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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069891 ID=TCONS_00069891|Name=TCONS_00069891|organism=Clytia hemisphaerica|type=transcript|length=1319bp
GTTTTATATTCGAGGAAATATCAAAGCTGCgaagaaaaactttaaaacga
AGAGTTTAAAGACCGAGAAGAAATCGTCATAAACAAAATCTTACCGAGAA
TCGAACTCAAACGCTTTAAGATTTTATATTCGAGTAAAATCAACACCACG
AAGAAAAACTTGAACGCGATGatgaaattgaagatgaaacTTTCTGTTAT
ATTATTACTGTTAGTAGTGCAGGCAGCAGCCTTGCCTGTTAGACAAACCA
GATCCAACGATGATGGCTTTAACCGGAAAGAGTGTGGTGATGATGATAAA
TACCATATGAAAAGAATGCGAGAATTCGAACCAAAGTTAAATACAGTACG
TAAATCAATTGGTAAAGTCGCACTGGATGCTGCAATCGAAGGTCAATCAA
GACTTTGCAATCAATCTGCTTTATGGAAAGTTGAGTTGCCAGTATTCAGA
GCCGGCCGAAGTACAGCGGAATCAGCAATacaattgaaaatatattcagt
GATATTGAAAACGTATCAAGATAGTGCCATTGAAACATATCGGCTATCGA
AACAAAATTCTCAAACTCAGGAAGCGACAACAATTGATGAATATTACGGA
GCCATGTGGAATAAGTTGAATATTGATAATCTGAAAGAGAGAATCGACGT
GCGTTTGATTATTCAGTATCTCGATGAAACTTTTCTGAAAATCACCAGTT
ACTGTGGCCTCCACAGAGATGAAGTCAATGATGACAAGATCAAGGAAGCA
ACATCCAAAATAGTGAAGGATATAGAGCACGGATTCAAACGCCAACAAAA
TAAATGTAAACACATGAAGAACCATCTAGTACCTATCCTTAGACGGCAAG
CTGAGGACCTGCAACTCCTTTGGGATAATCTGATAGCTGAAGTCAGAAAC
AGGATTGATTTACATGACAGAGAACACCATAGTtgatttttaataacttt
tacCTAAAATtaacgtttatttatttttttctattatattTAAAATgcat
tatttatttatttatttatttagaaacaaaatagaaatatatttttgtac
CTTGTGAATACtgtaaatatttatatttatcttagaaaataatttatacC
TCGAAGGGTGTACATATATTTTATATAGACTagagattttttactttttt
ttattccttaaaatttatttattttatagtaCAATTTATacgaaaaagtt
aaaaatgaattttacaaatattttacaaatttaagAGAATTTAAAAGTAT
TAAAATCGTGGAAAGATATGAAACTagtatttaaaagaaaaatttaaaag
aaaaattatttataaatag Run BLAST on NCBI protein sequence of TCONS_00069891-protein >TCONS_00069891-protein ID=TCONS_00069891-protein|Name=TCONS_00069891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MMKLKMKLSVILLLLVVQAAALPVRQTRSNDDGFNRKECGDDDKYHMKRM
REFEPKLNTVRKSIGKVALDAAIEGQSRLCNQSALWKVELPVFRAGRSTA
ESAIQLKIYSVILKTYQDSAIETYRLSKQNSQTQEATTIDEYYGAMWNKL
NIDNLKERIDVRLIIQYLDETFLKITSYCGLHRDEVNDDKIKEATSKIVK
DIEHGFKRQQNKCKHMKNHLVPILRRQAEDLQLLWDNLIAEVRNRIDLHD
REHHS Run BLAST on NCBI transcript from alignment at scaffold_511:264524..267417+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069891 ID=TCONS_00069891|Name=TCONS_00069891|organism=Clytia hemisphaerica|type=transcript|length=2894bp|location=Sequence derived from alignment at scaffold_511:264524..267417+ (Clytia hemisphaerica)
GTTTTATATTCGAGGAAATATCAAAGCTGCgaagaaaaactttaaaacga
AGAGTTTAAAGACCGAGAAGAAATCGTCATAAACAAAATCTTACCGAGAA
TCGAACTCAAACGCTTTAAGATTTTATATTCGAGTAAAATCAACACCACG
AAGAAAAACTTGAACGCGATGatgaaattgaagatgaaacTTTCTGGTAA
GTTAAAAAGCAATACTATTCTGTTATTTAAACATTGGCAAATACTGAGAA
TTGACTGCAAATTTCGCATGCCCATTTTTACTTTGATCTGAACTCAAGTT
ATTATGAGACTAGAGGCGTGATCAAGTCGCTTGCCTCGATGACTCCAGAG
TTTTAAAGTCAATtaggacacccctgtctcacagccccggtggaactttt
ttcttcagtgaGGATAAAAATCCCTACTagtatcgaaatcccaatgggga
tagaaattttattacttttattgttccaaggttaaaaaatccagtgggga
tggttttgcatgcaatttttagacattcattttcgagtggggatgaaatc
aaagtcaattttccagtggggctgaaattccagggtattttcccaccagg
gaccaaaattttgcagaattttccAGTGATgatggggtcccagtgggtct
gtgacacaggggtgtattaggATAATTTGAAGGAGCTAATGGCCAAAATC
ATATAACGAAGCACTAAAGGAAATCAACTAGTTAAAAACTGTTTTCTTAC
ATGATagtatcaaaaaataaagagGGGTATTTTCAAATTGAGCATGATTA
ATAACAAAAGggtaaaatgaaaattcattcCATGGGAAATCACAGCTACA
ATTCAGAGTTTTTTACTGTAAAAGAGAGAAACAAAAGAATCATTGTTTAA
ATACGTAACTAcaataaagaaaacaaatttcGCTTGTCTCAGCAATTTTC
CTATCACTTCATGAGGAGATAAAAGGAGCTTCGAAAGGTTTCGAGCCATT
TATAAAAGAATCTGAACACAGTCATTACTATCAATCATCATGCATAATTT
ATTCGTTAGAGGTAAGACAGCCTCAGAGATTGACTGATTTTTACAAACTT
AATgtcttttttaattaaaattcatggaattgaGTATACAATCAATTGGA
TAaacttttgatgttttttctcCTTCAGTGAATCACTTCTAGTCGCTTGG
GTGTAagagtgtgtgtgtgtgtgattgttggcaaaattttgttggattct
ttttctgaaattatagtatgatttttatgaaattcaatcttttaatattt
attttctccttttttttagTTATATTATTACTGTTAGTAGTGCAGGCAGC
AGCCTTGCCTGTTAGACAAACCAGATCCAACGATGATGGCTTTAACCGGA
AAGAGTGTGGTGATGATGATAAATACCATATGAAAAGAATGCGAGAATTC
GAACCAAAGTTAAATACAGTACGTAAATCAATTGGTAAAGTCGCACTGGA
TGCTGCAATCGAAGGTCAATCAAGACTTTGCAATCAATCTGCTTTATGGA
AAGTTGAGTTGCCAGTATTCAGAGCCGGCCGAAGTACAGCGGTATGTATA
TTTCGATTTCATCACACGATCTAAACATTTTATTGAGGGCTTTACTAGGC
TTCAGGGTTTTACAAAGGCAATACAAGCCTCCAACTCTCCTATCAATATA
TAGAAAATCACCAGAAACATTTTATTGTCCTTCGGAGTCAACATTCTTAA
ACTTCTTTTCTTCATTCTACAGGAATCAGCAATacaattgaaaatatatt
cagtGATATTGAAAACGTATCAAGATAGTGCCATTGAAACATATCGGCTA
TCGAAACAAAATTCTCAAACTCAGGAAGCGACAACAATTGATGAATATTA
CGGAGCCATGTGGAATAAGTTGAATATTGATAATCTGAAAGAGAGAATCG
ACGTGCGTTTGATTATTCAGTATCTCGATGAAACTTTTCTGGTAAGTTTT
ATTCTTTCCTTTACAATGTTATTTCTGTCATTTCTTAAAAATGTCCTTTA
CTAAGAAACATGATCTCCAGGAAGTGGAATTCGATGCGTTGTGTTTGTTC
TATTTTGGAATGATTGCTTTAGAAGAAGGTTTATGCTCGTTGAAGGTGTA
TCGTACAAGAGGAAAACAAACCAGCTAAGATGACTTATTTCAAACTTTGC
CAAAACTTTCCAAGTacctatttcaaaatttataacaaattaatttcttt
atttCGTTACAGAAAATCACCAGTTACTGTGGCCTCCACAGAGATGAAGT
CAATGATGACAAGATCAAGGAAGCAACATCCAAAATAGTGAAGGATATAG
AGCACGGATTCAAACGCCAACAAAATAAATGTAAACACATGAAGAACCAT
CTAGTACCTATCCTTAGACGGCAAGCTGAGGACCTGCAACTCCTTTGGGA
TAATCTGATAGCTGAAGTCAGAAACAGGATTGATTTACATGACAGAGAAC
ACCATAGTtgatttttaataacttttacCTAAAATtaacgtttatttatt
tttttctattatattTAAAATgcattatttatttatttatttatttagaa
acaaaatagaaatatatttttgtacCTTGTGAATACtgtaaatatttata
tttatcttagaaaataatttatacCTCGAAGGGTGTACATATATTTTATA
TAGACTagagattttttacttttttttattccttaaaatttatttatttt
atagtaCAATTTATacgaaaaagttaaaaatgaattttacaaatatttta
caaatttaagAGAATTTAAAAGTATTAAAATCGTGGAAAGATATGAAACT
agtatttaaaagaaaaatttaaaagaaaaattatttataaatag Coding sequence (CDS) from alignment at scaffold_511:264524..267417+ >TCONS_00069891 ID=TCONS_00069891|Name=TCONS_00069891|organism=Clytia hemisphaerica|type=CDS|length=3072bp|location=Sequence derived from alignment at scaffold_511:264524..267417+ (Clytia hemisphaerica)
ATGatgaaattgaagatgaaacTTTCTGTTATATTATTACTGTTAGTAGT
GCAGGCAGCAGCCTTGCCTGTTAGACAAACCAGATCCAACGATGATGGCT
TTAACCGGAAAGAGTGTGGTGATGATGATAAATACCATATGAAAAGAATG
CGAGAATTCGAACCAAAGTTAAATACAGTACGTAAATCAATTGGTAAAGT
CGCACTGGATGCTGCAATCGAAGGTCAATCAAGACTTTGCAATCAATCTG
CTTTATGGAAAGTTGAGTTGCCAGTATTCAGAGCCGGCCGAAGTACAGCG
GAATCAGCAATacaattgaaaatatattcagtGATATTGAAAACGTATCA
AGATAGTGCCATTGAAACATATCGGCTATCGAAACAAAATTCTCAAACTC
AGGAAGCGACAACAATTGATGAATATTACGGAGCCATGTGGAATAAGTTG
AATATTGATAATCTGAAAGAGAGAATCGACGTGCGTTTGATTATTCAGTA
TCTCGATGAAACTTTTCTGAAAATCACCAGTTACTGTGGCCTCCACAGAG
ATGAAGTCAATGATGACAAGATCAAGGAAGCAACATCCAAAATAGTGAAG
GATATAGAGCACGGATTCAAACGCCAACAAAATAAATGTAAACACATGAA
GAACCATCTAGTACCTATCCTTAGACGGCAAGCTGAGGACCTGCAACTCC
TTTGGGATAATCTGATAGCTGAAGTCAGAAACAGGATTGATTTACATGAC
AGAGAACACCATAGTtgaATGatgaaattgaagatgaaacTTTCTGTTAT
ATTATTACTGTTAGTAGTGCAGGCAGCAGCCTTGCCTGTTAGACAAACCA
GATCCAACGATGATGGCTTTAACCGGAAAGAGTGTGGTGATGATGATAAA
TACCATATGAAAAGAATGCGAGAATTCGAACCAAAGTTAAATACAGTACG
TAAATCAATTGGTAAAGTCGCACTGGATGCTGCAATCGAAGGTCAATCAA
GACTTTGCAATCAATCTGCTTTATGGAAAGTTGAGTTGCCAGTATTCAGA
GCCGGCCGAAGTACAGCGGAATCAGCAATacaattgaaaatatattcagt
GATATTGAAAACGTATCAAGATAGTGCCATTGAAACATATCGGCTATCGA
AACAAAATTCTCAAACTCAGGAAGCGACAACAATTGATGAATATTACGGA
GCCATGTGGAATAAGTTGAATATTGATAATCTGAAAGAGAGAATCGACGT
GCGTTTGATTATTCAGTATCTCGATGAAACTTTTCTGAAAATCACCAGTT
ACTGTGGCCTCCACAGAGATGAAGTCAATGATGACAAGATCAAGGAAGCA
ACATCCAAAATAGTGAAGGATATAGAGCACGGATTCAAACGCCAACAAAA
TAAATGTAAACACATGAAGAACCATCTAGTACCTATCCTTAGACGGCAAG
CTGAGGACCTGCAACTCCTTTGGGATAATCTGATAGCTGAAGTCAGAAAC
AGGATTGATTTACATGACAGAGAACACCATAGTtgaATGatgaaattgaa
gatgaaacTTTCTGTTATATTATTACTGTTAGTAGTGCAGGCAGCAGCCT
TGCCTGTTAGACAAACCAGATCCAACGATGATGGCTTTAACCGGAAAGAG
TGTGGTGATGATGATAAATACCATATGAAAAGAATGCGAGAATTCGAACC
AAAGTTAAATACAGTACGTAAATCAATTGGTAAAGTCGCACTGGATGCTG
CAATCGAAGGTCAATCAAGACTTTGCAATCAATCTGCTTTATGGAAAGTT
GAGTTGCCAGTATTCAGAGCCGGCCGAAGTACAGCGGAATCAGCAATaca
attgaaaatatattcagtGATATTGAAAACGTATCAAGATAGTGCCATTG
AAACATATCGGCTATCGAAACAAAATTCTCAAACTCAGGAAGCGACAACA
ATTGATGAATATTACGGAGCCATGTGGAATAAGTTGAATATTGATAATCT
GAAAGAGAGAATCGACGTGCGTTTGATTATTCAGTATCTCGATGAAACTT
TTCTGAAAATCACCAGTTACTGTGGCCTCCACAGAGATGAAGTCAATGAT
GACAAGATCAAGGAAGCAACATCCAAAATAGTGAAGGATATAGAGCACGG
ATTCAAACGCCAACAAAATAAATGTAAACACATGAAGAACCATCTAGTAC
CTATCCTTAGACGGCAAGCTGAGGACCTGCAACTCCTTTGGGATAATCTG
ATAGCTGAAGTCAGAAACAGGATTGATTTACATGACAGAGAACACCATAG
TtgaATGatgaaattgaagatgaaacTTTCTGTTATATTATTACTGTTAG
TAGTGCAGGCAGCAGCCTTGCCTGTTAGACAAACCAGATCCAACGATGAT
GGCTTTAACCGGAAAGAGTGTGGTGATGATGATAAATACCATATGAAAAG
AATGCGAGAATTCGAACCAAAGTTAAATACAGTACGTAAATCAATTGGTA
AAGTCGCACTGGATGCTGCAATCGAAGGTCAATCAAGACTTTGCAATCAA
TCTGCTTTATGGAAAGTTGAGTTGCCAGTATTCAGAGCCGGCCGAAGTAC
AGCGGAATCAGCAATacaattgaaaatatattcagtGATATTGAAAACGT
ATCAAGATAGTGCCATTGAAACATATCGGCTATCGAAACAAAATTCTCAA
ACTCAGGAAGCGACAACAATTGATGAATATTACGGAGCCATGTGGAATAA
GTTGAATATTGATAATCTGAAAGAGAGAATCGACGTGCGTTTGATTATTC
AGTATCTCGATGAAACTTTTCTGAAAATCACCAGTTACTGTGGCCTCCAC
AGAGATGAAGTCAATGATGACAAGATCAAGGAAGCAACATCCAAAATAGT
GAAGGATATAGAGCACGGATTCAAACGCCAACAAAATAAATGTAAACACA
TGAAGAACCATCTAGTACCTATCCTTAGACGGCAAGCTGAGGACCTGCAA
CTCCTTTGGGATAATCTGATAGCTGAAGTCAGAAACAGGATTGATTTACA
TGACAGAGAACACCATAGTtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069891-exon-scaffold_511-1491911889:264524..264719 | TCONS_00069891-exon-scaffold_511-1491911889:264524..264719 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1510915933:264524..264719 | TCONS_00069891-exon-scaffold_511-1510915933:264524..264719 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1575043694:264524..264719 | TCONS_00069891-exon-scaffold_511-1575043694:264524..264719 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1491911889:265843..266114 | TCONS_00069891-exon-scaffold_511-1491911889:265843..266114 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1510915933:265843..266114 | TCONS_00069891-exon-scaffold_511-1510915933:265843..266114 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1575043694:265843..266114 | TCONS_00069891-exon-scaffold_511-1575043694:265843..266114 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1491911889:266296..266514 | TCONS_00069891-exon-scaffold_511-1491911889:266296..266514 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1510915933:266296..266514 | TCONS_00069891-exon-scaffold_511-1510915933:266296..266514 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1575043694:266296..266514 | TCONS_00069891-exon-scaffold_511-1575043694:266296..266514 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1491911889:266786..267417 | TCONS_00069891-exon-scaffold_511-1491911889:266786..267417 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1510915933:266786..267417 | TCONS_00069891-exon-scaffold_511-1510915933:266786..267417 | Clytia hemisphaerica | exon |
| TCONS_00069891-exon-scaffold_511-1575043694:266786..267417 | TCONS_00069891-exon-scaffold_511-1575043694:266786..267417 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:264524..267417 + |
Blast
The following BLAST results are available for this feature:
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