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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069885 ID=TCONS_00069885|Name=TCONS_00069885|organism=Clytia hemisphaerica|type=transcript|length=684bp
ttggaaagcacccagagcctcttgggaacttgtttttgatcgatattgaa
gtattttgcaaatattgcagaagtctacaaaccttttgtccagcattgtg
gGAGTCTCACGTGTTTAGCTCTTTTCCTACAGGACATTCAAGTAAAGATG
GAAAATCTCTTTGAAATGTGTGAATCTACCATCAATATCTTTCCGAGTTT
GCACCAGGAACCACTCATTAAGAATTTCCTGAATGATATTGAAATGGATT
TGAATTCAAATATTATTCGTGATGAGTTTGGTGACGTCACTGATTGGCCG
AGGAAGCAGATTCTTTTTGGCAATGATGAAATGTACCAGGGTTGTTTGGT
GGACATCAatgaaaaaattgaccaaaGCTCCAACATGGTGAACAATTATA
TCAAAcaaTTTGAGATATTTCATATGATGATTTCAACGGCCAATTTCGAA
GAATTGGAAAGGTCTTTGCAAAAAGAGTGGTCTGTCGATCAATTTGATGC
CGTTCTTCAACAATTCACTATACAGGTCAATGCAATGGAGAGTATGCCGT
TGTCCAATAGACGTGGTTTATTCACAGTTGAAAGTTTTCAATACAAAGAA
CATTGTTTACCTTACCCGAAAAGCATTTTGCAGCTGGTCAACAAACATTT
GGCGTCTATTGCGAACGAGAAGAATGAAGCCTTC Run BLAST on NCBI protein sequence of TCONS_00069885-protein >TCONS_00069885-protein ID=TCONS_00069885-protein|Name=TCONS_00069885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MENLFEMCESTINIFPSLHQEPLIKNFLNDIEMDLNSNIIRDEFGDVTDW
PRKQILFGNDEMYQGCLVDINEKIDQSSNMVNNYIKQFEIFHMMISTANF
EELERSLQKEWSVDQFDAVLQQFTIQVNAMESMPLSNRRGLFTVESFQYK
EHCLPYPKSILQLVNKHLASIANEKNEAF Run BLAST on NCBI transcript from alignment at scaffold_511:193025..194240+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069885 ID=TCONS_00069885|Name=TCONS_00069885|organism=Clytia hemisphaerica|type=transcript|length=1216bp|location=Sequence derived from alignment at scaffold_511:193025..194240+ (Clytia hemisphaerica)
ttggaaagcacccagagcctcttgggaacttgtttttgatcgatattgaa
gtattttgcaaatattgcagaagtctacaaaccttttgtccagcattgtg
gGAGTCTCACGTGTTTAGCTCTTTTCCTACAGGACATTCAAGTAAAGATG
GAAAATCTCTTTGAAATGTGTGAATCTACCATCAATATCTTTCCGAGTTT
GCACCAGGAACCACTCATTAAGAATTTCCTGAATGATATTGAAATGGATT
TGAATTCAAATATTATTCGTGATGAGTTTGGTGACGTCACTGATTGGCCG
AGGAAGCAGATTCTTTTTGGCAATGATGAAATGTACCAGGGTTGTTTGGT
GGACATCAatgaaaaaattgaccaaaGCTCCAACATGGTGAACAATTATA
TCAAAGTGAGTCTATATCTTAATTTATAACATCAGAACTTAGTGTATAGT
ATAATGAAAACACTATTTTTCAatctatttgaaatttttataatttttgt
tagCTCTTATAACCCACTGAAAATGTATGTAAAAGCTTGACCAAGCTCAC
TTCAGTTTAATCTGTGGTATAAAGACATAGATTTAAAATTTAAGAACGTA
TAACGTTGTTCAAGttgaataattttaattttctttttcagcaaTTTGAG
ATATTTCATATGATGATTTCAACGGCCAATTTCGAAGAATTGGAAAGGTC
TTTGCAAAAAGAGTGGTCTGTCGATCAATTTGATGCCGTTCTTCAACAAT
TCACTATACAGGTAAGTTTGCCACACCCTAGTTAGTAGGGAAATTGTTGG
TTAATCGGGGGAACAAGATTCACGCAATCAAGAAGGGTACTTTTTCACGT
ATGCAAcgaaaaaagcccattcacgcatttacGCAAGCCATCACCACTAG
GGGTTTTATAAAATGTTGACACTACTTGGGGAATCCAAGCTTATTAAAAC
ATACACTGTGAAGGGATTTGAGTGGAATAATAAGGCCCCTAACGTTACGC
TTCTTATCTTCATGTAATGGTTAGATGAGCAAAATCTTTGACTGTCCATC
TTTATAGGTCAATGCAATGGAGAGTATGCCGTTGTCCAATAGACGTGGTT
TATTCACAGTTGAAAGTTTTCAATACAAAGAACATTGTTTACCTTACCCG
AAAAGCATTTTGCAGCTGGTCAACAAACATTTGGCGTCTATTGCGAACGA
GAAGAATGAAGCCTTC Coding sequence (CDS) from alignment at scaffold_511:193025..194240+ >TCONS_00069885 ID=TCONS_00069885|Name=TCONS_00069885|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_511:193025..194240+ (Clytia hemisphaerica)
ATGGAAAATCTCTTTGAAATGTGTGAATCTACCATCAATATCTTTCCGAG
TTTGCACCAGGAACCACTCATTAAGAATTTCCTGAATGATATTGAAATGG
ATTTGAATTCAAATATTATTCGTGATGAGTTTGGTGACGTCACTGATTGG
CCGAGGAAGCAGATTCTTTTTGGCAATGATGAAATGTACCAGGGTTGTTT
GGTGGACATCAatgaaaaaattgaccaaaGCTCCAACATGGTGAACAATT
ATATCAAAcaaTTTGAGATATTTCATATGATGATTTCAACGGCCAATTTC
GAAGAATTGGAAAGGTCTTTGCAAAAAGAGTGGTCTGTCGATCAATTTGA
TGCCGTTCTTCAACAATTCACTATACAGGTCAATGCAATGGAGAGTATGC
CGTTGTCCAATAGACGTGGTTTATTCACAGTTGAAAGTTTTCAATACAAA
GAACATTGTTTACCTTACCCGAAAAGCATTTTGCAGCTGGTCAACAAACA
TTTGGCGTCTATTGCGAACGAGAAGAATGAAGCCTTCATGGAAAATCTCT
TTGAAATGTGTGAATCTACCATCAATATCTTTCCGAGTTTGCACCAGGAA
CCACTCATTAAGAATTTCCTGAATGATATTGAAATGGATTTGAATTCAAA
TATTATTCGTGATGAGTTTGGTGACGTCACTGATTGGCCGAGGAAGCAGA
TTCTTTTTGGCAATGATGAAATGTACCAGGGTTGTTTGGTGGACATCAat
gaaaaaattgaccaaaGCTCCAACATGGTGAACAATTATATCAAAcaaTT
TGAGATATTTCATATGATGATTTCAACGGCCAATTTCGAAGAATTGGAAA
GGTCTTTGCAAAAAGAGTGGTCTGTCGATCAATTTGATGCCGTTCTTCAA
CAATTCACTATACAGGTCAATGCAATGGAGAGTATGCCGTTGTCCAATAG
ACGTGGTTTATTCACAGTTGAAAGTTTTCAATACAAAGAACATTGTTTAC
CTTACCCGAAAAGCATTTTGCAGCTGGTCAACAAACATTTGGCGTCTATT
GCGAACGAGAAGAATGAAGCCTTCATGGAAAATCTCTTTGAAATGTGTGA
ATCTACCATCAATATCTTTCCGAGTTTGCACCAGGAACCACTCATTAAGA
ATTTCCTGAATGATATTGAAATGGATTTGAATTCAAATATTATTCGTGAT
GAGTTTGGTGACGTCACTGATTGGCCGAGGAAGCAGATTCTTTTTGGCAA
TGATGAAATGTACCAGGGTTGTTTGGTGGACATCAatgaaaaaattgacc
aaaGCTCCAACATGGTGAACAATTATATCAAAcaaTTTGAGATATTTCAT
ATGATGATTTCAACGGCCAATTTCGAAGAATTGGAAAGGTCTTTGCAAAA
AGAGTGGTCTGTCGATCAATTTGATGCCGTTCTTCAACAATTCACTATAC
AGGTCAATGCAATGGAGAGTATGCCGTTGTCCAATAGACGTGGTTTATTC
ACAGTTGAAAGTTTTCAATACAAAGAACATTGTTTACCTTACCCGAAAAG
CATTTTGCAGCTGGTCAACAAACATTTGGCGTCTATTGCGAACGAGAAGA
ATGAAGCCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069885-exon-scaffold_511-1491911889:193025..193429 | TCONS_00069885-exon-scaffold_511-1491911889:193025..193429 | Clytia hemisphaerica | exon |
| TCONS_00069885-exon-scaffold_511-1510915933:193025..193429 | TCONS_00069885-exon-scaffold_511-1510915933:193025..193429 | Clytia hemisphaerica | exon |
| TCONS_00069885-exon-scaffold_511-1575043694:193025..193429 | TCONS_00069885-exon-scaffold_511-1575043694:193025..193429 | Clytia hemisphaerica | exon |
| TCONS_00069885-exon-scaffold_511-1491911889:193666..193785 | TCONS_00069885-exon-scaffold_511-1491911889:193666..193785 | Clytia hemisphaerica | exon |
| TCONS_00069885-exon-scaffold_511-1510915933:193666..193785 | TCONS_00069885-exon-scaffold_511-1510915933:193666..193785 | Clytia hemisphaerica | exon |
| TCONS_00069885-exon-scaffold_511-1575043694:193666..193785 | TCONS_00069885-exon-scaffold_511-1575043694:193666..193785 | Clytia hemisphaerica | exon |
| TCONS_00069885-exon-scaffold_511-1491911889:194082..194240 | TCONS_00069885-exon-scaffold_511-1491911889:194082..194240 | Clytia hemisphaerica | exon |
| TCONS_00069885-exon-scaffold_511-1510915933:194082..194240 | TCONS_00069885-exon-scaffold_511-1510915933:194082..194240 | Clytia hemisphaerica | exon |
| TCONS_00069885-exon-scaffold_511-1575043694:194082..194240 | TCONS_00069885-exon-scaffold_511-1575043694:194082..194240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:193025..194240 + |
Blast
The following BLAST results are available for this feature:
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