TCONS_00069918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069918
Unique NameTCONS_00069918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069918 ID=TCONS_00069918|Name=TCONS_00069918|organism=Clytia hemisphaerica|type=transcript|length=1342bp
AAACAATTCGGACAATCGTTAACTTTTAGTAAACTGGAATCAATTTACAA
AAATGTAGGAATTAATAACGGTTGGTGGGGATGAAAATAGGAGGCAGTGT
TGATGaatcctaataaggacgaaatgtaTGCACCTGCTCGGCCACacaaa
tctcctgagtgaatatagttggacagaaattatttatataaaaatgttAC
ACAGAATGTACCTCATAATGATACCTTCTTATTgtagaaaaacacaaaaa
gaaataaaaatgtcaaaacgTCAAAGAGGTGTTCATTCACCTCCCATCGC
AAAAATGGTTCTGCTTGGAAATGAAGGCGTCGGAAAATCAGCGCTGATGG
TTCGTTTTTTCACGCGGCGTTTCATTGGAGAATACGATCCTACGTTAGAA
TCAACACATCGACGTCATTTGGGTATCGGCAACTCTACCATGATTATTGA
TATGAAAGATACAGCTGGAGAaaACGATACACAACGACGGGAAATCGATT
TCGTTTGGGGCGATGTTTTCGTACTTGTTTACTCCATCATAGATCGAAAA
AGTTTCCAagaaatacaaaaattacgaaaaGTCATTGAAATGATGCGAGG
ACCTAATACAACTTTCGTCGTTATTGGCAATAAAAAAGACTTGTCGCATT
TACGCGAAGTTTCGAAAGAGGAAGGTAAAAAATGGGCGGAGAAACATAAC
GccctatttttcgaaatctcCGTCGCAGAGGACTACCATGAGACTCAAAA
AGTATTCAATGAAATTATACGGTATATCATTTGTCAGAAAGCAAGGGAGG
AGAGCACGACGGGTAAAAAACGGAACCATAGTTATTCATCTTTATGGAAA
GGGATGAAATCACGTGATCAGAAAGACAAGAAACATGAACACGTGATACA
TATACAATCATCTGGTGGTTATTCTTCATAGCGTAAAGCGTGAATACTAC
TAGTCTAGGAAAGCAGACGAATCAAGGCTATGGAGGCATTAAAGGCTTTC
GTTGATGATTCACAAATACAGCCTGGGGATGATATGAGGCGAGATGATAC
AATGAGAAAACTAAACAAGTCTGAAGATATAATTTTGGGAAAGACAATTT
CAACATCAAGCCATCAAATCCGTTATAAGTTgcacaaaaaatctcaaaaa
ccgaTCTTCAAAACCATATTTACATGTCCAATTTTCAGGACAGTTGtata
attttgcatttttttaaaagttttataagtatttttgtgttttgtaaATA
TCTAAAtagtaaattctttttttttcctttttgtacaTGGAAATTATTTa
agaactttttttataatttttttataaggatttttttTGGCG
Run BLAST on NCBI

protein sequence of TCONS_00069918-protein

>TCONS_00069918-protein ID=TCONS_00069918-protein|Name=TCONS_00069918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MHLLGHTNLLSEYSWTEIIYIKMLHRMYLIMIPSYCRKTQKEIKMSKRQR
GVHSPPIAKMVLLGNEGVGKSALMVRFFTRRFIGEYDPTLESTHRRHLGI
GNSTMIIDMKDTAGENDTQRREIDFVWGDVFVLVYSIIDRKSFQEIQKLR
KVIEMMRGPNTTFVVIGNKKDLSHLREVSKEEGKKWAEKHNALFFEISVA
EDYHETQKVFNEIIRYIICQKAREESTTGKKRNHSYSSLWKGMKSRDQKD
KKHEHVIHIQSSGGYSS
Run BLAST on NCBI

transcript from alignment at scaffold_511:357485..359751+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069918 ID=TCONS_00069918|Name=TCONS_00069918|organism=Clytia hemisphaerica|type=transcript|length=2267bp|location=Sequence derived from alignment at scaffold_511:357485..359751+ (Clytia hemisphaerica)
AAACAATTCGGACAATCGTTAACTTTTAGTAAACTGGAATCAATTTACAA
AAATGTAGGAATTAATAACGGTTGGTGGGGATGAAAATAGGAGGCAGTGT
TGATGaatcctaataaggacgaaatgtaTGCACCTGCTCGGCCACacaaa
tctcctgagtgaatatagttggacagaaattatttatataaaaatgttAC
ACAGAATGTACCTCATAATGATACCTTCTTATTgtagaaaaacacaaaaa
gaaataaaaatgtcaaaacgTCAAAGAGGTGTTCATTCACCTCCCATCGC
AAAAATGGTTCTGCTTGGAAATGAAGGCGTCGGAAAATCAGGTAAGTTCA
TCGATTTGacgaagaaagaagaaaacctCAAACTATGTACTGGGGTTACA
TCGAATGGTTTTATATAGAAATCATGCTATTTTTAACATCACAGCAACTT
TCGGTTTTCAAATTGACGTATAAGAATTTTGGGAATGTTTTAGCGGGCAA
CCACTAATTCCGTGCCATAAATCATGCACATCCGGACAAATATGTCAGCA
AAATTCCAAGATGTCTAATTTTGAAGTGTAGGGTTTATACGAGTGGGGGA
GAAGTCTTTTACCAAAAGTTGTTTTATTTTACTACATTTAAACCAAATGG
ATCAAAAAAAGTCAATAACTAGTACCAGCAACTGAAACCCAAATCACTCA
ACGATATATTTCTCTCTTTAGCGCTGATGGTTCGTTTTTTCACGCGGCGT
TTCATTGGAGAATACGATCCTACGTTAGGTAAGAATACAAATCCGTTTGT
TACTTTACTTGAGAAACTGAGCCCAATGAACTAAGTATTCAAATGCCGGA
GCGACTGAAATATCTCGCAAACATGTTGCATTATAATATCATCTCACGTA
TAACGTAGCGCAGAACGGCAATGAATTTCGAAGTTTCCAAAGATATGGGG
TCTGTTTACAGACAGTCATAATATATAAATGAGAACATCCATCTCAGAAG
TTTTGTGCAATTTGAACTTCTTCTACCTTAGAATCAACACATCGACGTCA
TTTGGGTATCGGCAACTCTACCATGATTATTGATATGAAAGATACAGCTG
GAGAagtaagaacacatatttcgtGACCTTTTCTAATCTCAAAGTTATAG
GGTAAAAATTTCGGTTTGAGGTTGACGTTTCTTCTCAATTCTTTAAAGTT
AAAATCTCACGAAGTAAAGTCACTTCTCCGTTCTCGACagctaaaagcca
attttcgtTGGGAATTCAGAGTGTCTAAGGGATTTGTGCAATGCTTTGAG
CAAAGAGCTACACCTTTAAACCTTTCGAATTGACTTTGCGACATACTCTC
GAATCAAAGGAAGATTCTGAACgatatcatattttttcattttacagaAC
GATACACAACGACGGGAAATCGATTTCGTTTGGGGCGATGTTTTCGTACT
TGTTTACTCCATCATAGATCGAAAAAGTTTCCAagaaatacaaaaattac
gaaaaGTCATTGAAATGATGCGAGGACCTAATACAACTTTCGTCGTTATT
GGCAATAAAAAAGACTTGTCGCATTTACGCGAAGTTTCGAAAGAGGAAGG
TAAAAAATGGGCGGAGAAACATAACGccctatttttcgaaatctcCGTCG
CAGAGGACTACCATGAGACTCAAAAAGTATTCAATGAAATTATACGGTAT
ATCATTTGTCAGAAAGCAAGGGAGGAGAGCACGACGGGTAAAAAACGGAA
CCATAGTTATTCATCTTTATGGAAAGGGATGAAATCACGTGATCAGAAAG
ACAAGAAACATGAACACGTGATACATATACAATCATCTGGTGGTTATTCT
TCATAGCGTAAAGCGTGAATACTACTAGTCTAGGAAAGCAGACGAATCAA
GGCTATGGAGGCATTAAAGGCTTTCGTTGATGATTCACAAATACAGCCTG
GGGATGATATGAGGCGAGATGATACAATGAGAAAACTAAACAAGTCTGAA
GATATAATTTTGGGAAAGACAATTTCAACATCAAGCCATCAAATCCGTTA
TAAGTTgcacaaaaaatctcaaaaaccgaTCTTCAAAACCATATTTACAT
GTCCAATTTTCAGGACAGTTGtataattttgcatttttttaaaagtttta
taagtatttttgtgttttgtaaATATCTAAAtagtaaattcttttttttt
cctttttgtacaTGGAAATTATTTaagaactttttttataatttttttat
aaggatttttttTGGCG

Coding sequence (CDS) from alignment at scaffold_511:357485..359751+

>TCONS_00069918 ID=TCONS_00069918|Name=TCONS_00069918|organism=Clytia hemisphaerica|type=CDS|length=3216bp|location=Sequence derived from alignment at scaffold_511:357485..359751+ (Clytia hemisphaerica)
aTGCACCTGCTCGGCCACacaaatctcctgagtgaatatagttggacaga
aattatttatataaaaatgttACACAGAATGTACCTCATAATGATACCTT
CTTATTgtagaaaaacacaaaaagaaataaaaatgtcaaaacgTCAAAGA
GGTGTTCATTCACCTCCCATCGCAAAAATGGTTCTGCTTGGAAATGAAGG
CGTCGGAAAATCAGCGCTGATGGTTCGTTTTTTCACGCGGCGTTTCATTG
GAGAATACGATCCTACGTTAGAATCAACACATCGACGTCATTTGGGTATC
GGCAACTCTACCATGATTATTGATATGAAAGATACAGCTGGAGAaaACGA
TACACAACGACGGGAAATCGATTTCGTTTGGGGCGATGTTTTCGTACTTG
TTTACTCCATCATAGATCGAAAAAGTTTCCAagaaatacaaaaattacga
aaaGTCATTGAAATGATGCGAGGACCTAATACAACTTTCGTCGTTATTGG
CAATAAAAAAGACTTGTCGCATTTACGCGAAGTTTCGAAAGAGGAAGGTA
AAAAATGGGCGGAGAAACATAACGccctatttttcgaaatctcCGTCGCA
GAGGACTACCATGAGACTCAAAAAGTATTCAATGAAATTATACGGTATAT
CATTTGTCAGAAAGCAAGGGAGGAGAGCACGACGGGTAAAAAACGGAACC
ATAGTTATTCATCTTTATGGAAAGGGATGAAATCACGTGATCAGAAAGAC
AAGAAACATGAACACGTGATACATATACAATCATCTGGTGGTTATTCTTC
ATAGaTGCACCTGCTCGGCCACacaaatctcctgagtgaatatagttgga
cagaaattatttatataaaaatgttACACAGAATGTACCTCATAATGATA
CCTTCTTATTgtagaaaaacacaaaaagaaataaaaatgtcaaaacgTCA
AAGAGGTGTTCATTCACCTCCCATCGCAAAAATGGTTCTGCTTGGAAATG
AAGGCGTCGGAAAATCAGCGCTGATGGTTCGTTTTTTCACGCGGCGTTTC
ATTGGAGAATACGATCCTACGTTAGAATCAACACATCGACGTCATTTGGG
TATCGGCAACTCTACCATGATTATTGATATGAAAGATACAGCTGGAGAaa
ACGATACACAACGACGGGAAATCGATTTCGTTTGGGGCGATGTTTTCGTA
CTTGTTTACTCCATCATAGATCGAAAAAGTTTCCAagaaatacaaaaatt
acgaaaaGTCATTGAAATGATGCGAGGACCTAATACAACTTTCGTCGTTA
TTGGCAATAAAAAAGACTTGTCGCATTTACGCGAAGTTTCGAAAGAGGAA
GGTAAAAAATGGGCGGAGAAACATAACGccctatttttcgaaatctcCGT
CGCAGAGGACTACCATGAGACTCAAAAAGTATTCAATGAAATTATACGGT
ATATCATTTGTCAGAAAGCAAGGGAGGAGAGCACGACGGGTAAAAAACGG
AACCATAGTTATTCATCTTTATGGAAAGGGATGAAATCACGTGATCAGAA
AGACAAGAAACATGAACACGTGATACATATACAATCATCTGGTGGTTATT
CTTCATAGaTGCACCTGCTCGGCCACacaaatctcctgagtgaatatagt
tggacagaaattatttatataaaaatgttACACAGAATGTACCTCATAAT
GATACCTTCTTATTgtagaaaaacacaaaaagaaataaaaatgtcaaaac
gTCAAAGAGGTGTTCATTCACCTCCCATCGCAAAAATGGTTCTGCTTGGA
AATGAAGGCGTCGGAAAATCAGCGCTGATGGTTCGTTTTTTCACGCGGCG
TTTCATTGGAGAATACGATCCTACGTTAGAATCAACACATCGACGTCATT
TGGGTATCGGCAACTCTACCATGATTATTGATATGAAAGATACAGCTGGA
GAaaACGATACACAACGACGGGAAATCGATTTCGTTTGGGGCGATGTTTT
CGTACTTGTTTACTCCATCATAGATCGAAAAAGTTTCCAagaaatacaaa
aattacgaaaaGTCATTGAAATGATGCGAGGACCTAATACAACTTTCGTC
GTTATTGGCAATAAAAAAGACTTGTCGCATTTACGCGAAGTTTCGAAAGA
GGAAGGTAAAAAATGGGCGGAGAAACATAACGccctatttttcgaaatct
cCGTCGCAGAGGACTACCATGAGACTCAAAAAGTATTCAATGAAATTATA
CGGTATATCATTTGTCAGAAAGCAAGGGAGGAGAGCACGACGGGTAAAAA
ACGGAACCATAGTTATTCATCTTTATGGAAAGGGATGAAATCACGTGATC
AGAAAGACAAGAAACATGAACACGTGATACATATACAATCATCTGGTGGT
TATTCTTCATAGaTGCACCTGCTCGGCCACacaaatctcctgagtgaata
tagttggacagaaattatttatataaaaatgttACACAGAATGTACCTCA
TAATGATACCTTCTTATTgtagaaaaacacaaaaagaaataaaaatgtca
aaacgTCAAAGAGGTGTTCATTCACCTCCCATCGCAAAAATGGTTCTGCT
TGGAAATGAAGGCGTCGGAAAATCAGCGCTGATGGTTCGTTTTTTCACGC
GGCGTTTCATTGGAGAATACGATCCTACGTTAGAATCAACACATCGACGT
CATTTGGGTATCGGCAACTCTACCATGATTATTGATATGAAAGATACAGC
TGGAGAaaACGATACACAACGACGGGAAATCGATTTCGTTTGGGGCGATG
TTTTCGTACTTGTTTACTCCATCATAGATCGAAAAAGTTTCCAagaaata
caaaaattacgaaaaGTCATTGAAATGATGCGAGGACCTAATACAACTTT
CGTCGTTATTGGCAATAAAAAAGACTTGTCGCATTTACGCGAAGTTTCGA
AAGAGGAAGGTAAAAAATGGGCGGAGAAACATAACGccctatttttcgaa
atctcCGTCGCAGAGGACTACCATGAGACTCAAAAAGTATTCAATGAAAT
TATACGGTATATCATTTGTCAGAAAGCAAGGGAGGAGAGCACGACGGGTA
AAAAACGGAACCATAGTTATTCATCTTTATGGAAAGGGATGAAATCACGT
GATCAGAAAGACAAGAAACATGAACACGTGATACATATACAATCATCTGG
TGGTTATTCTTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043533XLOC_043533Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069918-exon-scaffold_511-1491911889:357485..357825TCONS_00069918-exon-scaffold_511-1491911889:357485..357825Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1510915933:357485..357825TCONS_00069918-exon-scaffold_511-1510915933:357485..357825Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1575043694:357485..357825TCONS_00069918-exon-scaffold_511-1575043694:357485..357825Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1491911889:358206..358262TCONS_00069918-exon-scaffold_511-1491911889:358206..358262Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1510915933:358206..358262TCONS_00069918-exon-scaffold_511-1510915933:358206..358262Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1575043694:358206..358262TCONS_00069918-exon-scaffold_511-1575043694:358206..358262Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1491911889:358516..358589TCONS_00069918-exon-scaffold_511-1491911889:358516..358589Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1510915933:358516..358589TCONS_00069918-exon-scaffold_511-1510915933:358516..358589Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1575043694:358516..358589TCONS_00069918-exon-scaffold_511-1575043694:358516..358589Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1491911889:358882..359751TCONS_00069918-exon-scaffold_511-1491911889:358882..359751Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1510915933:358882..359751TCONS_00069918-exon-scaffold_511-1510915933:358882..359751Clytia hemisphaericaexon
TCONS_00069918-exon-scaffold_511-1575043694:358882..359751TCONS_00069918-exon-scaffold_511-1575043694:358882..359751Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069918-proteinTCONS_00069918-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:357485..359751 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0313131	0	0.0354543	0.069373	4.01161	3.60382	3.0596	3.20356	1.37212	2.05912	2.12553	0.625631	8.28849	5.92589	20.0921	18.6043	30.3235	19.9013	6.08149	3.86635	18.1652	17.0561	5.31364	5.15728	6.99285	10.3216	0.901666	0.45823	0.625592	0.956069
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00069918 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.752e-42
Identity = 77/181 (42.54%), Postives = 111/181 (61.33%), Query Frame = 2 
Query:  302 KMVLLGNEGVGKSALMVRFFTRRFIGEYDPTLESTHRRHLGIGNSTMIIDMKDTAGENDTQRREIDFVWGDVFVLVYSIIDRKSFQEIQKLRKVIEMMRGP-NTTFVVIGNKKDLSHLREVSKEEGKKWAEKHNALFFEISVAEDYHETQKVFNEIIRYIICQKAREESTTGKKRNHSYSS 841
            K+ + G  GVGKSAL+VRF T+RFI EYDPTLEST+R    I +  + +++ DTAG+ DT +RE    WG+ FVLVY I DR SF+E+  L+ +++ ++ P N T +++GNK DL H R+VS EEG+K A +    F+E S         ++F E+ R +     R     GK R  S ++
Sbjct:    8 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV----RRRRMVQGKTRRRSSTT 184
The following BLAST results are available for this feature:
BLAST of TCONS_00069918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RERG9.752e-4242.54Ras-related and estrogen-regulated growth inhibito... [more]
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