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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069930 ID=TCONS_00069930|Name=TCONS_00069930|organism=Clytia hemisphaerica|type=transcript|length=1684bp
NNGGAGCATGTGGCGGATATGGAGGCTACGGAAGTCAAGGTTACGGAATG
GGTGGAGGCTATGGTCAACAAGGTTATGGAATGGGTGGTTACGACCAACA
AGGTTACGGTATGGGCGGCTACGGCCAACACGGTTACGGAATGGGCGGCT
ACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGTTACGGA
ATGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCTATGGTCAACA
AGGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGTTACGGAATGG
GCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGT
TACGGAATGGGCGCTTACGGACATACTGGATATGGAGGTATGGGTGGCTA
TGGAGGCTATGGTCAACAAGGCTACGGAATGGGAGGATACGGTGGTTATG
GTATGGATGGTGGCTACGGTATGGGAGGTTATGGTCAAGGGTACGGTCAT
GCTGGATATGGAATGGGAGCAGGATATGGTGGAGCTTACGGTGGTTATGG
TGTGGGTGGTGGCTATGGAGGCTACGGAAACATGGGTGCACCAGCCCTAG
GAGCACCAGCTCAATCAACTGGTCCAAAATATCCAGGACCTAACCCACCT
GCATTGACGTTACCACAAAAAGCCAAAGCACGTCAATTGATCATTACTGA
AGATGATGAGGATGACACCAGCTCGCGAAGAAAAGACATCCCAAAAGACG
GTCATCATTTACATCGTCTGTTAGTCTTGCCAGGAGAATGTGAAGGTGAT
CATTGTACTACCAACTTCCCAGTACACGGAGGACGTGGTGGTGGTTGTCA
AGGTGCTGGATGTGGTGGATACGGTCACCAAGGCTTCGGTGGAAACTGGG
ATGCAGCTGATTGTGGTCATTCAGATTGTGGAGGTTTGGGATTTGGTAAC
GGATACGGTGTTGGTTGTGGAGGCGGTGATTGTGGTGGTTTCCATGATAT
TCATCATCGTCCAATCGGATGTCCCGAATACAACTCACCAGACTCGCCAT
GTTTAACTTACCCATACGGTAACAATGTTGGTTTCGGATTTCCAGGAAAA
TTCCACAGCCACCATCCAGTTTTGTTGCACCCAACACATCAAGAAACAGC
CCATCATAACATCCATTTATCTGGTCGAAGCCATGGTGGGCGTCACGGAC
GTCGCCATAGCGGAGATTTGATCGTATTACCACATTACGGGCATACTTGT
TGTGGAGGTGCTGGATGGAATCCATACTGGGGACATTGAACGTCTTAACG
ACGTGAAAAACTGTATCATAAAGAACACTaattttttagtatttgaatTT
TATATAAACACCAcgcaaacaaaattgaaaacccCAGTTGAATTTATATT
CATTTCAATGcctttttttgaaatcaaattcaTCATAAAAACGACTTCGT
GCTTTAAAGAAATAAGCTGAAAAATCATGTTTTCGCTATGCGTTGCTTTG
GAAAATGTGGCAAATCTATTTTATATAAACCTTAGCATCATTTCATGTAA
TTAGAAGCTAGATTTATGTAGCCCAACTTATATTGTAAACTCGTTCATCT
TcgtttttgaaagaaagttttgaaaataaattgatacTGATCTTAATCCA
GGAAAAATATACTCTGCTGGGGGTACTCTCCCTG Run BLAST on NCBI transcript from alignment at scaffold_511:454274..456173+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069930 ID=TCONS_00069930|Name=TCONS_00069930|organism=Clytia hemisphaerica|type=transcript|length=1900bp|location=Sequence derived from alignment at scaffold_511:454274..456173+ (Clytia hemisphaerica)
NNGGAGCATGTGGCGGATATGGAGGCTACGGAAGTCAAGGTTACGGAATG
GGTGGAGGCTATGGTCAACAAGGTTATGGAATGGGTGGTTACGACCAACA
AGGTTACGGTATGGGCGGCTACGGCCAACACGGTTACGGAATGGGCGGCT
ACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGTTACGGA
ATGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCTATGGTCAACA
AGGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGTTACGGAATGG
GCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGT
TACGGAATGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCTATGG
TCAACAAGGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGTTACG
GAATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAA
CAAGGTTACGGAATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGCGG
CTATGGTCAACAAGGTTACGGAATGGGCGCTTACGGACATACTGGATATG
GAGGTATGGGTGGCTATGGAGGCTATGGTCAACAAGGCTACGGAATGGGA
GGATACGGTGGTTATGGTATGGATGGTGGCTACGGTATGGGAGGTTATGG
TCAAGGGTACGGTCATGCTGGATATGGAATGGGAGCAGGATATGGTGGAG
CTTACGGTGGTTATGGTGTGGGTGGTGGCTATGGAGGCTACGGAAACATG
GGTGCACCAGCCCTAGGAGCACCAGCTCAATCAACTGGTCCAAAATATCC
AGGACCTAACCCACCTGCATTGACGTTACCACAAAAAGCCAAAGCACGTC
AATTGATCATTACTGAAGATGATGAGGATGACACCAGCTCGCGAAGAAAA
GACATCCCAAAAGACGGTCATCATTTACATCGTCTGTTAGTCTTGCCAGG
AGAATGTGAAGGTGATCATTGTACTACCAACTTCCCAGTACACGGAGGAC
GTGGTGGTGGTTGTCAAGGTGCTGGATGTGGTGGATACGGTCACCAAGGC
TTCGGTGGAAACTGGGATGCAGCTGATTGTGGTCATTCAGATTGTGGAGG
TTTGGGATTTGGTAACGGATACGGTGTTGGTTGTGGAGGCGGTGATTGTG
GTGGTTTCCATGATATTCATCATCGTCCAATCGGATGTCCCGAATACAAC
TCACCAGACTCGCCATGTTTAACTTACCCATACGGTAACAATGTTGGTTT
CGGATTTCCAGGAAAATTCCACAGCCACCATCCAGTTTTGTTGCACCCAA
CACATCAAGAAACAGCCCATCATAACATCCATTTATCTGGTCGAAGCCAT
GGTGGGCGTCACGGACGTCGCCATAGCGGAGATTTGATCGTATTACCACA
TTACGGGCATACTTGTTGTGGAGGTGCTGGATGGAATCCATACTGGGGAC
ATTGAACGTCTTAACGACGTGAAAAACTGTATCATAAAGAACACTaattt
tttagtatttgaatTTTATATAAACACCAcgcaaacaaaattgaaaaccc
CAGTTGAATTTATATTCATTTCAATGcctttttttgaaatcaaattcaTC
ATAAAAACGACTTCGTGCTTTAAAGAAATAAGCTGAAAAATCATGTTTTC
GCTATGCGTTGCTTTGGAAAATGTGGCAAATCTATTTTATATAAACCTTA
GCATCATTTCATGTAATTAGAAGCTAGATTTATGTAGCCCAACTTATATT
GTAAACTCGTTCATCTTcgtttttgaaagaaagttttgaaaataaattga
tacTGATCTTAATCCAGGAAAAATATACTCTGCTGGGGGTACTCTCCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069930-exon-scaffold_511-1491911889:454274..454621 | TCONS_00069930-exon-scaffold_511-1491911889:454274..454621 | Clytia hemisphaerica | exon |
| TCONS_00069930-exon-scaffold_511-1510915933:454274..454621 | TCONS_00069930-exon-scaffold_511-1510915933:454274..454621 | Clytia hemisphaerica | exon |
| TCONS_00069930-exon-scaffold_511-1575043694:454274..454621 | TCONS_00069930-exon-scaffold_511-1575043694:454274..454621 | Clytia hemisphaerica | exon |
| TCONS_00069930-exon-scaffold_511-1491911889:454838..456173 | TCONS_00069930-exon-scaffold_511-1491911889:454838..456173 | Clytia hemisphaerica | exon |
| TCONS_00069930-exon-scaffold_511-1510915933:454838..456173 | TCONS_00069930-exon-scaffold_511-1510915933:454838..456173 | Clytia hemisphaerica | exon |
| TCONS_00069930-exon-scaffold_511-1575043694:454838..456173 | TCONS_00069930-exon-scaffold_511-1575043694:454838..456173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:454274..456173 + |
Blast
The following BLAST results are available for this feature:
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