTATTCACCAAAATCA
TCGATACGTCGGAACCTTTGATCAAGGTCTCCCTACTGGTAAAGGAAAGT
TTGTTTCTGGTGCAAAGTATTTAGGTCACTATGTGCATGGTCGAAAAGAT
GGAAGTGGAAAACTTCACAATGAAGATGGATCCTTTTATGATGGAAATTG
GACAAATGGTATGAAGTGTGGAAAGGGTGTCAATTGTTACAGTAATGGAG
ATCGTTATCAAGGAGATTGGTTTCATAACAAAAGACACGGGCATGGAAAA
TATGAGTTTAAAAAGACAGGTTCATATGAAGGGACACGAAATGATCGTGA
AGAAAGACATGGTCGAGGGAAGGCTATTTTGCCGAACGGGGATGTTTATG
AAGGAGAGTATGAAAATGGAAAGAGACATGGTTATGGTGTTTACACATGT
ATTTTGATGAAGACGAAGATGAGGAAGTTCAAGAGCTCTTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043542XLOC_043542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069950-exon-scaffold_511-1575043694:84122..84290TCONS_00069950-exon-scaffold_511-1575043694:84122..84290Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1575043694:82938..82992TCONS_00069950-exon-scaffold_511-1575043694:82938..82992Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1575043694:82456..82582TCONS_00069950-exon-scaffold_511-1575043694:82456..82582Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1575043694:82039..82259TCONS_00069950-exon-scaffold_511-1575043694:82039..82259Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1575043694:81671..81788TCONS_00069950-exon-scaffold_511-1575043694:81671..81788Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1575043694:80935..81060TCONS_00069950-exon-scaffold_511-1575043694:80935..81060Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1510915933:84122..84290TCONS_00069950-exon-scaffold_511-1510915933:84122..84290Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1510915933:82938..82992TCONS_00069950-exon-scaffold_511-1510915933:82938..82992Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1510915933:82456..82582TCONS_00069950-exon-scaffold_511-1510915933:82456..82582Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1510915933:82039..82259TCONS_00069950-exon-scaffold_511-1510915933:82039..82259Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1510915933:81671..81788TCONS_00069950-exon-scaffold_511-1510915933:81671..81788Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1510915933:80935..81060TCONS_00069950-exon-scaffold_511-1510915933:80935..81060Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1491911889:84122..84290TCONS_00069950-exon-scaffold_511-1491911889:84122..84290Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1491911889:82938..82992TCONS_00069950-exon-scaffold_511-1491911889:82938..82992Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1491911889:82456..82582TCONS_00069950-exon-scaffold_511-1491911889:82456..82582Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1491911889:82039..82259TCONS_00069950-exon-scaffold_511-1491911889:82039..82259Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1491911889:81671..81788TCONS_00069950-exon-scaffold_511-1491911889:81671..81788Clytia hemisphaericaexon
TCONS_00069950-exon-scaffold_511-1491911889:80935..81060TCONS_00069950-exon-scaffold_511-1491911889:80935..81060Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069950-proteinTCONS_00069950-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:80935..84290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233791	0.483842	0.0661775	0.194233	0.23646	0.0622846	0	0.211046	0.0492527	0.128346	0.118431	0.122103	1.94359	1.49552	2.53732	0.618628	9.19802	9.29909	2.15784	0.602679	30.0002	29.4017	4.12194	5.73476	9.97768	7.95275	1.74877	2.07386	1.45522	1.44222
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003409MORN
Blast
[Close]
BLAST of TCONS_00069950 vs. Swiss-Prot (Human)
Match: RSPH1 (Radial spoke head 1 homolog OS=Homo sapiens GN=RSPH1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.057e-54
Identity = 92/177 (51.98%), Postives = 113/177 (63.84%), Query Frame = 2 
Query:  221 LGSYEGTRNDREERHGRGKAILPNGDVYEGEYENGKRHGYGVYTFVSGAKYLGHYVHGRKDGSGKLHNEDGSFYDGNWTNGMKCGKGVNCYSNGDRYQGDWFHNKRHGHGKYEFKKTGSVYDGRWVDGHWHGIGELIHQNHRYVGTFDQGLPTGKGKYIFNSGIAQHGYFEILKKPR 751
            +G YEG RN+  ERHGRG+A LPNGD YEG YE GKRHG G+Y F +GA+Y+G YV  +K G G     DGS Y+G W N ++ G GV  Y N D Y G+WF ++RHG G Y + +TGS Y G WV+G   G  ELIH NHRY G F    P G GKY+F+ G  QHG + +    R
Sbjct:   17 IGEYEGGRNEAGERHGRGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARYIGEYVRNKKHGQGTFIYPDGSRYEGEWANDLRHGHGVYYYINNDTYTGEWFAHQRHGQGTYLYAETGSKYVGTWVNGQQEGTAELIHLNHRYQGKFLNKNPVGPGKYVFDVGCEQHGEYRLTDMER 193
The following BLAST results are available for this feature:
BLAST of TCONS_00069950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSPH13.057e-5451.98Radial spoke head 1 homolog OS=Homo sapiens GN=RSP... [more]
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