TCONS_00069881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069881
Unique NameTCONS_00069881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length955

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069881 ID=TCONS_00069881|Name=TCONS_00069881|organism=Clytia hemisphaerica|type=transcript|length=955bp
ATTTCAATCAACTCTTAAAATAACAAAGCCAGAGTCCCAAAGCGATGCAT
TAGTGGCGATACAAGTGATTACCAAGGAATTCCCAATGGAAGATCTTTAG
CTCtttaaaatgagataaaatgatGCACTTGGCACAAACGCATTAAAGAA
ATTTGAGTTGTTTAAAATCGTTCCAGAAAACACAGCAAAGATGAAACTTG
CAATTTCACTTGTTGGACTATTCGTCCTCGGTTGTGTTGCTACACCTTTA
GCAATTCTTGAGGAAAATGATCCAATACTGATTAAGGGTGAACATATCCT
TCCTGATAGACTTGAAAACGATTTATCAGAAATTTACGAAGATATCATTG
ATAAAAGTTTTGTCAGACCTGCATCTACTCGCCGAGcaatgaaatcaaaa
agaagGATTTCCACTAACAAACCATCGACCGGTGTTCcaagaaaaatgtc
agaaaaacaGACTACTGGAGGCGTTTCTGAAACTACCACGCCATCACGCC
CCACTGAATCCACTCTACCAACAACTAGCGCTTCCATTCAAGAAGAGTCG
ACCCCTTCTGTAGAATCCACTGAAGCTATCATTGAACAAACAACTACACC
GTTTATCCAAAGTGAAAGTACTGAGAAACCCAAACCAAGTATTGTAAGGG
TACTCAAAGGATTGATCAAGAAATTGCAAAACTTACACAATCGGAATGTT
GCATTATGGGAAATTGTTGACACTATTCAGAATCGAATGGATCacgtttt
caaaaatgaatCGAACGAATGAACAGCCATTTTGGATTTTACCAATGCTT
ATGttatatttaatttattttgacatttaGAACAGTTCAGATTTCATGTA
GATATTTATTCGAAATAATATAACTTTCCATTGAAACGTTGTCTTCAGAA
ATCTTGAAACCTAAAACGAGaaacaatgttttgaaaaagattatttcaag
tagaa
Run BLAST on NCBI

protein sequence of TCONS_00069881-protein

>TCONS_00069881-protein ID=TCONS_00069881-protein|Name=TCONS_00069881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MKLAISLVGLFVLGCVATPLAILEENDPILIKGEHILPDRLENDLSEIYE
DIIDKSFVRPASTRRAMKSKRRISTNKPSTGVPRKMSEKQTTGGVSETTT
PSRPTESTLPTTSASIQEESTPSVESTEAIIEQTTTPFIQSESTEKPKPS
IVRVLKGLIKKLQNLHNRNVALWEIVDTIQNRMDHVFKNESNE
Run BLAST on NCBI

transcript from alignment at scaffold_511:165067..167688+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069881 ID=TCONS_00069881|Name=TCONS_00069881|organism=Clytia hemisphaerica|type=transcript|length=2622bp|location=Sequence derived from alignment at scaffold_511:165067..167688+ (Clytia hemisphaerica)
ATTTCAATCAACTCTTAAAATAACAAAGCCAGAGTCCCAAAGCGATGCAT
TAGTGGCGATACAAGTGATTACCAAGGAATTCCCAATGGAAGATCTTTAG
CTCtttaaaatgagataaaatgatGCACTTGGCACAAACGCATTAAAGAA
ATTTGAGTTGTTTAAAATCGTTCCAGAAAACACAGCAAAGATGAAACTTG
CAATTTCACTTGTTGGACTATTCGTCCTCGGTAGGATTTTTCAACAATCT
TCTTTACCTTTTTCATCAGCATTACTtcagcaaattttttatttaaagaa
aGAAACTTCCTGTTCGTATCATTTTCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCTATTTCAACACAATCACGCTACTTTGTTTTCATTCCTGATC
TTTTTTAGTGTAACCCGGTCCTTACAAATTCGAAATGGCTTATTCGCCAC
ATCATGTATATTTTCATACATCCCTTTAAAGCTTTAGCGTGGTGTACCGA
AAACAATGACAATCTGATTGTACGTTACTTTCAGCCAAATGTTGATTTTC
TCCAAAACTAGTCCCTTGTGAAATAATTTCAATCAACTCTTAAAATAACA
AAGCCAGAGTCCCAAAGCGATGCATTAGTGGCGATACAAGTGATTACCAA
GGAATTCCCAATGGAAGATCTTTAGCTCtttaaaatgagataaaatgatG
CACTTGGCACAAACGCATTAAAGAAATTTGAGTTGTTTAAAATCGTTCCA
GAAAACACAGCAAAGATGAAACTTGCAATTTCACTTGTTGGACTATTCGT
CCTCGGTAGGATTTTTCAACAATCTTCTTTACCTTTTTCATCAGCATTAC
TtcagcaaattttttatttaaagaaaGAAACTTCCTGTTCGTATCATTTT
CTTCCAATGTAGTCTCTTTAATTCAAACATCTATAAACTGAATGTCTCCT
TGATTCGAAAAAGTTTTATAGTCCCTTCAGTCAATGTCTTGTTACCCCAc
aactgaaatttccttaactcaaacaaatttacGTCCCCCGTGGACGTTCG
AGCTATGGAGACTCCCCCTGTTACGAATTTTTCTAAGCATCTTTAATGAG
TTATACACACTTTGGTGAAAGTTACtgttcgatttatatatcttcatttt
ctttactGTACAGGTTGTGTTGCTACACCTTTAGCAATTCTTGAGGAAAA
TGATCCAATACTGATTAAGGGTGAACNTCCTTgactcgaaaaagttttat
aGTCCCTTCAGTCAATGTCTTGTTACCCCAcaactgaaatttccttaact
caaacaaatttacGTCCCCCGTGGACGTTCGAGCTATGGAGACTCCCCCT
GTTACGAATTTTTCTAAGCATCTTTAATGAGTTATACACACTTTGGTGAA
AGTTACtgttcgatttatatatcttcattttctttactGTACAGGTTGTG
TTGCTACACCTTTAGCAATTCTTGAGGAAAATGATCCAATACTGATTAAG
GGTGAACATATCCTTCCTGATAGACTTGAAAACGATTTATCAGAAATTTA
CGAAGATATCATTGATAAAAGTTTTGTCAGACCTGCATCTACTCGCCGAG
caatgaaatcaaaaagaagGATTTCCACTAACAAACCATCGACCGGTGTT
CcaagaaaaatgtcagaaaaacaGACTACTGGAGGCGTTTCTGAAACTAC
CACGCCATCACGCCCCACTGAATCCACTCTACCAACAACTAGCGCTTCCA
TTCAAGAAGAGTCGACCCCTTCTGTAGAATCCACTGAAGCTATCATTGAA
CAAACAACTACACCGTTTATCCAAAGTGAAAGTACTGAGAAACCCAAACC
AAGTATTGTAAGGGTACTCAAAGGTAAGATTTTTTGCTGCTTTTGTCTCG
CAATTCCTTTAGAAGCATTGCATTTTGGATTCTGGCAAAGTTATCTTAAA
CATAAATTTTCGAGAACACCTGAATTAGGACTTGAATTCGTTCTTATCGA
AAACATCTTTCAGTCTGATGGTAATAAGAGGTTAGTAAGGATGTTTTTGA
ACCTTTAAAATTCAATATCTGGAGTTGTCATTTCGCGATCCAGTTTAGCC
GGTATTTCACCAGATTATAGTCTGGATTGTTTTTCAGTGAAACAGGGACG
ATATATTCACATCTCTAATATTTCAGGATTGATCAAGAAATTGCAAAACT
TACACAATCGGAATGTTGCATTATGGGAAATTGTTGACACTATTCAGAAT
CGAATGGATCacgttttcaaaaatgaatCGAACGAATGAACAGCCATTTT
GGATTTTACCAATGCTTATGttatatttaatttattttgacatttaGAAC
AGTTCAGATTTCATGTAGATATTTATTCGAAATAATATAACTTTCCATTG
AAACGTTGTCTTCAGAAATCTTGAAACCTAAAACGAGaaacaatgttttg
aaaaagattatttcaagtagaa

Coding sequence (CDS) from alignment at scaffold_511:165067..167688+

>TCONS_00069881 ID=TCONS_00069881|Name=TCONS_00069881|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_511:165067..167688+ (Clytia hemisphaerica)
ATGAAACTTGCAATTTCACTTGTTGGACTATTCGTCCTCGGTTGTGTTGC
TACACCTTTAGCAATTCTTGAGGAAAATGATCCAATACTGATTAAGGGTG
AACATATCCTTCCTGATAGACTTGAAAACGATTTATCAGAAATTTACGAA
GATATCATTGATAAAAGTTTTGTCAGACCTGCATCTACTCGCCGAGcaat
gaaatcaaaaagaagGATTTCCACTAACAAACCATCGACCGGTGTTCcaa
gaaaaatgtcagaaaaacaGACTACTGGAGGCGTTTCTGAAACTACCACG
CCATCACGCCCCACTGAATCCACTCTACCAACAACTAGCGCTTCCATTCA
AGAAGAGTCGACCCCTTCTGTAGAATCCACTGAAGCTATCATTGAACAAA
CAACTACACCGTTTATCCAAAGTGAAAGTACTGAGAAACCCAAACCAAGT
ATTGTAAGGGTACTCAAAGGATTGATCAAGAAATTGCAAAACTTACACAA
TCGGAATGTTGCATTATGGGAAATTGTTGACACTATTCAGAATCGAATGG
ATCacgttttcaaaaatgaatCGAACGAATGAATGAAACTTGCAATTTCA
CTTGTTGGACTATTCGTCCTCGGTTGTGTTGCTACACCTTTAGCAATTCT
TGAGGAAAATGATCCAATACTGATTAAGGGTGAACATATCCTTCCTGATA
GACTTGAAAACGATTTATCAGAAATTTACGAAGATATCATTGATAAAAGT
TTTGTCAGACCTGCATCTACTCGCCGAGcaatgaaatcaaaaagaagGAT
TTCCACTAACAAACCATCGACCGGTGTTCcaagaaaaatgtcagaaaaac
aGACTACTGGAGGCGTTTCTGAAACTACCACGCCATCACGCCCCACTGAA
TCCACTCTACCAACAACTAGCGCTTCCATTCAAGAAGAGTCGACCCCTTC
TGTAGAATCCACTGAAGCTATCATTGAACAAACAACTACACCGTTTATCC
AAAGTGAAAGTACTGAGAAACCCAAACCAAGTATTGTAAGGGTACTCAAA
GGATTGATCAAGAAATTGCAAAACTTACACAATCGGAATGTTGCATTATG
GGAAATTGTTGACACTATTCAGAATCGAATGGATCacgttttcaaaaatg
aatCGAACGAATGAATGAAACTTGCAATTTCACTTGTTGGACTATTCGTC
CTCGGTTGTGTTGCTACACCTTTAGCAATTCTTGAGGAAAATGATCCAAT
ACTGATTAAGGGTGAACATATCCTTCCTGATAGACTTGAAAACGATTTAT
CAGAAATTTACGAAGATATCATTGATAAAAGTTTTGTCAGACCTGCATCT
ACTCGCCGAGcaatgaaatcaaaaagaagGATTTCCACTAACAAACCATC
GACCGGTGTTCcaagaaaaatgtcagaaaaacaGACTACTGGAGGCGTTT
CTGAAACTACCACGCCATCACGCCCCACTGAATCCACTCTACCAACAACT
AGCGCTTCCATTCAAGAAGAGTCGACCCCTTCTGTAGAATCCACTGAAGC
TATCATTGAACAAACAACTACACCGTTTATCCAAAGTGAAAGTACTGAGA
AACCCAAACCAAGTATTGTAAGGGTACTCAAAGGATTGATCAAGAAATTG
CAAAACTTACACAATCGGAATGTTGCATTATGGGAAATTGTTGACACTAT
TCAGAATCGAATGGATCacgttttcaaaaatgaatCGAACGAATGAATGA
AACTTGCAATTTCACTTGTTGGACTATTCGTCCTCGGTTGTGTTGCTACA
CCTTTAGCAATTCTTGAGGAAAATGATCCAATACTGATTAAGGGTGAACA
TATCCTTCCTGATAGACTTGAAAACGATTTATCAGAAATTTACGAAGATA
TCATTGATAAAAGTTTTGTCAGACCTGCATCTACTCGCCGAGcaatgaaa
tcaaaaagaagGATTTCCACTAACAAACCATCGACCGGTGTTCcaagaaa
aatgtcagaaaaacaGACTACTGGAGGCGTTTCTGAAACTACCACGCCAT
CACGCCCCACTGAATCCACTCTACCAACAACTAGCGCTTCCATTCAAGAA
GAGTCGACCCCTTCTGTAGAATCCACTGAAGCTATCATTGAACAAACAAC
TACACCGTTTATCCAAAGTGAAAGTACTGAGAAACCCAAACCAAGTATTG
TAAGGGTACTCAAAGGATTGATCAAGAAATTGCAAAACTTACACAATCGG
AATGTTGCATTATGGGAAATTGTTGACACTATTCAGAATCGAATGGATCa
cgttttcaaaaatgaatCGAACGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043521XLOC_043521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069881-exon-scaffold_511-1491911889:165067..165296TCONS_00069881-exon-scaffold_511-1491911889:165067..165296Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1510915933:165067..165296TCONS_00069881-exon-scaffold_511-1510915933:165067..165296Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1575043694:165067..165296TCONS_00069881-exon-scaffold_511-1575043694:165067..165296Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1491911889:166380..166442TCONS_00069881-exon-scaffold_511-1491911889:166380..166442Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1510915933:166380..166442TCONS_00069881-exon-scaffold_511-1510915933:166380..166442Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1575043694:166380..166442TCONS_00069881-exon-scaffold_511-1575043694:166380..166442Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1491911889:166724..167089TCONS_00069881-exon-scaffold_511-1491911889:166724..167089Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1510915933:166724..167089TCONS_00069881-exon-scaffold_511-1510915933:166724..167089Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1575043694:166724..167089TCONS_00069881-exon-scaffold_511-1575043694:166724..167089Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1491911889:167393..167688TCONS_00069881-exon-scaffold_511-1491911889:167393..167688Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1510915933:167393..167688TCONS_00069881-exon-scaffold_511-1510915933:167393..167688Clytia hemisphaericaexon
TCONS_00069881-exon-scaffold_511-1575043694:167393..167688TCONS_00069881-exon-scaffold_511-1575043694:167393..167688Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069881-proteinTCONS_00069881-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:165067..167688 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
577.397	586.75	167.856	106.71	6.98748	5.65776	1.30437	1.58223	0.240454	1.20577	0.224849	0.0739034	0.010543	0.010949	0	0.00966003	0	0	0.033703	0.0705355	0.842987	0.540081	198.504	158.3	0.13616	0	9.80283	15.5194	67.441	82.8734
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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