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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069941 ID=TCONS_00069941|Name=TCONS_00069941|organism=Clytia hemisphaerica|type=transcript|length=2174bp
GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT
AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG
TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC
TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT
GTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATG
GTAATGAGAAAGGTTATTTAAAGTGTTTGCATAATTATATTTAGTTTTAA
AATACAAGTCTTTTCTCTCATAACCATCTGTATGTGAAAGTTTTTccatc
atttttttcaagtaGTTGGAAAGTCTTCTCATATGTCCTTGTGTTTCAAA
AAGATGAATCAAATCATTCTGTACATCAATCAATTTCataagaaagatat
tttcaacatctttttcaCAGATGAAAAGAAAATGCTGGTACCAGTATTTG
CCatccatttttttttcttgacttCTGCAATTTCTCATGTCTTCAATAAA
GGTATTTGCTAGCTCTTGATAGACTGGTTCTTTGACATTTGGAACGTAAG
TTTTGAGAAAGGTTTGAGTTAGTTCGTGACAATTTATTTGGTTTTCTAGA
AAGCATGTACCTGTGTTCGTGGTTTCAATGATTGAGTACTTGGCCAATAA
AGATAATATCTTATTTAGAACAAATACATCATCAACAAATTTGATCAGTA
ATCCTTTCCTGATGACTTTTCCATCCAAGTAGGAGATTTTGTTTAGAAGA
TCATTAACTTTTTGACCACCTTCCTGTAATAATCTATTATAGGTCAAAGA
CAAAGTAGTATAAACTGAAGGGTTTCCGATTTCTTGGGTTCCCTCTGAAA
GAAgttctttttgtcttttatcGAATATGGTTAGGTACATTTCAACAGTT
AGTCCATTCTTATTAATAAATGAAAACGCCTGCTGTAGAGCAAGGGGTAG
ATAGCTGAGAGATTTTAGAAGTTTTTGGTTTGCTTCTTTATCTTTGCGTG
CGTCTACATCGTGGATATTTCTCTCTAAGAACTGTTCAGCCTCTTTGCTA
GAAAATTGTTTTATCTTGATAACATCGAATCGTTGATCCCATTCACCGCA
TTGTGAGGTGATGAGAAAATATGGTGCTTCCTTTTTGGTGTCAGGAATCA
AATCGACCAAAGCAGCCTGATTGATGACATTGTCTAGGACAAACAATACT
TTACGGGGTTTATTCACATCCTGTCTTACTGAGAAGTAATCGTAAACAAG
ATTTGAGATCTCTTTCAATGGTTTGGCTGACCCATTTTGATTATAGATCT
GATTAATGCCACATCGGTTGGCGATCTCGGTGAATGATTTTTCGATGTTG
ACCAAGCTGTTACAGTTAATCCAACAAACGATATCCTCGTAATAAACATT
ACGATAGGATTGCCAATACTCGCGAGCAGTTTCTGACTTTCCACTGCCCC
CAATCCCACTGATGACAACAGAGAATTTGAAGTCATCGTGGTGTTGACGG
TAAACTGCTTGGTGAATATTGCTGATCAGGTTTGCTCTTCTGAAGTGGTT
GGCAACTGGCGGTAGACAGGCATAATTGAAAGAAGTCTTGGTCATCAGTT
TTTTCACTTTAGAACCAGCAATCCATATATTACATATGTCATCAAATTCA
GCCTTGGATAGCCCTAGCTGTAATAAGGGTGGTTCTGCATCACTTAGTAT
GGCATTGAATTCCGGTAGACTGACTTTGGTACCACCATGTTGGATCCTAT
TCCTGATTTTTATCAAATCTTTCATATTTTCTCCGAAGAACTCTCTAGTT
ACAAAAAAGAGGAGTGTACTGTCAAACTGGTCAAGGTAGACCATTCCAGA
AGTTGGAAGGAGTAATTTGTATTGCTCATCTTTGATGACATTTTTTCTCC
TCAGTTTATCGATTGTAGCTTTATGTGATAGAAAGAATTGAAATACTTTT
GCTGGATCTCGTGTGTTCAGTTTTTTGTGTATTCTCTCTCGCAGCTGGTT
GTCTAATTTGCCAAGGAGAACCTGGCAACGAAACCCTCTTTCTTGGTCCT
CGTCAGTATGTGACTGTGTACTCA Run BLAST on NCBI transcript from alignment at scaffold_511:593631..597190+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069941 ID=TCONS_00069941|Name=TCONS_00069941|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at scaffold_511:593631..597190+ (Clytia hemisphaerica)
GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT
AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG
TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC
TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT
GTCCGATCTCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCCTCATG
GTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGATGA
GGTAACTGTTGTGACGTTCACCAAGAGTGTCCTTTTGAACGCTTTCGGTT
TCTTTAAATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACA
GTTTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCA
TGGTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGA
GAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGA
TTTCTTTAAATATACGTAATGCGTcttgattttgagataaattctCTAAA
CATTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACC
GAGAGTGTCCTTTCGAACGGTTTCGATTTCTTCAAATATACGTAATGCGT
CATGGTAATGAGATAAATTCTTTAAACATTGTCCGATCTCATGCTTCGTG
ATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTTAACGGTTTC
GATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTA
AACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACGTTCA
CCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGC
TTCATGATAATGAGATAAATTCATGAAACAGTGTCCAATGGCATGCTTCG
TGGAGAGGTAACGGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTT
TCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTC
TAAACATTGTCCGATCTCATGCTTCGTGGAGAGGTAATGGTTGTGACGTT
CACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTAAT
GCTTCATGATAATGAGATAAATTCTTTAAACAGTGTCCAATGGCATGCTT
CGTGATGAGGTAACTGTTGTGACGTTCGCCGAGAGTGTCCTTTTCAACGG
TTTCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTC
TCTAAACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACG
TTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTA
ATGCTTCATGATAATGAGATAAATTCATTAAACAGTGTCCAATGGCATGC
TTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAAC
GGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGAAAGGT
TATTTAAAGTGTTTGCATAATTATATTTAGTTTTAAAATACAAGTCTTTT
CTCTCATAACCATCTGTATGTGAAAGTTTTTccatcatttttttcaagta
GTTGGAAAGTCTTCTCATATGTCCTTGTGTTTCAAAAAGATGAATCAAAT
CATTCTGTACATCAATCAATTTCataagaaagatattttcaacatctttt
tcaCAGATGAAAAGAAAATGCTGGTACCAGTATTTGCCatccattttttt
ttcttgacttCTGCAATTTCTCATGTCTTCAATAAAGGTATTTGCTAGCT
CTTGATAGACTGGTTCTTTGACATTTGGAACGTAAGTTTTGAGAAAGGTT
TGAGTTAGTTCGTGACAATTTATTTGGTTTTCTAGAAAGCATGTACCTGT
GTTCGTGGTTTCAATGATTGAGTACTTGGCCAATAAAGATAATATCTTAT
TTAGAACAAATACATCATCAACAAATTTGATCAGTAATCCTTTCCTGATG
ACTTTTCCATCCAAGTAGGAGATTTTGTTTAGAAGATCATTAACTTTTTG
ACCACCTTCCTGTAATAATCTATTATAGGTCAAAGACAAAGTAGTATAAA
CTGAAGGGTTTCCGATTTCTTGGGTTCCCTCTGAAAGAAgttctttttgt
cttttatcGAATATGGTTAGGTACATTTCAACAGTTAGTCCATTCTTATT
AATAAATGAAAACGCCTGCTGTAGAGCAAGGGGTAGATAGCTGAGAGATT
TTAGAAGTTTTTGGTTTGCTTCTTTATCTTTGCGTGCGTCTACATCGTGG
ATATTTCTCTCTAAGAACTGTTCAGCCTCTTTGCTAGAAAATTGTTTTAT
CTTGATAACATCGAATCGTTGATCCCATTCACCGCATTGTGAGGTGATGA
GAAAATATGGTGCTTCCTTTTTGGTGTCAGGAATCAAATCGACCAAAGCA
GCCTGATTGATGACATTGTCTAGGACAAACAATACTTTACGGGGTTTATT
CACATCCTGTCTTACTGAGAAGTAATCGTAAACAAGATTTGAGATCTCTT
TCAATGGTTTGGCTGACCCATTTTGATTATAGATCTGATTAATGCCACAT
CGGTTGGCGATCTCGGTGAATGATTTTTCGATGTTGACCAAGCTGTTACA
GTTAATCCAACAAACGATATCCTCGTAATAAACATTACGATAGGATTGCC
AATACTCGCGAGCAGTTTCTGACTTTCCACTGCCCCCAATCCCACTGATG
ACAACAGAGAATTTGAAGTCATCGTGGTGTTGACGGTAAACTGCTTGGTG
AATATTGCTGATCAGGTTTGCTCTTCTGAAGTGGTTGGCAACTGGCGGTA
GACAGGCATAATTGAAAGAAGTCTTGGTCATCAGTTTTTTCACTTTAGAA
CCAGCAATCCATATATTACATATGTCATCAAATTCAGCCTTGGATAGCCC
TAGCTGTAATAAGGGTGGTTCTGCATCACTTAGTATGGCATTGAATTCCG
GTAGACTGACTTTGGTACCACCATGTTGGATCCTATTCCTGATTTTTATC
AAATCTTTCATATTTTCTCCGAAGAACTCTCTAGTTACAAAAAAGAGGAG
TGTACTGTCAAACTGGTCAAGGTAGACCATTCCAGAAGTTGGAAGGAGTA
ATTTGTATTGCTCATCTTTGATGACATTTTTTCTCCTCAGTTTATCGATT
GTAGCTTTATGTGATAGAAAGAATTGAAATACTTTTGCTGGATCTCGTGT
GTTCAGTTTTTTGTGTATTCTCTCTCGCAGCTGGTTGTCTAATTTGCCAA
GGAGAACCTGGCAACGAAACCCTCTTTCTTGGTCCTCGTCAGTATGTGAC
TGTGTACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069941-exon-scaffold_511-1491911889:593631..593827 | TCONS_00069941-exon-scaffold_511-1491911889:593631..593827 | Clytia hemisphaerica | exon |
| TCONS_00069941-exon-scaffold_511-1510915933:593631..593827 | TCONS_00069941-exon-scaffold_511-1510915933:593631..593827 | Clytia hemisphaerica | exon |
| TCONS_00069941-exon-scaffold_511-1575043694:593631..593827 | TCONS_00069941-exon-scaffold_511-1575043694:593631..593827 | Clytia hemisphaerica | exon |
| TCONS_00069941-exon-scaffold_511-1491911889:594584..594611 | TCONS_00069941-exon-scaffold_511-1491911889:594584..594611 | Clytia hemisphaerica | exon |
| TCONS_00069941-exon-scaffold_511-1510915933:594584..594611 | TCONS_00069941-exon-scaffold_511-1510915933:594584..594611 | Clytia hemisphaerica | exon |
| TCONS_00069941-exon-scaffold_511-1575043694:594584..594611 | TCONS_00069941-exon-scaffold_511-1575043694:594584..594611 | Clytia hemisphaerica | exon |
| TCONS_00069941-exon-scaffold_511-1491911889:595242..597190 | TCONS_00069941-exon-scaffold_511-1491911889:595242..597190 | Clytia hemisphaerica | exon |
| TCONS_00069941-exon-scaffold_511-1510915933:595242..597190 | TCONS_00069941-exon-scaffold_511-1510915933:595242..597190 | Clytia hemisphaerica | exon |
| TCONS_00069941-exon-scaffold_511-1575043694:595242..597190 | TCONS_00069941-exon-scaffold_511-1575043694:595242..597190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:593631..597190 + |
Blast
The following BLAST results are available for this feature:
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