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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069869 ID=TCONS_00069869|Name=TCONS_00069869|organism=Clytia hemisphaerica|type=transcript|length=572bp
aGAAAAGAACATCTTGAAAGGAAATACTATTACTCAATTTGTGGTTTTTT
CACGTTCAACAGAATTGACCAGAacaaaatgaattttcaaattcttgTCA
TTTTCTGTTTCAGTTGCATAGTGGGAGAAGCTTTCACCTTGGAATGCTAC
CAGTGTTCAGCTCACAAAGGAGCATCATGCCGATCAAATGACCGTCAAAC
GTGCCAAGAACCAAATTCTGTTTGTCTGACGCAAACATATAAATATCAAT
TTGGTAAAGAAGAGAAAACTCGTTTCATCAAAAGATGCGCGGACGGAAAA
GAAAAGTGCGAGAACAATTGCAAATATGTTGGTAGAAGGTCCTATGACTG
CAAGGTGTCATGCTGTTCCTCCAACTTCTGTAATGAGGAGGTAGACTCTA
AAGTGATATGGTATGCTTTGTTACGATCTAGTGGTGGAAGTGTAATCAAA
AGTGGAATGAAGATACTCAATTTATTGATCTCAACGCTACCTGTGCTTCT
AGCCAGTTTGATAcagttttattgattttctatcgaatttttgtaaataa
gacATACGATGTTGCaaatttt Run BLAST on NCBI protein sequence of TCONS_00069869-protein >TCONS_00069869-protein ID=TCONS_00069869-protein|Name=TCONS_00069869-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
RKEHLERKYYYSICGFFTFNRIDQNKMNFQILVIFCFSCIVGEAFTLECY
QCSAHKGASCRSNDRQTCQEPNSVCLTQTYKYQFGKEEKTRFIKRCADGK
EKCENNCKYVGRRSYDCKVSCCSSNFCNEEVDSKVIWYALLRSSGGSVIK
SGMKILNLLISTLPVLLASLIQFY Run BLAST on NCBI transcript from alignment at scaffold_511:65897..67697+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069869 ID=TCONS_00069869|Name=TCONS_00069869|organism=Clytia hemisphaerica|type=transcript|length=1801bp|location=Sequence derived from alignment at scaffold_511:65897..67697+ (Clytia hemisphaerica)
aGAAAAGAACATCTTGAAAGGAAATACTATTACTCAATTTGTGGTTTTTT
CACGTTCAACAGAATTGACCAGAacaaaatgaattttcaaattcttgTCA
TTTTCTGTTTCAGTTGCATAGTGGGAGAAGGTAAGCTTGAAACATTGGCA
GAtaatcattgaaaaaaaatggtttcctttcattctttttttttactctG
ACTCAGTCCCGGCCACCTTAAACCCTATGGTGCTGGAATTCCCCGGCTAG
GAGCTCTTTCAATTGTAAAGTTATTTTTTAGTTCatgttgttttgtttgt
tgTGATGAGGAAATGATTCCCACTTCCAATGCTCtcagtcaaaattttga
caaattaagAAAAATCGCACAATTAAGTTTTCAGCAATCTCCACAATATT
GCCTGGTTTCATTTTTCTAAAGAGGAAATCGCGTTGTAAAGCCCCATACA
GTAGAAAGGCGATAATGAAGaatttctgcaaaattttgacACTGCCTACA
ATCGTTGGGAAacaacggagaaaatttttgattttaaaggtgcgaaaaat
gttgtttcaagCTATGTTTGGaaataatttaaataaaaatagttGAAATA
TGAGAACAAATAGCAAAATATACtcaataattagtaaaataagtatattt
tctccaaaattatTAAGATTAGTAACATTAGGACGTGTCTGAGAGCCCTG
CAATTCATAACACCACGATATTTTTTGCCAATATCTTGGATATTTTCGAA
ATTGATTAAtggtaaattatttttaatgatttaGCTTTCACCTTGGAATG
CTACCAGTGTTCAGCTCACAAAGGAGCATCATGCCGATCAAATGACCGTC
AAACGTGCCAAGAACCAAATTCTGTTTGTCTGACGCAAACATATAAATAT
CAATTTGGTAAAGAAGAGAAAACTCGTTTCATCAAAAGATGCGCGGACGG
AAAAGAAAAGTGCGAGAACAATTGCAAATATGTTGGTAGAAGGTCCTATG
ACTGCAAGGTACATTACTTTCGTGACATTCGCAGCAATTGTAATGCTCAA
ATGTTAATGATTCAAAATTCATGAATACCTTACGGTTCCACATGGTTTCG
GAAGGACATGAAGCCATCCTATTGGTTAAAAATTACATTGCGTCCTAAAT
TGGCCAGTTatagaattgcttcattttgtTTCAGAGGGATAATGGAAAGT
GCAACGTAATATCAAAACGCCGTTTTTCTTTAGAAATCCAAATCCTTACC
TTAACAAGAGGTTGAAGTGATCTCTTCAAAGCATCACGCTTCACGAAATC
CATTTtccatatttatatttttagttttcactgaaaatgaaataaaatct
aaattaaAAGGACATGTTACATATCagatcagacacatgtttcatcagga
cagtgtcttccttttgttatattatgcagatataaacaaaaaatgctttt
cttttcctctttctgactaatcttgctccacatccgtgttaatccaatgt
gaaaaagcttgttaaTTAAAATTGAAGAGTAAGCAGATATcactcttttt
taaaaataaaaactttaatttcttttgttgcaGGTGTCATGCTGTTCCTC
CAACTTCTGTAATGAGGAGGTAGACTCTAAAGTGATATGGTATGCTTTGT
TACGATCTAGTGGTGGAAGTGTAATCAAAAGTGGAATGAAGATACTCAAT
TTATTGATCTCAACGCTACCTGTGCTTCTAGCCAGTTTGATAcagtttta
ttgattttctatcgaatttttgtaaataagacATACGATGTTGCaaattt
t Coding sequence (CDS) from alignment at scaffold_511:65897..67697+ >TCONS_00069869 ID=TCONS_00069869|Name=TCONS_00069869|organism=Clytia hemisphaerica|type=CDS|length=1575bp|location=Sequence derived from alignment at scaffold_511:65897..67697+ (Clytia hemisphaerica)
aGAAAAGAACATCTTGAAAGGAAATACTATTACTCAATTTGTGGTTTTTT
CACGTTCAACAGAATTGACCAGAacaaaatgaattttcaaattcttgTCA
TTTTCTGTTTCAGTTGCATAGTGGGAGAAGCTTTCACCTTGGAATGCTAC
CAGTGTTCAGCTCACAAAGGAGCATCATGCCGATCAAATGACCGTCAAAC
GTGCCAAGAACCAAATTCTGTTTGTCTGACGCAAACATATAAATATCAAT
TTGGTAAAGAAGAGAAAACTCGTTTCATCAAAAGATGCGCGGACGGAAAA
GAAAAGTGCGAGAACAATTGCAAATATGTTGGTAGAAGGTCCTATGACTG
CAAGGTGTCATGCTGTTCCTCCAACTTCTGTAATGAGGAGGTAGACTCTA
AAGTGATATGGTATGCTTTGTTACGATCTAGTGGTGGAAGTGTAATCAAA
AGTGGAATGAAGATACTCAATTTATTGATCTCAACGCTACCTGTGCTTCT
AGCCAGTTTGATAcagttttattgaaGAAAAGAACATCTTGAAAGGAAAT
ACTATTACTCAATTTGTGGTTTTTTCACGTTCAACAGAATTGACCAGAac
aaaatgaattttcaaattcttgTCATTTTCTGTTTCAGTTGCATAGTGGG
AGAAGCTTTCACCTTGGAATGCTACCAGTGTTCAGCTCACAAAGGAGCAT
CATGCCGATCAAATGACCGTCAAACGTGCCAAGAACCAAATTCTGTTTGT
CTGACGCAAACATATAAATATCAATTTGGTAAAGAAGAGAAAACTCGTTT
CATCAAAAGATGCGCGGACGGAAAAGAAAAGTGCGAGAACAATTGCAAAT
ATGTTGGTAGAAGGTCCTATGACTGCAAGGTGTCATGCTGTTCCTCCAAC
TTCTGTAATGAGGAGGTAGACTCTAAAGTGATATGGTATGCTTTGTTACG
ATCTAGTGGTGGAAGTGTAATCAAAAGTGGAATGAAGATACTCAATTTAT
TGATCTCAACGCTACCTGTGCTTCTAGCCAGTTTGATAcagttttattga
aGAAAAGAACATCTTGAAAGGAAATACTATTACTCAATTTGTGGTTTTTT
CACGTTCAACAGAATTGACCAGAacaaaatgaattttcaaattcttgTCA
TTTTCTGTTTCAGTTGCATAGTGGGAGAAGCTTTCACCTTGGAATGCTAC
CAGTGTTCAGCTCACAAAGGAGCATCATGCCGATCAAATGACCGTCAAAC
GTGCCAAGAACCAAATTCTGTTTGTCTGACGCAAACATATAAATATCAAT
TTGGTAAAGAAGAGAAAACTCGTTTCATCAAAAGATGCGCGGACGGAAAA
GAAAAGTGCGAGAACAATTGCAAATATGTTGGTAGAAGGTCCTATGACTG
CAAGGTGTCATGCTGTTCCTCCAACTTCTGTAATGAGGAGGTAGACTCTA
AAGTGATATGGTATGCTTTGTTACGATCTAGTGGTGGAAGTGTAATCAAA
AGTGGAATGAAGATACTCAATTTATTGATCTCAACGCTACCTGTGCTTCT
AGCCAGTTTGATAcagttttattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069869-exon-scaffold_511-1491911889:65897..66026 | TCONS_00069869-exon-scaffold_511-1491911889:65897..66026 | Clytia hemisphaerica | exon |
| TCONS_00069869-exon-scaffold_511-1510915933:65897..66026 | TCONS_00069869-exon-scaffold_511-1510915933:65897..66026 | Clytia hemisphaerica | exon |
| TCONS_00069869-exon-scaffold_511-1575043694:65897..66026 | TCONS_00069869-exon-scaffold_511-1575043694:65897..66026 | Clytia hemisphaerica | exon |
| TCONS_00069869-exon-scaffold_511-1491911889:66681..66904 | TCONS_00069869-exon-scaffold_511-1491911889:66681..66904 | Clytia hemisphaerica | exon |
| TCONS_00069869-exon-scaffold_511-1510915933:66681..66904 | TCONS_00069869-exon-scaffold_511-1510915933:66681..66904 | Clytia hemisphaerica | exon |
| TCONS_00069869-exon-scaffold_511-1575043694:66681..66904 | TCONS_00069869-exon-scaffold_511-1575043694:66681..66904 | Clytia hemisphaerica | exon |
| TCONS_00069869-exon-scaffold_511-1491911889:67480..67697 | TCONS_00069869-exon-scaffold_511-1491911889:67480..67697 | Clytia hemisphaerica | exon |
| TCONS_00069869-exon-scaffold_511-1510915933:67480..67697 | TCONS_00069869-exon-scaffold_511-1510915933:67480..67697 | Clytia hemisphaerica | exon |
| TCONS_00069869-exon-scaffold_511-1575043694:67480..67697 | TCONS_00069869-exon-scaffold_511-1575043694:67480..67697 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:65897..67697 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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