TCONS_00069878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069878
Unique NameTCONS_00069878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069878 ID=TCONS_00069878|Name=TCONS_00069878|organism=Clytia hemisphaerica|type=transcript|length=2082bp
TGGTTTAATACTTAAGGATGATTTGAAGTCATAACAAGTGATCATTAAAA
CTTGATTGCTTCTACACTAATGACGTTTAATAACTCTTTTAATATGGCGT
TGACGACATTCAGGAATATGTTCAAGAAAATATTGgtCTATTAAGTTATG
GAATTAGAAGAACTGATGACGAACCGCGCTTTATTAGAAAAGATGTCTGA
AAATGACATCCATACGCCGTACAGAAAACATCCATCTAAGCACGTCATTA
TACAAGAGAATCACTCCAAACCGAAAGAAAAACCGAAAGAAATTAGAATC
GAATATAAGAACTCACATAATAACATTTCATTTACAACCGCTACTGACAG
ATCGATCACGCCTCCGCCACCGCCCCTCGTCTTGGAAGGCTATGGGTGTA
AATGTCCAAATAAACTgaaaaaagtgatgaaaattTTATGGGTAgtgttg
atatttttatatatCTTTGGTATGCCGATCGTTCTTGTTCACATGCATAC
TAAACTTACAGAGACTGAAGATAGACTTTTATCTCTCGAAACTCGATTCA
ACCAATACATCGGGTTGAAGGTTGACAGTGACGGTAGTGTGAATATCAAA
GCGTCCAAACATTACGGAGGTAACAGAGTAGAGACACATAAGACTAATGA
GTATACCGAAGAGAATTTTAAGACTTTGCAAGATCAAATCGACACGGTGG
ATCGGTTGGTGCATGAACACAAAAACAGGATATCTTTCATTGAGACCTTT
CAAGTGTGGTTGAATGGAACACAAAATGGTACCGGAGATTCGAAAGACAA
CAAAAATTGTTTCTGTTATTCCAATCTTGCAAgcCAAGCAAAAAAGTTAG
TTTCACCAAGTCCTTCATCAGACAAATGTCAATGTAAAAACGTAGCCATT
GGCCTTCCAGGGCCACCAGGACCCCGAGGGCCGCGTGGACCTCCAGGCAA
AGATGCTGTAATAGATAATAAGTTATTAGATCAATACCGGGGATTGCCAG
GTCATCAAGGCACCAAAGGTTCGGCAGGAGAACAAGGAGGTATTGGCACA
CCTGGCGAAGATGGCGGTGGCTCGTGTAAGAATTGTATTCAGAAGACCAG
TACCACTTATACTCATTGGGGAAAGAAATCATGCGAAAGCACAAATTTAA
ATGCAACTACTGTTTATCAAGGTTACGTTGCTGGTTCGTTCCACACTCAA
GACGGAGGCGGATCAAACTATCTATGTCTTCCGGAAAAGCCGAAATACGG
AAAATACGATCAAGCCTTTAACCGAGGAAGCCGTGCCTTCATCTACGGCG
TTGAGTTTGAATTAGGTGATTCAAATGTATTTGATGATTCAGATAAGCCT
GGTCATTTTAATGCTTTCTGCTCAGTATGTAAAGTTGAAGAGAAAAGTAG
TACCATAATGGTACCTGCCACTACGAGCTGCCCTGATGGATGGAACCGAG
AGTATCAAGGATACCTTATGGCACAAAAGCGATATCTCAAAAGGACTGAA
TATATATGCGTTGATCGCAAACCAGATTTGAGCTCCAAGACAGCTAAATG
GGACAAAGGAGGCTTTTTACATTTCGTTGAAACGAGATGTGGTGCGTTGC
CATGTCGATCAAATCAGTATGTTGAATATCGTGAACTACCCTGCGCTGTC
TGTTCAAGTTAGTAAGGAAGTATAGGTTTTGATGGAGAGCTCTAGACAAC
AGATTGGTCCACTTCAATACTTTTAGCTGTTTGTATTGAATGGTAAACTA
TGACTGTTACAACACTTCATCTTCATGCAATCGATGTCTAATCCAGTTCG
GTCACGCTCGATCATGACATGAAATGATCCACAGAGTctggaatttcaaa
attcttataGTTTTAGAGGTTTATTTGGCACAGCCAAGTAATAGCAGCTG
CtgatattcgaaaatattgacGAATGTATATAAAAATTGTGATTAATAAT
TTCTTGGTTTGTAAATAGTGTATAATTAATTGGAACTTTTATTTATCATA
AGATATTTTAACCtcctttgaaaaattaaagaaagagACTTAAATCTAAA
CAATAATTTATTTCTAGATGACGGCGTCTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_511:152822..158516+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069878 ID=TCONS_00069878|Name=TCONS_00069878|organism=Clytia hemisphaerica|type=transcript|length=5695bp|location=Sequence derived from alignment at scaffold_511:152822..158516+ (Clytia hemisphaerica)
TGGTTTAATACTTAAGGATGATTTGAAGTCATAACAAGTGATCATTAAAA
CTTGATTGCTTCTACACTAATGACGTTTAATAACTCTTTTAATATGGCGT
TGACGACATTCAGGAATATGTTCAAGAAAATATTGGTATGTCGATTTTAG
TTTTAACTTTTAAGTTTTACTTTCTTTCCAATTAAACTTGAGTTTGAATA
ACTGAGAAAATGCAGTTGTGCGTACGTCGAATCTTTTATTTGTGGTAATT
ATGATCGCTGAGCGTTTCAAATTATCTTACCTTAGTATATAACTCCCTTC
AGacatacttaaaaaaaaattacttacgCACGCACGTACGAAAATTGACA
CAGGGAATGGCgaaattttatggctcaataaTAATTTTGTAGACTACCAG
AACGATTTGAAGACTGTTAGAAACGAGATTTTAGAAAGTGGAAGCTATTG
ACTCGAGCATGTGTGTCATTGGTAGATATTATCAATATAAGTGATATTGT
GACTCCTACTTCGTGCTTCACAGGATAGGTCGTATAATCCCTACCGGTCT
TAtcgagatgttttttttttcgtcgttaGGTATTCGAAGAATGCAAATTG
GCTCGTGAAGCAACTCTATACGACCTTTGAAATACAGTAGTCGGGGCCTG
GATACTAGAACAATTTAACAACAAACTATTTTATAAAACTATATCaaata
tgaaaattgaaataaaaagtaaaagtgaatttttaatagTTTAATCTTCA
AACTGAGATATATAACCGCGCGTTTATTTTCATATTATGTCACATTTTTC
TGTGATcgtttttaaacaatttttttcttgtctTATCTTATCAAAGAATT
TTTCCTGAGAGAAGGGCGATTAAAGGGACCGTATCACTGTGTGAACGGGA
TGCTGACATAATCAACACTATCTGATCGCTTCTTGTGTAATTAAAGATAA
ACTCTTGAAGGATCGGTCGGTTGCTTGATCACATAATTAATTTATAGACT
TAATTGTTCCATTCGGTCTGCAATTTTCAAAGTACTTTTTCTAGGTTGAA
TTATTTTCCTGCCATTTCGTGTCTGGCTTGACATTTTCGTATGGATTTCA
TTGAAGACCGGTCAGGGTAATAACGAGTCTTAAGTGACGAAGGACGGCTG
GAACGCGCCGCAGATGGTTAGTATTTTTCTCTGTCTAAGATCCTGACTGA
CTGGAGAGTACGGGAAATCAATGTTCGATTATATGTTTTGAAACTGCGGC
TTGTTTATCGTTAAAAAACGAAGATACGCAAGAGAGTGAAAATTTACAGA
ATCGATTATAGTAGAGAATGGTATAGATTTGCTTCTACTGAGTGAAAAGA
GTTTAGATTTATCTTTGAAAATGAATGAGGTTTGGGTCTGATCTTCTTCG
TACGGAACGGCCGTGTTTCTAGCTGAATCTACTGATGAACTTTGCGGGAT
CTCTTTTTTTGGAGAAATATGCGTTGGAAAGTTACTGGTTTTATTCCTGG
TTTAATAAAACAAACATCTTTATTATATTGCAAAGAGATAATAGCTGGCT
CTTTTTGCAAAAACCGTCCATAATGACTGCCAATTGACATGTTGTCTCTA
ATGAATAATTACATAGTGCCTTTGAGAAGAGAAAGAAACCTaaggaaaat
atttcttaaaatgtGTGGGAAGTATTTGGCTTGCTTTCTAGGGCTAATAT
CGTCCCTTAAAACCTCTCTTTCTCGTCTATACGTCAGTTGAATACTGCTT
TGGTTCTTCACGTACGGATCATTAAAGGTTCGTAGAGGCTCTGTATTTGT
GCCAAAGTTGCCAAATGCATTAGAATCTTTGATATTCTTGCCTTGGAGCG
TAAGTGAAAATCATCGTCGCGTTTTGCAATATACTTTTGTGTTCATAAAA
TTCAGTTAATTAATTTTATGCAATACGTGATTTGATATGCGGTGTCCAGT
ACGATATCTTGTGATACCTTGTTATCAGCTCAAATGAAGTCTTGAAGTGA
CATGTTAATTCCATCAACAGTTTTTCTCACCGTCGCGCTAATAAACTCAG
CAAAATGCATATATTCTACGTGTCTATCGCACATTGCTTTTTTTATCATA
CCTAAAATTTCGAGAGGAATTTTGTTGGATCtggatttgtttgtttgttt
tcatacaaaaacattTTCGATTCCACTATGAGAGCTAACAAATATACGTT
TTGCAATACGTGTTACCTTACCATACACAATTTAACcaattcatttttgt
tttttcaggtCTATTAAGTTATGGAATTAGAAGAACTGATGACGAACCGC
GCTTTATTAGAAAAGATGTCTGAAAATGACATCCATACGCCGTACAGAAA
ACATCCATCTAAGCACGTCATTATACAAGAGAATCACTCCAAACCGAAAG
AAAAACCGAAAGAAATTAGAATCGAATATAAGAACTCACATAATAACATT
TCATTTACAACCGCTACTGACAGATCGATCACGCCTCCGCCACCGCCCCT
CGTCTTGGAAGGCTATGGGTGTAAATGTCCAAATAAACTgaaaaaagtga
tgaaaattTTATGGGTAgtgttgatatttttatatatCTTTGGTATGCCG
ATCGTTCTTGTTCACATGCATACTAAACTTACAGAGACTGAAGATAGACT
TTTATCTCTCGAAACTCGATTCAACCAATACATCGGGTTGAAGGTTGACA
GTGACGGTAGTGTGAATATCAAAGCGTCCAAACATTACGGAGGTAACAGA
GTAGAGACACATAAGACTAATGAGTATACCGAAGAGAATTTTAAGACTTT
GCAAGATCAAATCGACACGGTGGATCGGTTGGTGCATGAACACAAAAACA
GGTAGGATCGCAGACATCGATAGTATTCTGAAACGAGGGCGACTCCAAAC
AATCTCTCTCTTATAGACAATCCAAGGATATTCGCAATATTGCAAACATT
TGAGAGCTTCATACGTAGGAGTCCTTTACTCACAATTCCCGATTTAAAAA
ACAAGAGGGTTTCTCAGGTTCAGGAATTTCGAGTATGAGTGGACCGGGTT
ATAAACTCGTAAGGTTATTAAGCTAAGTTACTCTCGCCGATTACTCACAA
ATATTCCATATTTACAAGCATCGGAGACTTACCTAAAAGCCTTGtacgtt
ttttaaataacttttcagaaaaaatttttcatggcctaactttttaagtt
ttaagcttaaaaatgttctgggACTGCtcatattttcaccattttgtgtg
TGTTTTCGTGCAATTTCTTAACAAAATTGTGTGTTTTAAAGGCTGCAAAG
CctctaaaattttcttattcaaGTTATTGCAATTAACGTGTTGTGGCCCA
GTTCAATTCAGTTNtaaaattttcttattcaaGTTATTGCAATTAAGGTG
TTGTGGCCCCCAGTTCTATTCAGAGATCAAACCTTTCTTGTTGTAGGATA
TCTTTCATTGAGACCTTTCAAGTGTGGTTGAATGGAACACAAAATGGTAC
CGGAGATTCGAAAGACAACAAAAATTGTTTCTGTTATTCCAATCTTGCAA
GTAAGTTCAATTTTATATCGTTGCATTGGATTCCTTTTCGATTGAGCCTT
TTGGACTAATTGTAATAACCTGGGAATAGACTCTCCTAAATTCAGAACGT
TGTTTGGCCTGTTATATCTGAAATTTCCCTAACGTAAATTTTTATACCTT
ATTTTCCACTTTGAAAACAACTTTCGATATCTACATATTGTAGAGCATGA
GAGATCAGGTTcatatattataaaatgacaagcAGTCTAATTTCATTACT
TTCGAACCGCAATTTTATGGTTGACCATTTTGCGTCTTTTTGCATTGATT
GTTTGACGCGTTACTATAGCAATTTGTAACCTTTGTAAAATTGTAAACTT
TAATTTATAGAGGAGCAcgccatttttacaaaacaTGGCACCCCGCACCT
ATACTAGTCAAAACCAGAAttctattttcttcttttcaggcCAAGCAAAA
AAGTTAGTTTCACCAAGTCCTTCATCAGACAAATGTCAATGTAAAAACGT
AGCCATTGGCCTTCCAGGGCCACCAGGACCCCGAGGGCCGCGTGGACCTC
CAGGCAAAGATGCTGTAATAGATAATAAGGTATAAACCCTTATCTAAATT
CTTACATTAGGTAGATCCATAAATAATGATTAAAGTAAGTGATAAAAGGT
AAAACTCAAATCAACCGCCTATCGGTACTAGGAGATTTGGTCGAGTTTAT
CACTGAGTaagaaaatcaacattttcagaAATGCTGTTAATCTTTCTCGG
TAAACACCGGTAATCTAGTCTCCCTACATTTTAAGGATTACTTGGTGTAA
TATACCTTAAACTTTTCAAGGTTAACTTTTCTTATGTTAATGAAATTTCC
CTCCTTTTTATTCAGTTATTAGATCAATACCGGGGATTGCCAGGTCATCA
AGGCACCAAAGGTTCGGCAGGAGAACAAGGAGGTATTGGCACACCTGGCG
AAGATGGCGGTGGCTCGTGTAAGAATTGTATTCAGAAGACCAGTACCACT
TATACTCATTGGGGAAAGAAATCATGCGAAAGCACAAATTTAAATGCAAC
TACTGTTTATCAAGGTAATATATTTCAGTATCTCTTAATTCTAGaatatt
attttgaatattattaGTTTTCTACTGTCTTTCCAGATATTGGTACAAAA
TCAAGTCTCGAAGTGCATTCTCAAATTTTAATCATTTCCCATAACTCTGA
GCGAAATCGAGCAAGAAATTTCCCTTTATTTCAGGTTACGTTGCTGGTTC
GTTCCACACTCAAGACGGAGGCGGATCAAACTATCTATGTCTTCCGGAAA
AGCCGAAATACGGAAAATACGATCAAGCCTTTAACCGAGGAAGCCGTGCC
TTCATCTACGGCGTTGAGTTTGAATTAGGTGATTCAAATGTATTTGATGA
TTCAGATAAGCCTGGTCATTTTAATGCTTTCTGCTCAGTATGTAAAGTTG
AAGAGAAAAGTAGTACCATAATGGTACCTGCCACTACGAGCTGCCCTGAT
GGATGGAACCGAGAGTATCAAGGATACCTTATGGCACAAAAGCGATATCT
CAAAAGGACTGAATATATATGCGTTGATCGCAAACCAGATTTGAGCTCCA
AGACAGCTAAATGGGACAAAGGAGGCTTTTTACATTTCGTTGAAACGAGA
TGTGGTGCGTTGCCATGTCGATCAAATCAGTATGTTGAATATCGTGAACT
ACCCTGCGCTGTCTGTTCAAGTTAGTAAGGAAGTATAGGTTTTGATGGAG
AGCTCTAGACAACAGATTGGTCCACTTCAATACTTTTAGCTGTTTGTATT
GAATGGTAAACTATGACTGTTACAACACTTCATCTTCATGCAATCGATGT
CTAATCCAGTTCGGTCACGCTCGATCATGACATGAAATGATCCACAGAGT
ctggaatttcaaaattcttataGTTTTAGAGGTTTATTTGGCACAGCCAA
GTAATAGCAGCTGCtgatattcgaaaatattgacGAATGTATATAAAAAT
TGTGATTAATAATTTCTTGGTTTGTAAATAGTGTATAATTAATTGGAACT
TTTATTTATCATAAGATATTTTAACCtcctttgaaaaattaaagaaagag
ACTTAAATCTAAACAATAATTTATTTCTAGATGACGGCGTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043520XLOC_043520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069878-exon-scaffold_511-1491911889:152822..152956TCONS_00069878-exon-scaffold_511-1491911889:152822..152956Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1510915933:152822..152956TCONS_00069878-exon-scaffold_511-1510915933:152822..152956Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1575043694:152822..152956TCONS_00069878-exon-scaffold_511-1575043694:152822..152956Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1491911889:155080..155672TCONS_00069878-exon-scaffold_511-1491911889:155080..155672Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1510915933:155080..155672TCONS_00069878-exon-scaffold_511-1510915933:155080..155672Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1575043694:155080..155672TCONS_00069878-exon-scaffold_511-1575043694:155080..155672Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1491911889:156268..156371TCONS_00069878-exon-scaffold_511-1491911889:156268..156371Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1510915933:156268..156371TCONS_00069878-exon-scaffold_511-1510915933:156268..156371Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1575043694:156268..156371TCONS_00069878-exon-scaffold_511-1575043694:156268..156371Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1491911889:156811..156950TCONS_00069878-exon-scaffold_511-1491911889:156811..156950Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1510915933:156811..156950TCONS_00069878-exon-scaffold_511-1510915933:156811..156950Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1575043694:156811..156950TCONS_00069878-exon-scaffold_511-1575043694:156811..156950Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1491911889:157237..157435TCONS_00069878-exon-scaffold_511-1491911889:157237..157435Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1510915933:157237..157435TCONS_00069878-exon-scaffold_511-1510915933:157237..157435Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1575043694:157237..157435TCONS_00069878-exon-scaffold_511-1575043694:157237..157435Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1491911889:157606..158516TCONS_00069878-exon-scaffold_511-1491911889:157606..158516Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1510915933:157606..158516TCONS_00069878-exon-scaffold_511-1510915933:157606..158516Clytia hemisphaericaexon
TCONS_00069878-exon-scaffold_511-1575043694:157606..158516TCONS_00069878-exon-scaffold_511-1575043694:157606..158516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:152822..158516 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0415974	6.35299	3.44943	0	0.0216957	0	0.484964	8.39547	12.0637	1.04791	0.772883	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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