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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069860 ID=TCONS_00069860|Name=TCONS_00069860|organism=Clytia hemisphaerica|type=transcript|length=341bp
TCCGAACTCTGGAGAACGGATGATCACAGGTGCTTTATTATCAAAAAGCA
TCAAAGTCAAACGGCAGCGTGTGAGAGAGTCACTTGATAGAGTAAATCCA
AACAGACAATCATTGAGTAGAAGAATTACAAGAAGAGTCTGTAATGTTGC
TTCTCCAAATGCCTTATgGCATATGGATGGGTTTCATAAGATGATTCGTT
GGAGACTAGTCATCCATGGGTGTATAGATGGATACTCGCGTTTAATTACc
tttttgaattgctcaaacAATAACCGTGCTGATACAGTCCTAAATCTTTT
CATAGGCAGTTTGAATCGATTTCGTTGTCCTTTAAGAATTC Run BLAST on NCBI protein sequence of TCONS_00069860-protein >TCONS_00069860-protein ID=TCONS_00069860-protein|Name=TCONS_00069860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
PNSGERMITGALLSKSIKVKRQRVRESLDRVNPNRQSLSRRITRRVCNVA
SPNALWHMDGFHKMIRWRLVIHGCIDGYSRLITFLNCSNNNRADTVLNLF
IGSLNRFRCPLRI Run BLAST on NCBI transcript from alignment at scaffold_510:22458..25691- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069860 ID=TCONS_00069860|Name=TCONS_00069860|organism=Clytia hemisphaerica|type=transcript|length=3234bp|location=Sequence derived from alignment at scaffold_510:22458..25691- (Clytia hemisphaerica)
TCCGAACTCTGGAGAACGGATGATCACAGGTGCTTTATTATCAAAAAGCA
TCAAAGTCAAACGGCAGCGTGTGAGAGAGTCACTTGATAGAGTAAATCCA
AACAGACAATCATTGAGTAGAAGAATTACAAGAAGAGTCTGTAATGTTGC
TTCTCCAAATGCCTTATGGTGCTTGTTAATATTGAAAAGAAGTACTTCTG
GGAAGATATTTCAGTTAATTTACATTTATGAAAATCAGTCTGAGCTGGAT
GACATGCCAGTGTCCATAGTCCAGTGTGATATAGTCCAGGATGATCCCAG
TTCTTAGCCATTCTCATGGAAAATAATATGGCATAGTTGCCAAGTTTCAC
ATAGTGCTATACACACACTAAACTTTAGTAGGTAGAGAGGGAGGGGGAGG
GGGTGTCTTCTCGAAAGTGTATTCTTGGGAATCCCTAACCTCGGGAGGGG
TTAAAAGAAATACAGTCATAGTTTCATGGGGGTCAGGAACCCCCACCTTA
AATAATTAAACCCCCCTAAAGGACAGCCCGCCAGTATAAAAAATAAAATA
AAATATATACAATATATAAATTTTTGACGGACCCCCCTAGTTAGACAGTC
CTTTTACATACTTTTGCAATGGCCAAAGAGGTAATAGTTGTCAAGTACCT
TGCAATTTCAAGTTTTTTAAGTTAAATTAGAAAGCAAAAAACTAGAAAAG
TTGCACCACAGACAAAAATTTTCAAGAAACTTTGATGATTGCATAGTGTG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGTCTCTAATTT
TTTTTCAAATTTCGTAAGGGGGGTTGCCACTTAAGGGGTCTTCCTACCTA
AGGGGGTCTTGACCCCTCTAGAATCTATGGCATCCGGTAGGGTGTGGCGT
CAAAACCCAAAGTCATAAAATTTCAAGATGTAGTATTTTTTTGCGAAAAT
TTAACCTGTTGTAAGCCATTTTGCACAGTTTTTAAGGCCAGAGAATTCCA
AAATTGGTTGATTGCACCTGGGGGTACCGATTTACACTCAAAAATAGTGA
AGAATGGCAATTTTCGGTCTTTTTCAGCCCTAAAATATGCTAAAAACATC
TCCAATCAAAGACAAAGCAAAAAAAGTTGAATGGAAGTCATAATTAGCTC
AAGAAATGTAAAAACGAGCTATTTTTGGCCAATTTTTTTTTTTGGGGGGG
GGGCAAACGCAAAAAGAATGCATTTTCGAACTTAATCCGGGTACTGACCT
TGATGACAATGGACCCTGTCAGATACTGATTTTTGAAATTTGGTGATTTT
GGAACCTTGTCAGAGACTTTCAGAGGGTGAAAAAGGGACCCTAACCTGCC
CTAACCAGTGGCACGCCTCCGTACCCATTTAACCCTATTTTTATCAGGGG
GTGGATTCCACCACGACGGCGTTCTTTTGGTAATAGCTCAGTGAAAAAAA
AAATTTCATGTTCTGAAACTTTGTGACTTTTAGTATAATCATATTACAAA
CATGTATACCGATTTCCGTGATCATAGAAATAGTATATCGGGTTTTATGG
CTTTATCGTGACGAGACAACATAAAACCCAGCTAAAACCTTGTAAAACCT
CAAAATCTCAAAATTGGCATAACTTTTGATATAGTTATCCAAATGACTTC
AAATTTTGACGGGTTTTAGATATTAATTAGTACTTTTAAAATTTTTCAAA
AAAATTTCATGAAAATGATGACGTCATCAATAATGACGTCATAATTTTTC
GAAAATTTTGCTCATCTTCAGCATGGATTTTAACTTCAATTTTAATGTTA
AATTAAAAACCGGCANAAAATTTCATGAAAATGATGACGTCATCAATAAT
GACGTCATAATTTTTCGAAAATTTTGCTCATCTTCAGCATGGATTTTAAC
TTCAATTTTAATGTTAGATTAAAAACCGGCAAATATGTTGAAGATATACC
CTTTGGCTTTCAGAAAATCAAAACAGAACTGAAAAACCTTGCTTTGTTCG
AATTTGAATGCCATTTTAGTAAAGGGTACTTTTTAACTGGTCAGCGGTAG
GCGAAAACTTTGTGATGACGTCATTGCATGTATGATGACGTCACGAACTT
GAAATTTTTCCCACGAGTTCCTATTATGGTAGTGAACATTCCTGCCAAGT
TTCATGTTCATGACACATCTAGATCAAAAGTTATGGCCGTGTGGTGGATT
CCACCCCCTGATAATACCAAACTCAAAAAAGCTTGATAATAATAGGGTTA
AGCCTGAGTGCCTAGGAAAGTTTTATGTGCTTTTATTATGGATTTTCTTT
CACNCCCCCTGATAATACCAAACTCAAAAAAGCTTGATAATAATAGGGTT
AAGCCTGAGTGCCTAGGAAAGTTTTATGTGCATTTATTATGGATTTTCTT
TCATATTTTAGGCATATGGATGGGTTTCATAAGATGATTCGTTGGAGACT
AGTCATCCATGGGTGTATAGATGGATACTCGCGTTTAATTACCTTTTTGA
ATTGCTCAAACAATAACCGTGCTGATACAGTCCTAAATCTTTTCATAGGC
AGTTTGAATCGATTTCGTTGTCCTTTAAGAATTC Coding sequence (CDS) from alignment at scaffold_510:22458..25691- >TCONS_00069860 ID=TCONS_00069860|Name=TCONS_00069860|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_510:22458..25691- (Clytia hemisphaerica)
GCATATGGATGGGTTTCATAAGATGATTCGTTGGAGACTAGTCATCCATG
GGTGTATAGATGGATACTCGCGTTTAATTACCTTTTTGAATTGCTCAAAC
AATAACCGTGCTGATACAGTCCTAAATCTTTTCATAGGCAGTTTGAATCG
ATTTCGTTGTCCTTTAAGAATTCCGAACTCTGGAGAACGGATGATCACAG
GTGCTTTATTATCAAAAAGCATCAAAGTCAAACGGCAGCGTGTGAGAGAG
TCACTTGATAGAGTAAATCCAAACAGACAATCATTGAGTAGAAGAATTAC
AAGAAGAGTCTGTAATGTTGCTTCTCCAAATGCCTTATGGCATATGGATG
GGTTTCATAAGATGATTCGTTGGAGACTAGTCATCCATGGGTGTATAGAT
GGATACTCGCGTTTAATTACCTTTTTGAATTGCTCAAACAATAACCGTGC
TGATACAGTCCTAAATCTTTTCATAGGCAGTTTGAATCGATTTCGTTGTC
CTTTAAGAATTCCGAACTCTGGAGAACGGATGATCACAGGTGCTTTATTA
TCAAAAAGCATCAAAGTCAAACGGCAGCGTGTGAGAGAGTCACTTGATAG
AGTAAATCCAAACAGACAATCATTGAGTAGAAGAATTACAAGAAGAGTCT
GTAATGTTGCTTCTCCAAATGCCTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069860-exon-scaffold_510-1575043694:25524..25691 | TCONS_00069860-exon-scaffold_510-1575043694:25524..25691 | Clytia hemisphaerica | exon |
| TCONS_00069860-exon-scaffold_510-1575043694:22458..22630 | TCONS_00069860-exon-scaffold_510-1575043694:22458..22630 | Clytia hemisphaerica | exon |
| TCONS_00069860-exon-scaffold_510-1510915933:25524..25691 | TCONS_00069860-exon-scaffold_510-1510915933:25524..25691 | Clytia hemisphaerica | exon |
| TCONS_00069860-exon-scaffold_510-1510915933:22458..22630 | TCONS_00069860-exon-scaffold_510-1510915933:22458..22630 | Clytia hemisphaerica | exon |
| TCONS_00069860-exon-scaffold_510-1491911889:25524..25691 | TCONS_00069860-exon-scaffold_510-1491911889:25524..25691 | Clytia hemisphaerica | exon |
| TCONS_00069860-exon-scaffold_510-1491911889:22458..22630 | TCONS_00069860-exon-scaffold_510-1491911889:22458..22630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_510 | supercontig | scaffold_510:22458..25691 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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