TCONS_00069879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069879
Unique NameTCONS_00069879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1964

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069879 ID=TCONS_00069879|Name=TCONS_00069879|organism=Clytia hemisphaerica|type=transcript|length=1964bp
GGAACGCGCCGCAGATGgtCTATTAAGTTATGGAATTAGAAGAACTGATG
ACGAACCGCGCTTTATTAGAAAAGATGTCTGAAAATGACATCCATACGCC
GTACAGAAAACATCCATCTAAGCACGTCATTATACAAGAGAATCACTCCA
AACCGAAAGAAAAACCGAAAGAAATTAGAATCGAATATAAGAACTCACAT
AATAACATTTCATTTACAACCGCTACTGACAGATCGATCACGCCTCCGCC
ACCGCCCCTCGTCTTGGAAGGCTATGGGTGTAAATGTCCAAATAAACTga
aaaaagtgatgaaaattTTATGGGTAgtgttgatatttttatatatCTTT
GGTATGCCGATCGTTCTTGTTCACATGCATACTAAACTTACAGAGACTGA
AGATAGACTTTTATCTCTCGAAACTCGATTCAACCAATACATCGGGTTGA
AGGTTGACAGTGACGGTAGTGTGAATATCAAAGCGTCCAAACATTACGGA
GGTAACAGAGTAGAGACACATAAGACTAATGAGTATACCGAAGAGAATTT
TAAGACTTTGCAAGATCAAATCGACACGGTGGATCGGTTGGTGCATGAAC
ACAAAAACAGGATATCTTTCATTGAGACCTTTCAAGTGTGGTTGAATGGA
ACACAAAATGGTACCGGAGATTCGAAAGACAACAAAAATTGTTTCTGTTA
TTCCAATCTTGCAAgcCAAGCAAAAAAGTTAGTTTCACCAAGTCCTTCAT
CAGACAAATGTCAATGTAAAAACGTAGCCATTGGCCTTCCAGGGCCACCA
GGACCCCGAGGGCCGCGTGGACCTCCAGGCAAAGATGCTGTAATAGATAA
TAAGTTATTAGATCAATACCGGGGATTGCCAGGTCATCAAGGCACCAAAG
GTTCGGCAGGAGAACAAGGAGGTATTGGCACACCTGGCGAAGATGGCGGT
GGCTCGTGTAAGAATTGTATTCAGAAGACCAGTACCACTTATACTCATTG
GGGAAAGAAATCATGCGAAAGCACAAATTTAAATGCAACTACTGTTTATC
AAGGTTACGTTGCTGGTTCGTTCCACACTCAAGACGGAGGCGGATCAAAC
TATCTATGTCTTCCGGAAAAGCCGAAATACGGAAAATACGATCAAGCCTT
TAACCGAGGAAGCCGTGCCTTCATCTACGGCGTTGAGTTTGAATTAGGTG
ATTCAAATGTATTTGATGATTCAGATAAGCCTGGTCATTTTAATGCTTTC
TGCTCAGTATGTAAAGTTGAAGAGAAAAGTAGTACCATAATGGTACCTGC
CACTACGAGCTGCCCTGATGGATGGAACCGAGAGTATCAAGGATACCTTA
TGGCACAAAAGCGATATCTCAAAAGGACTGAATATATATGCGTTGATCGC
AAACCAGATTTGAGCTCCAAGACAGCTAAATGGGACAAAGGAGGCTTTTT
ACATTTCGTTGAAACGAGATGTGGTGCGTTGCCATGTCGATCAAATCAGT
ATGTTGAATATCGTGAACTACCCTGCGCTGTCTGTTCAAGTTAGTAAGGA
AGTATAGGTTTTGATGGAGAGCTCTAGACAACAGATTGGTCCACTTCAAT
ACTTTTAGCTGTTTGTATTGAATGGTAAACTATGACTGTTACAACACTTC
ATCTTCATGCAATCGATGTCTAATCCAGTTCGGTCACGCTCGATCATGAC
ATGAAATGATCCACAGAGTctggaatttcaaaattcttataGTTTTAGAG
GTTTATTTGGCACAGCCAAGTAATAGCAGCTGCtgatattcgaaaatatt
gacGAATGTATATAAAAATTGTGATTAATAATTTCTTGGTTTGTAAATAG
TGTATAATTAATTGGAACTTTTATTTATCATAAGATATTTTAACCtcctt
tgaaaaattaaagaaagagACTTAAATCTAAACAATAATTTATTTCTAGA
TGACGGCGTCTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_511:153971..158516+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069879 ID=TCONS_00069879|Name=TCONS_00069879|organism=Clytia hemisphaerica|type=transcript|length=4546bp|location=Sequence derived from alignment at scaffold_511:153971..158516+ (Clytia hemisphaerica)
GGAACGCGCCGCAGATGGTTAGTATTTTTCTCTGTCTAAGATCCTGACTG
ACTGGAGAGTACGGGAAATCAATGTTCGATTATATGTTTTGAAACTGCGG
CTTGTTTATCGTTAAAAAACGAAGATACGCAAGAGAGTGAAAATTTACAG
AATCGATTATAGTAGAGAATGGTATAGATTTGCTTCTACTGAGTGAAAAG
AGTTTAGATTTATCTTTGAAAATGAATGAGGTTTGGGTCTGATCTTCTTC
GTACGGAACGGCCGTGTTTCTAGCTGAATCTACTGATGAACTTTGCGGGA
TCTCTTTTTTTGGAGAAATATGCGTTGGAAAGTTACTGGTTTTATTCCTG
GTTTAATAAAACAAACATCTTTATTATATTGCAAAGAGATAATAGCTGGC
TCTTTTTGCAAAAACCGTCCATAATGACTGCCAATTGACATGTTGTCTCT
AATGAATAATTACATAGTGCCTTTGAGAAGAGAAAGAAACCTaaggaaaa
tatttcttaaaatgtGTGGGAAGTATTTGGCTTGCTTTCTAGGGCTAATA
TCGTCCCTTAAAACCTCTCTTTCTCGTCTATACGTCAGTTGAATACTGCT
TTGGTTCTTCACGTACGGATCATTAAAGGTTCGTAGAGGCTCTGTATTTG
TGCCAAAGTTGCCAAATGCATTAGAATCTTTGATATTCTTGCCTTGGAGC
GTAAGTGAAAATCATCGTCGCGTTTTGCAATATACTTTTGTGTTCATAAA
ATTCAGTTAATTAATTTTATGCAATACGTGATTTGATATGCGGTGTCCAG
TACGATATCTTGTGATACCTTGTTATCAGCTCAAATGAAGTCTTGAAGTG
ACATGTTAATTCCATCAACAGTTTTTCTCACCGTCGCGCTAATAAACTCA
GCAAAATGCATATATTCTACGTGTCTATCGCACATTGCTTTTTTTATCAT
ACCTAAAATTTCGAGAGGAATTTTGTTGGATCtggatttgtttgtttgtt
ttcatacaaaaacattTTCGATTCCACTATGAGAGCTAACAAATATACGT
TTTGCAATACGTGTTACCTTACCATACACAATTTAACcaattcatttttg
ttttttcaggtCTATTAAGTTATGGAATTAGAAGAACTGATGACGAACCG
CGCTTTATTAGAAAAGATGTCTGAAAATGACATCCATACGCCGTACAGAA
AACATCCATCTAAGCACGTCATTATACAAGAGAATCACTCCAAACCGAAA
GAAAAACCGAAAGAAATTAGAATCGAATATAAGAACTCACATAATAACAT
TTCATTTACAACCGCTACTGACAGATCGATCACGCCTCCGCCACCGCCCC
TCGTCTTGGAAGGCTATGGGTGTAAATGTCCAAATAAACTgaaaaaagtg
atgaaaattTTATGGGTAgtgttgatatttttatatatCTTTGGTATGCC
GATCGTTCTTGTTCACATGCATACTAAACTTACAGAGACTGAAGATAGAC
TTTTATCTCTCGAAACTCGATTCAACCAATACATCGGGTTGAAGGTTGAC
AGTGACGGTAGTGTGAATATCAAAGCGTCCAAACATTACGGAGGTAACAG
AGTAGAGACACATAAGACTAATGAGTATACCGAAGAGAATTTTAAGACTT
TGCAAGATCAAATCGACACGGTGGATCGGTTGGTGCATGAACACAAAAAC
AGGTAGGATCGCAGACATCGATAGTATTCTGAAACGAGGGCGACTCCAAA
CAATCTCTCTCTTATAGACAATCCAAGGATATTCGCAATATTGCAAACAT
TTGAGAGCTTCATACGTAGGAGTCCTTTACTCACAATTCCCGATTTAAAA
AACAAGAGGGTTTCTCAGGTTCAGGAATTTCGAGTATGAGTGGACCGGGT
TATAAACTCGTAAGGTTATTAAGCTAAGTTACTCTCGCCGATTACTCACA
AATATTCCATATTTACAAGCATCGGAGACTTACCTAAAAGCCTTGtacgt
tttttaaataacttttcagaaaaaatttttcatggcctaactttttaagt
tttaagcttaaaaatgttctgggACTGCtcatattttcaccattttgtgt
gTGTTTTCGTGCAATTTCTTAACAAAATTGTGTGTTTTAAAGGCTGCAAA
GCctctaaaattttcttattcaaGTTATTGCAATTAACGTGTTGTGGCCC
AGTTCAATTCAGTTNtaaaattttcttattcaaGTTATTGCAATTAAGGT
GTTGTGGCCCCCAGTTCTATTCAGAGATCAAACCTTTCTTGTTGTAGGAT
ATCTTTCATTGAGACCTTTCAAGTGTGGTTGAATGGAACACAAAATGGTA
CCGGAGATTCGAAAGACAACAAAAATTGTTTCTGTTATTCCAATCTTGCA
AGTAAGTTCAATTTTATATCGTTGCATTGGATTCCTTTTCGATTGAGCCT
TTTGGACTAATTGTAATAACCTGGGAATAGACTCTCCTAAATTCAGAACG
TTGTTTGGCCTGTTATATCTGAAATTTCCCTAACGTAAATTTTTATACCT
TATTTTCCACTTTGAAAACAACTTTCGATATCTACATATTGTAGAGCATG
AGAGATCAGGTTcatatattataaaatgacaagcAGTCTAATTTCATTAC
TTTCGAACCGCAATTTTATGGTTGACCATTTTGCGTCTTTTTGCATTGAT
TGTTTGACGCGTTACTATAGCAATTTGTAACCTTTGTAAAATTGTAAACT
TTAATTTATAGAGGAGCAcgccatttttacaaaacaTGGCACCCCGCACC
TATACTAGTCAAAACCAGAAttctattttcttcttttcaggcCAAGCAAA
AAAGTTAGTTTCACCAAGTCCTTCATCAGACAAATGTCAATGTAAAAACG
TAGCCATTGGCCTTCCAGGGCCACCAGGACCCCGAGGGCCGCGTGGACCT
CCAGGCAAAGATGCTGTAATAGATAATAAGGTATAAACCCTTATCTAAAT
TCTTACATTAGGTAGATCCATAAATAATGATTAAAGTAAGTGATAAAAGG
TAAAACTCAAATCAACCGCCTATCGGTACTAGGAGATTTGGTCGAGTTTA
TCACTGAGTaagaaaatcaacattttcagaAATGCTGTTAATCTTTCTCG
GTAAACACCGGTAATCTAGTCTCCCTACATTTTAAGGATTACTTGGTGTA
ATATACCTTAAACTTTTCAAGGTTAACTTTTCTTATGTTAATGAAATTTC
CCTCCTTTTTATTCAGTTATTAGATCAATACCGGGGATTGCCAGGTCATC
AAGGCACCAAAGGTTCGGCAGGAGAACAAGGAGGTATTGGCACACCTGGC
GAAGATGGCGGTGGCTCGTGTAAGAATTGTATTCAGAAGACCAGTACCAC
TTATACTCATTGGGGAAAGAAATCATGCGAAAGCACAAATTTAAATGCAA
CTACTGTTTATCAAGGTAATATATTTCAGTATCTCTTAATTCTAGaatat
tattttgaatattattaGTTTTCTACTGTCTTTCCAGATATTGGTACAAA
ATCAAGTCTCGAAGTGCATTCTCAAATTTTAATCATTTCCCATAACTCTG
AGCGAAATCGAGCAAGAAATTTCCCTTTATTTCAGGTTACGTTGCTGGTT
CGTTCCACACTCAAGACGGAGGCGGATCAAACTATCTATGTCTTCCGGAA
AAGCCGAAATACGGAAAATACGATCAAGCCTTTAACCGAGGAAGCCGTGC
CTTCATCTACGGCGTTGAGTTTGAATTAGGTGATTCAAATGTATTTGATG
ATTCAGATAAGCCTGGTCATTTTAATGCTTTCTGCTCAGTATGTAAAGTT
GAAGAGAAAAGTAGTACCATAATGGTACCTGCCACTACGAGCTGCCCTGA
TGGATGGAACCGAGAGTATCAAGGATACCTTATGGCACAAAAGCGATATC
TCAAAAGGACTGAATATATATGCGTTGATCGCAAACCAGATTTGAGCTCC
AAGACAGCTAAATGGGACAAAGGAGGCTTTTTACATTTCGTTGAAACGAG
ATGTGGTGCGTTGCCATGTCGATCAAATCAGTATGTTGAATATCGTGAAC
TACCCTGCGCTGTCTGTTCAAGTTAGTAAGGAAGTATAGGTTTTGATGGA
GAGCTCTAGACAACAGATTGGTCCACTTCAATACTTTTAGCTGTTTGTAT
TGAATGGTAAACTATGACTGTTACAACACTTCATCTTCATGCAATCGATG
TCTAATCCAGTTCGGTCACGCTCGATCATGACATGAAATGATCCACAGAG
TctggaatttcaaaattcttataGTTTTAGAGGTTTATTTGGCACAGCCA
AGTAATAGCAGCTGCtgatattcgaaaatattgacGAATGTATATAAAAA
TTGTGATTAATAATTTCTTGGTTTGTAAATAGTGTATAATTAATTGGAAC
TTTTATTTATCATAAGATATTTTAACCtcctttgaaaaattaaagaaaga
gACTTAAATCTAAACAATAATTTATTTCTAGATGACGGCGTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043520XLOC_043520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069879-exon-scaffold_511-1491911889:153971..153987TCONS_00069879-exon-scaffold_511-1491911889:153971..153987Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1510915933:153971..153987TCONS_00069879-exon-scaffold_511-1510915933:153971..153987Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1575043694:153971..153987TCONS_00069879-exon-scaffold_511-1575043694:153971..153987Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1491911889:155080..155672TCONS_00069879-exon-scaffold_511-1491911889:155080..155672Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1510915933:155080..155672TCONS_00069879-exon-scaffold_511-1510915933:155080..155672Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1575043694:155080..155672TCONS_00069879-exon-scaffold_511-1575043694:155080..155672Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1491911889:156268..156371TCONS_00069879-exon-scaffold_511-1491911889:156268..156371Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1510915933:156268..156371TCONS_00069879-exon-scaffold_511-1510915933:156268..156371Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1575043694:156268..156371TCONS_00069879-exon-scaffold_511-1575043694:156268..156371Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1491911889:156811..156950TCONS_00069879-exon-scaffold_511-1491911889:156811..156950Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1510915933:156811..156950TCONS_00069879-exon-scaffold_511-1510915933:156811..156950Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1575043694:156811..156950TCONS_00069879-exon-scaffold_511-1575043694:156811..156950Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1491911889:157237..157435TCONS_00069879-exon-scaffold_511-1491911889:157237..157435Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1510915933:157237..157435TCONS_00069879-exon-scaffold_511-1510915933:157237..157435Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1575043694:157237..157435TCONS_00069879-exon-scaffold_511-1575043694:157237..157435Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1491911889:157606..158516TCONS_00069879-exon-scaffold_511-1491911889:157606..158516Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1510915933:157606..158516TCONS_00069879-exon-scaffold_511-1510915933:157606..158516Clytia hemisphaericaexon
TCONS_00069879-exon-scaffold_511-1575043694:157606..158516TCONS_00069879-exon-scaffold_511-1575043694:157606..158516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:153971..158516 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.00275684	1.40925e-09	0.0288826	0	3.29525	1.2402	18.3816	5.57131	4.87152	3.39757	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top