TCONS_00069868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069868
Unique NameTCONS_00069868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069868 ID=TCONS_00069868|Name=TCONS_00069868|organism=Clytia hemisphaerica|type=transcript|length=1385bp
GTTCGAACAGAGTGGTATAAAACGAAAGTAGAAACAGTCAGCTACCTATT
TTCTCTTCATTCTTCATTTTTGATAGATTTTCATATATATCGGTATAGAT
TTGTCAAATTGGTATCATGGATAGtacaCATCTATGTACATTGCTGACAT
TAGGGGTTGTCTTCTTTTCAACAACAAGCGCACAACCCTACCTACGACCC
TCATATCCACTCAAATATCAACGTTCAATACCATACGAGCCAGGGTATGA
AGCAAACCCTATACGATGGGGAAAGAGAAACTCTCTTTACCAAGACACCG
AAGATGCTGGTCTTTGGGGGAAACGACAGGAAGAACTTGGTGAAGGGTTA
TGGGGCAAGCGAGACATTGATGACGTCAGACTTTATAGTAAGCGAGTCCA
ACTGAAACCTCGACAGGATCCGGAAATAATGACAACGAATGATATTTCGG
ATTTGTTAGAACGCGATAATAAAGCTATGGTAGAAAGCTTAGTGAAGTTG
CGTCTCGATGTAGACGAGGCTTTAAGACATTTTAATATCGTAGAAATTCA
AGAGGATAAAAGACAAGACCTCGAATCTGCTGGGTTATGGGGGTAAATGA
ATGCGAATATCTATTGGTCATAAGAGGTACATCCTATGAAGAGGAAAAGA
CAGCGATGGATGACTGTTGAGGCAACCTTTGGTTCGGACAGAATTTAGCT
TGTCTAATATGCAATTAGAAATTTCTTACATATTTTtgttaaataaaata
attcttctTTTGTATACTATGAAATATCACAATGATAGAAAAATCATTGC
ATCATGAAAATCGCACAAGACATAAGTCAATAATAATGGAGAGTATTTGT
TTGTAGTCCCGCTCCTAAATTCACATTGCTAGAATCTTTAAATTTTGCAT
GAGCAGATGGTTCAAGAAATTTTACAGGGAAGCCAGTCTGGTGGTTACGA
TTCCTAGATAATTCTTTCCTTAGgtagccttcttcttttcaaatagtttt
caaatATCCATATCTGCCTGACTTTCATCTTCTCTCTGTCTTCTCAAATT
GTTGTTGCCATTGCTATGGTACCTATACCGTACAGTGCACACAAATATTG
AAGACATACATCCAATTATCAAAAACTACCTGAAGAGAAGGACAACGAGC
AACTTATAAACAATAATCACTGTCAAGCAATCCACCAGCTTAGTGGCCAT
CAACATCTCAGCCTTTGATTTGGTAAACTGTCcaaatttcttgtttttat
caacaataattccttttgaagaattttccttTTCACTTTTACTTTCTTCG
TCACTTATATTGCTGGTAATTTCTTCCTGTGTCTTTTCTTCTTTAGATGC
AGGGAAATTACACAAGTCTTTGTAACACCAGTAAG
Run BLAST on NCBI

protein sequence of TCONS_00069868-protein

>TCONS_00069868-protein ID=TCONS_00069868-protein|Name=TCONS_00069868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MDSTHLCTLLTLGVVFFSTTSAQPYLRPSYPLKYQRSIPYEPGYEANPIR
WGKRNSLYQDTEDAGLWGKRQEELGEGLWGKRDIDDVRLYSKRVQLKPRQ
DPEIMTTNDISDLLERDNKAMVESLVKLRLDVDEALRHFNIVEIQEDKRQ
DLESAGLWG
Run BLAST on NCBI

transcript from alignment at scaffold_511:57679..59406+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069868 ID=TCONS_00069868|Name=TCONS_00069868|organism=Clytia hemisphaerica|type=transcript|length=1728bp|location=Sequence derived from alignment at scaffold_511:57679..59406+ (Clytia hemisphaerica)
GTTCGAACAGAGTGGTATAAAACGAAAGTAGAAACAGTCAGCTACCTATT
TTCTCTTCATTCTTCATTTTTGATAGATTTTCATATATATCGGTATAGAT
TTGTCAAATTGGTATCATGGATAGGTGAGTTATACTTCATTTTTCGTGCT
TCTACATTAAGCACACTAAGGGTACTACGAAACCCCATTGTTTCAATGGT
CTGGTTGGTTTACCATTTAGTACCATTTACAAGTGTGAGTTTTCTAAGAG
CTACAATATCTATAGGCTAGGAAAcacatctttattttgatgagCTCATG
GGGTGATGGGGCAAGTGAAAGAAATTGACGGTTTTCCTGATAGAGCATAT
CATCACTGGCTGGGGGACCAAAAAAGTGACGGGATTTCAAATTCTAGCAT
CTCCAACCAAAAAAGCCGTaacatctttcaaaaaaaaaaaactcaccaga
cttttattttttttcagtacaCATCTATGTACATTGCTGACATTAGGGGT
TGTCTTCTTTTCAACAACAAGCGCACAACCCTACCTACGACCCTCATATC
CACTCAAATATCAACGTTCAATACCATACGAGCCAGGGTATGAAGCAAAC
CCTATACGATGGGGAAAGAGAAACTCTCTTTACCAAGACACCGAAGATGC
TGGTCTTTGGGGGAAACGACAGGAAGAACTTGGTGAAGGGTTATGGGGCA
AGCGAGACATTGATGACGTCAGACTTTATAGTAAGCGAGTCCAACTGAAA
CCTCGACAGGATCCGGAAATAATGACAACGAATGATATTTCGGATTTGTT
AGAACGCGATAATAAAGCTATGGTAGAAAGCTTAGTGAAGTTGCGTCTCG
ATGTAGACGAGGCTTTAAGACATTTTAATATCGTAGAAATTCAAGAGGAT
AAAAGACAAGACCTCGAATCTGCTGGGTTATGGGGGTAAATGAATGCGAA
TATCTATTGGTCATAAGAGGTACATCCTATGAAGAGGAAAAGACAGCGAT
GGATGACTGTTGAGGCAACCTTTGGTTCGGACAGAATTTAGCTTGTCTAA
TATGCAATTAGAAATTTCTTACATATTTTtgttaaataaaataattcttc
tTTTGTATACTATGAAATATCACAATGATAGAAAAATCATTGCATCATGA
AAATCGCACAAGACATAAGTCAATAATAATGGAGAGTATTTGTTTGTAGT
CCCGCTCCTAAATTCACATTGCTAGAATCTTTAAATTTTGCATGAGCAGA
TGGTTCAAGAAATTTTACAGGGAAGCCAGTCTGGTGGTTACGATTCCTAG
ATAATTCTTTCCTTAGgtagccttcttcttttcaaatagttttcaaatAT
CCATATCTGCCTGACTTTCATCTTCTCTCTGTCTTCTCAAATTGTTGTTG
CCATTGCTATGGTACCTATACCGTACAGTGCACACAAATATTGAAGACAT
ACATCCAATTATCAAAAACTACCTGAAGAGAAGGACAACGAGCAACTTAT
AAACAATAATCACTGTCAAGCAATCCACCAGCTTAGTGGCCATCAACATC
TCAGCCTTTGATTTGGTAAACTGTCcaaatttcttgtttttatcaacaat
aattccttttgaagaattttccttTTCACTTTTACTTTCTTCGTCACTTA
TATTGCTGGTAATTTCTTCCTGTGTCTTTTCTTCTTTAGATGCAGGGAAA
TTACACAAGTCTTTGTAACACCAGTAAG

Coding sequence (CDS) from alignment at scaffold_511:57679..59406+

>TCONS_00069868 ID=TCONS_00069868|Name=TCONS_00069868|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_511:57679..59406+ (Clytia hemisphaerica)
ATGGATAGtacaCATCTATGTACATTGCTGACATTAGGGGTTGTCTTCTT
TTCAACAACAAGCGCACAACCCTACCTACGACCCTCATATCCACTCAAAT
ATCAACGTTCAATACCATACGAGCCAGGGTATGAAGCAAACCCTATACGA
TGGGGAAAGAGAAACTCTCTTTACCAAGACACCGAAGATGCTGGTCTTTG
GGGGAAACGACAGGAAGAACTTGGTGAAGGGTTATGGGGCAAGCGAGACA
TTGATGACGTCAGACTTTATAGTAAGCGAGTCCAACTGAAACCTCGACAG
GATCCGGAAATAATGACAACGAATGATATTTCGGATTTGTTAGAACGCGA
TAATAAAGCTATGGTAGAAAGCTTAGTGAAGTTGCGTCTCGATGTAGACG
AGGCTTTAAGACATTTTAATATCGTAGAAATTCAAGAGGATAAAAGACAA
GACCTCGAATCTGCTGGGTTATGGGGGTAAATGGATAGtacaCATCTATG
TACATTGCTGACATTAGGGGTTGTCTTCTTTTCAACAACAAGCGCACAAC
CCTACCTACGACCCTCATATCCACTCAAATATCAACGTTCAATACCATAC
GAGCCAGGGTATGAAGCAAACCCTATACGATGGGGAAAGAGAAACTCTCT
TTACCAAGACACCGAAGATGCTGGTCTTTGGGGGAAACGACAGGAAGAAC
TTGGTGAAGGGTTATGGGGCAAGCGAGACATTGATGACGTCAGACTTTAT
AGTAAGCGAGTCCAACTGAAACCTCGACAGGATCCGGAAATAATGACAAC
GAATGATATTTCGGATTTGTTAGAACGCGATAATAAAGCTATGGTAGAAA
GCTTAGTGAAGTTGCGTCTCGATGTAGACGAGGCTTTAAGACATTTTAAT
ATCGTAGAAATTCAAGAGGATAAAAGACAAGACCTCGAATCTGCTGGGTT
ATGGGGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043516XLOC_043516Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069868-proteinTCONS_00069868-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069868-exon-scaffold_511-1491911889:57679..57802TCONS_00069868-exon-scaffold_511-1491911889:57679..57802Clytia hemisphaericaexon
TCONS_00069868-exon-scaffold_511-1510915933:57679..57802TCONS_00069868-exon-scaffold_511-1510915933:57679..57802Clytia hemisphaericaexon
TCONS_00069868-exon-scaffold_511-1575043694:57679..57802TCONS_00069868-exon-scaffold_511-1575043694:57679..57802Clytia hemisphaericaexon
TCONS_00069868-exon-scaffold_511-1491911889:58146..59406TCONS_00069868-exon-scaffold_511-1491911889:58146..59406Clytia hemisphaericaexon
TCONS_00069868-exon-scaffold_511-1510915933:58146..59406TCONS_00069868-exon-scaffold_511-1510915933:58146..59406Clytia hemisphaericaexon
TCONS_00069868-exon-scaffold_511-1575043694:58146..59406TCONS_00069868-exon-scaffold_511-1575043694:58146..59406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:57679..59406 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0604319	0	0	0	0	0	0	0	0	0	0	0	0.890216	0.791457	0	0	1.20677	2.1135	2.50748	4.99625	25.9966	21.0174	1.08597	2.30987	0.555773	1.2741	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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