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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069857 ID=TCONS_00069857|Name=TCONS_00069857|organism=Clytia hemisphaerica|type=transcript|length=1016bp
cTTTGTTGTTTATTGAGATTGAGAGTCCGTTTGTTACCCATGGGCTTTGT
TTGATGCGTTTGCGACTGTTTTTAATGGTTTTGGTtggagtatttttgtc
aatcacatcattagttttttgaatCAACACTTTCATTTTCTGATCAAGAC
TTTTGTCCCTAAAATTTTCATCCCAGTCAATATTTAAGAAATCTAGGATG
AGGTTTTCACTATCATAGTTTTTATAATCTTTGAAAGTTGTTTTTCTTGG
TGGTTTGACTTTTTTGTGTGTCTTTATTTCATTTGTTAGTAAGATTTGAG
GTAAATGGTCTGAGATAGCGCTGACAATATTCCCTGAAATAAAATCATCC
CCCatataatttgaaaatatattatcAATGAGCGTCTTGCTGTGGGGTGT
TATTCTGGTAGGCCTGATGATAAAAGGTTTGAGGCAAGCCGATAAATTTT
GTTCGAGAAAGTCATGAGTCTCCTGATGTGAGTCAGATTTTAACAAGTCA
ATATTAAAGTCACCCATTaagtaagtttttttattttcattagaaatttt
ttcaagtgttttagtatagaaagttttaaaatctgACATAGTCATGTTTG
GGTGTTTGTAGATGCAGCCTACGATTGTGTTGGATTCCGCATTGTCAATt
atttcaacaaattttgatTCTGTTTTTCCACTAATTATTATGTCAAGATC
CGGACGAGGTTGAAAACTTATGCCCTTTTTAACGTAGATTCTAACACCTC
CCTTGGAGGCTTCAGTGAAACAGTCTGCAGGTTTATAGCCGGCCAGGCTA
AGTGGATTGTCTCCATTTTTTAGTCCAGTTTCAGTAATtccaataaaatg
aaaatctatatCACATTGGAGAAGTAATTGTTTTAGTTCTGTGAAATGTA
GGTTCAATGATGCAATATTTAAAtgcagaaaataatttttgaaattttta
ttttttaaggtaGTTTTGAGATCTGGAGTTGTATAATATTTACAAGTGTG
TAATAGTGGATTTTCA Run BLAST on NCBI protein sequence of TCONS_00069857-protein >TCONS_00069857-protein ID=TCONS_00069857-protein|Name=TCONS_00069857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
ENPLLHTCKYYTTPDLKTTLKNKNFKNYFLHLNIASLNLHFTELKQLLLQ
CDIDFHFIGITETGLKNGDNPLSLAGYKPADCFTEASKGGVRIYVKKGIS
FQPRPDLDIIISGKTESKFVEIIDNAESNTIVGCIYKHPNMTMSDFKTFY
TKTLEKISNENKKTYLMGDFNIDLLKSDSHQETHDFLEQNLSACLKPFII
RPTRITPHSKTLIDNIFSNYMGDDFISGNIVSAISDHLPQILLTNEIKTH
KKVKPPRKTTFKDYKNYDSENLILDFLNIDWDENFRDKSLDQKMKVLIQK
TNDVIDKNTPTKTIKNSRKRIKQSPWVTNGLSISINNK Run BLAST on NCBI transcript from alignment at scaffold_51:213276..214291 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069857 ID=TCONS_00069857|Name=TCONS_00069857|organism=Clytia hemisphaerica|type=transcript|length=1016bp|location=Sequence derived from alignment at scaffold_51:213276..214291 (Clytia hemisphaerica)
TGAAAATCCACTATTACACACTTGTAAATATTATACAACTCCAGATCTCA
AAACtaccttaaaaaataaaaatttcaaaaattattttctgcaTTTAAAT
ATTGCATCATTGAACCTACATTTCACAGAACTAAAACAATTACTTCTCCA
ATGTGatatagattttcattttattggaATTACTGAAACTGGACTAAAAA
ATGGAGACAATCCACTTAGCCTGGCCGGCTATAAACCTGCAGACTGTTTC
ACTGAAGCCTCCAAGGGAGGTGTTAGAATCTACGTTAAAAAGGGCATAAG
TTTTCAACCTCGTCCGGATCTTGACATAATAATTAGTGGAAAAACAGAat
caaaatttgttgaaataATTGACAATGCGGAATCCAACACAATCGTAGGC
TGCATCTACAAACACCCAAACATGACTATGTcagattttaaaactttcta
tactaaaacacttgaaaaaatttctaatgaaaataaaaaaacttacttAA
TGGGTGACTTTAATATTGACTTGTTAAAATCTGACTCACATCAGGAGACT
CATGACTTTCTCGAACAAAATTTATCGGCTTGCCTCAAACCTTTTATCAT
CAGGCCTACCAGAATAACACCCCACAGCAAGACGCTCATTgataatatat
tttcaaattatatGGGGGATGATTTTATTTCAGGGAATATTGTCAGCGCT
ATCTCAGACCATTTACCTCAAATCTTACTAACAAATGAAATAAAGACACA
CAAAAAAGTCAAACCACCAAGAAAAACAACTTTCAAAGATTATAAAAACT
ATGATAGTGAAAACCTCATCCTAGATTTCTTAAATATTGACTGGGATGAA
AATTTTAGGGACAAAAGTCTTGATCAGAAAATGAAAGTGTTGattcaaaa
aactaatgatgtgattgacaaaaatactccaACCAAAACCATTAAAAACA
GTCGCAAACGCATCAAACAAAGCCCATGGGTAACAAACGGACTCTCAATC
TCAATAAACAACAAAg Coding sequence (CDS) from alignment at scaffold_51:213276..214291 >TCONS_00069857 ID=TCONS_00069857|Name=TCONS_00069857|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_51:213276..214291 (Clytia hemisphaerica)
GAAAATCCACTATTACACACTTGTAAATATTATACAACTCCAGATCTCAA
AACtaccttaaaaaataaaaatttcaaaaattattttctgcaTTTAAATA
TTGCATCATTGAACCTACATTTCACAGAACTAAAACAATTACTTCTCCAA
TGTGatatagattttcattttattggaATTACTGAAACTGGACTAAAAAA
TGGAGACAATCCACTTAGCCTGGCCGGCTATAAACCTGCAGACTGTTTCA
CTGAAGCCTCCAAGGGAGGTGTTAGAATCTACGTTAAAAAGGGCATAAGT
TTTCAACCTCGTCCGGATCTTGACATAATAATTAGTGGAAAAACAGAatc
aaaatttgttgaaataATTGACAATGCGGAATCCAACACAATCGTAGGCT
GCATCTACAAACACCCAAACATGACTATGTcagattttaaaactttctat
actaaaacacttgaaaaaatttctaatgaaaataaaaaaacttacttAAT
GGGTGACTTTAATATTGACTTGTTAAAATCTGACTCACATCAGGAGACTC
ATGACTTTCTCGAACAAAATTTATCGGCTTGCCTCAAACCTTTTATCATC
AGGCCTACCAGAATAACACCCCACAGCAAGACGCTCATTgataatatatt
ttcaaattatatGGGGGATGATTTTATTTCAGGGAATATTGTCAGCGCTA
TCTCAGACCATTTACCTCAAATCTTACTAACAAATGAAATAAAGACACAC
AAAAAAGTCAAACCACCAAGAAAAACAACTTTCAAAGATTATAAAAACTA
TGATAGTGAAAACCTCATCCTAGATTTCTTAAATATTGACTGGGATGAAA
ATTTTAGGGACAAAAGTCTTGATCAGAAAATGAAAGTGTTGattcaaaaa
actaatgatgtgattgacaaaaatactccaACCAAAACCATTAAAAACAG
TCGCAAACGCATCAAACAAAGCCCATGGGTAACAAACGGACTCTCAATCT
CAATAAACAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069857-exon-scaffold_51-1491911889:213276..214291 | TCONS_00069857-exon-scaffold_51-1491911889:213276..214291 | Clytia hemisphaerica | exon |
| TCONS_00069857-exon-scaffold_51-1510915933:213276..214291 | TCONS_00069857-exon-scaffold_51-1510915933:213276..214291 | Clytia hemisphaerica | exon |
| TCONS_00069857-exon-scaffold_51-1575043694:213276..214291 | TCONS_00069857-exon-scaffold_51-1575043694:213276..214291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_51 | supercontig | scaffold_51:213276..214291 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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