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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069871 ID=TCONS_00069871|Name=TCONS_00069871|organism=Clytia hemisphaerica|type=transcript|length=1016bp
GCAATTTTTAGCCCTTGAAACGCTGTTAAAAGGTATAGATGCTCTTGAAT
GTTACGATTGTTATGGACGCGAAGGATATTGTAACGTTTCAACCACTACG
AAAACGTGTGGAGGTCCAAACTTTTCTTGTCTTTTGTATTTCGAGAACAA
ACAGAAACGCATTGGCTCCACCATCCGGAATCTTCAAATAAGGAAACAGG
GCTGTGTTGTGGAAATGAGGAATTACTGTGcaacgaaaatgaaaaataat
cctGGAATTATTTCTTGCAAGgcATTCTGGTGCTACAAAGACTTGTGTAA
TTTTCCAAGAAGAAATGAAGATAATGCAGAAAGTGAAGTCGAAGGAAATG
AAATCGATCACAAACCGAAAGGAATTGTTGtcgaaaaagaatattttgag
cCTTACAAATTGAATGCAGGATCATATTTGGTGTTGCAATATAAAATGGT
TCTCATATGCGTAGCACTGACTTTTTTTTCTGCTTATATTAACTTTATTT
GGTGAACATTTTCACCATAGCTGATATGATCAACAGTCCAACCTTGTTAC
CGAGCAGATTTTACTCTCACCTCAGTAAAGCCTTGAATTCATTTAACATC
TGTACCACAGCTCGATTGAAGACTTTGCCTCTGGTACCCTGAGATATTGA
ATATACCGGGACAAGGGTGATCACAATTTTGGAGAGAAAATTAGAAcaat
tctttgtttttatgaaatatatttttcaatataaaaaatatcgaaaacac
ACAAAACTAACTGACAATGTTTCATGCTGGTGCCCGTGCTGGTGTGAtat
cgaaaaatgttgattttgatttcaattctatatATCTAAAATTCCAAACC
TGAAAAACAATCATTGCTTTTCGTTAGCGCTACTGTACGAGAGCAGATTT
TTTAGTTTCACTATATTTACAATTTACTATTATCAAAGCCTTGAATGCTG
CATGTACCAAGTGTATCACAACTCAATTGAAAACTTGACTTCTGGTACCC
CAAGGTATTATTGAAT Run BLAST on NCBI protein sequence of TCONS_00069871-protein >TCONS_00069871-protein ID=TCONS_00069871-protein|Name=TCONS_00069871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
QFLALETLLKGIDALECYDCYGREGYCNVSTTTKTCGGPNFSCLLYFENK
QKRIGSTIRNLQIRKQGCVVEMRNYCATKMKNNPGIISCKAFWCYKDLCN
FPRRNEDNAESEVEGNEIDHKPKGIVVEKEYFEPYKLNAGSYLVLQYKMV
LICVALTFFSAYINFIW Run BLAST on NCBI transcript from alignment at scaffold_511:112669..114300+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069871 ID=TCONS_00069871|Name=TCONS_00069871|organism=Clytia hemisphaerica|type=transcript|length=1632bp|location=Sequence derived from alignment at scaffold_511:112669..114300+ (Clytia hemisphaerica)
GCAATTTTTAGCCCTTGAAACGCTGTTAAAAGGTAAATATGTGAACTTCT
TTCTGCCTGTTCTTCAATTCGTTAGTTGaggaatcaaattaataaactta
cactttttttcataagaacaattttataagaacaatgaggttCAAGATcg
gcaaaaaataagaacaatttaagaacaatgctgagcctgaaattactctc
aatttcaagcaatttatgGGTGAAAGttgtaaaaattgggtatagtGCCT
AAAATGAGGTCATTTAATACAACCTATGAAttagaacaggataagaacaa
tttgaggctcaaaagtgccaaaaaaataagaacagccgagcctcagcaaa
attttactggttcttataaaaaatcttttaacgATTCTATTCAGGTATAG
ATGCTCTTGAATGTTACGATTGTTATGGACGCGAAGGATATTGTAACGTT
TCAACCACTACGAAAACGTGTGGAGGTCCAAACTTTTCTTGTCTTTTGTA
TTTCGAGAACAAACAGAAACGCATTGGCTCCACCATCCGGAATCTTCAAA
TAAGGAAACAGGGCTGTGTTGTGGAAATGAGGAATTACTGTGcaacgaaa
atgaaaaataatcctGGAATTATTTCTTGCAAGGTTAGATGAGAAATTTC
TATTGTAGCTGACTTTTGTACTTATAATTATATCTCtcgtttgaaatttt
cattcaagaaaaatttaatcaaGAAGCTTAATATCGATGGGATGAAATAC
TCTAGTTGGTAGCTCCAAATTCCAAAGGGCTTATCGGGGAGAATAGTATT
TTTCTCacggaaagatttttttgttttaatggtCCTCTTACAGTCAATGC
TGACTCTAGCTAGTCTCAatgtatttcattttttcaggcATTCTGGTGCT
ACAAAGACTTGTGTAATTTTCCAAGAAGAAATGAAGATAATGCAGAAAGT
GAAGTCGAAGGAAATGAAATCGATCACAAACCGAAAGGAATTGTTGtcga
aaaagaatattttgagcCTTACAAATTGAATGCAGGATCATATTTGGTGT
TGCAATATAAAATGGTTCTCATATGCGTAGCACTGACTTTTTTTTCTGCT
TATATTAACTTTATTTGGTGAACATTTTCACCATAGCTGATATGATCAAC
AGTCCAACCTTGTTACCGAGCAGATTTTACTCTCACCTCAGTAAAGCCTT
GAATTCATTTAACATCTGTACCACAGCTCGATTGAAGACTTTGCCTCTGG
TACCCTGAGATATTGAATATACCGGGACAAGGGTGATCACAATTTTGGAG
AGAAAATTAGAAcaattctttgtttttatgaaatatatttttcaatataa
aaaatatcgaaaacacACAAAACTAACTGACAATGTTTCATGCTGGTGCC
CGTGCTGGTGTGAtatcgaaaaatgttgattttgatttcaattctatatA
TCTAAAATTCCAAACCTGAAAAACAATCATTGCTTTTCGTTAGCGCTACT
GTACGAGAGCAGATTTTTTAGTTTCACTATATTTACAATTTACTATTATC
AAAGCCTTGAATGCTGCATGTACCAAGTGTATCACAACTCAATTGAAAAC
TTGACTTCTGGTACCCCAAGGTATTATTGAAT Coding sequence (CDS) from alignment at scaffold_511:112669..114300+ >TCONS_00069871 ID=TCONS_00069871|Name=TCONS_00069871|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_511:112669..114300+ (Clytia hemisphaerica)
CAATTTTTAGCCCTTGAAACGCTGTTAAAAGGTATAGATGCTCTTGAATG
TTACGATTGTTATGGACGCGAAGGATATTGTAACGTTTCAACCACTACGA
AAACGTGTGGAGGTCCAAACTTTTCTTGTCTTTTGTATTTCGAGAACAAA
CAGAAACGCATTGGCTCCACCATCCGGAATCTTCAAATAAGGAAACAGGG
CTGTGTTGTGGAAATGAGGAATTACTGTGcaacgaaaatgaaaaataatc
ctGGAATTATTTCTTGCAAGgcATTCTGGTGCTACAAAGACTTGTGTAAT
TTTCCAAGAAGAAATGAAGATAATGCAGAAAGTGAAGTCGAAGGAAATGA
AATCGATCACAAACCGAAAGGAATTGTTGtcgaaaaagaatattttgagc
CTTACAAATTGAATGCAGGATCATATTTGGTGTTGCAATATAAAATGGTT
CTCATATGCGTAGCACTGACTTTTTTTTCTGCTTATATTAACTTTATTTG
GTGACAATTTTTAGCCCTTGAAACGCTGTTAAAAGGTATAGATGCTCTTG
AATGTTACGATTGTTATGGACGCGAAGGATATTGTAACGTTTCAACCACT
ACGAAAACGTGTGGAGGTCCAAACTTTTCTTGTCTTTTGTATTTCGAGAA
CAAACAGAAACGCATTGGCTCCACCATCCGGAATCTTCAAATAAGGAAAC
AGGGCTGTGTTGTGGAAATGAGGAATTACTGTGcaacgaaaatgaaaaat
aatcctGGAATTATTTCTTGCAAGgcATTCTGGTGCTACAAAGACTTGTG
TAATTTTCCAAGAAGAAATGAAGATAATGCAGAAAGTGAAGTCGAAGGAA
ATGAAATCGATCACAAACCGAAAGGAATTGTTGtcgaaaaagaatatttt
gagcCTTACAAATTGAATGCAGGATCATATTTGGTGTTGCAATATAAAAT
GGTTCTCATATGCGTAGCACTGACTTTTTTTTCTGCTTATATTAACTTTA
TTTGGTGACAATTTTTAGCCCTTGAAACGCTGTTAAAAGGTATAGATGCT
CTTGAATGTTACGATTGTTATGGACGCGAAGGATATTGTAACGTTTCAAC
CACTACGAAAACGTGTGGAGGTCCAAACTTTTCTTGTCTTTTGTATTTCG
AGAACAAACAGAAACGCATTGGCTCCACCATCCGGAATCTTCAAATAAGG
AAACAGGGCTGTGTTGTGGAAATGAGGAATTACTGTGcaacgaaaatgaa
aaataatcctGGAATTATTTCTTGCAAGgcATTCTGGTGCTACAAAGACT
TGTGTAATTTTCCAAGAAGAAATGAAGATAATGCAGAAAGTGAAGTCGAA
GGAAATGAAATCGATCACAAACCGAAAGGAATTGTTGtcgaaaaagaata
ttttgagcCTTACAAATTGAATGCAGGATCATATTTGGTGTTGCAATATA
AAATGGTTCTCATATGCGTAGCACTGACTTTTTTTTCTGCTTATATTAAC
TTTATTTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069871-exon-scaffold_511-1491911889:112669..112700 | TCONS_00069871-exon-scaffold_511-1491911889:112669..112700 | Clytia hemisphaerica | exon |
| TCONS_00069871-exon-scaffold_511-1510915933:112669..112700 | TCONS_00069871-exon-scaffold_511-1510915933:112669..112700 | Clytia hemisphaerica | exon |
| TCONS_00069871-exon-scaffold_511-1575043694:112669..112700 | TCONS_00069871-exon-scaffold_511-1575043694:112669..112700 | Clytia hemisphaerica | exon |
| TCONS_00069871-exon-scaffold_511-1491911889:113063..113301 | TCONS_00069871-exon-scaffold_511-1491911889:113063..113301 | Clytia hemisphaerica | exon |
| TCONS_00069871-exon-scaffold_511-1510915933:113063..113301 | TCONS_00069871-exon-scaffold_511-1510915933:113063..113301 | Clytia hemisphaerica | exon |
| TCONS_00069871-exon-scaffold_511-1575043694:113063..113301 | TCONS_00069871-exon-scaffold_511-1575043694:113063..113301 | Clytia hemisphaerica | exon |
| TCONS_00069871-exon-scaffold_511-1491911889:113556..114300 | TCONS_00069871-exon-scaffold_511-1491911889:113556..114300 | Clytia hemisphaerica | exon |
| TCONS_00069871-exon-scaffold_511-1510915933:113556..114300 | TCONS_00069871-exon-scaffold_511-1510915933:113556..114300 | Clytia hemisphaerica | exon |
| TCONS_00069871-exon-scaffold_511-1575043694:113556..114300 | TCONS_00069871-exon-scaffold_511-1575043694:113556..114300 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:112669..114300 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018363 | CD59_antigen_CS |
Blast
The following BLAST results are available for this feature:
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