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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069841 ID=TCONS_00069841|Name=TCONS_00069841|organism=Clytia hemisphaerica|type=transcript|length=2639bp
CCTGCATGCAACTGAGAGCTGATTGTTTGAATGGATATTaaagtgaatta
aaatgaagatttcaaACCTTTGTAAGGATGTTATTAAATTGATTGTGAAC
AAGGGCGACGTTTTACGCTCAAAATAGTTTGTAGATTTGGACCAATATGT
TTGTGAGCTAAATCAACAAGTTAATAATTATCAAGATGAGGCAAATCACA
AACAAAAGGATTTGGCATTATTGCCAAACATTCTATTTTTTGACCCTTTT
GAGCAACTCAAAGACTCTGAATTTTTTTACTTCATATTGCAAAGAAGATA
CTGGGAAAAATGTACCATTAGACCCATCACTAGGAACAGAATGGGAATAT
GGTGAATCATCAGGCAAAGAACCTAGATTGACTTGGGACATATTTTGGTA
TTGTGCTCTAGTTGGTAAGGTAACCAAGTGTTGTAGTGGGCATTCAATTA
CATCGTATCACCCTGGAATTTTGCAACAAATTTCAAACTACCCATTCTTA
CTTTCTCACAAGCGTGGAATGACTAAGTCAACATTTGACCTGATAATCCG
TTTAGTTGAACAAGGCAACAATTTTAGCAGCATTGAAAGTATATTTCTTA
GCAGTATCGTCGATATCGTCCATCGAAAACTAGCTCTAATCAACAACACC
AACATGCAGACATCTATTGAATTCATTGAACAACTGAAGCTGTTTACTCC
ATCACATGATTTTATCActtcttgttttgttttcaattttgataactACA
AAGATGTTTATCTTTCTGAAATGGATAAACTCACCTTCATTTGGCTTTCA
GGAGACCACACGTTTCGTGTGGCTGCGAATATAGGCATGTACAAAGACAG
AAGGTGGATCAAACTGTTTGACTCTTTATTTTGTGTTCTCAATGAAAAAG
GTCAGGTAATGGGTTTCAGACTGGTTAAAGGAACTAAATTTGACCTTGTT
TATGACATTTTCAAACAACTGGCTGAGAAAGGAACCACGCCACACTTTAT
TATCATTGACAACTGTTGTTTATGGGTAAACAAATTGAATGAATTATTCC
CTGGTGTTGCTGTTAAACTAGATCTGTTTCATGCCATAGCGAGATTAACC
GGACAGGTTTAAAAAAAACACCCATTGTTTTTTGACTTTGTAAAAGAACT
GGGACTAATATTCCGAGAAATTTCAGATTTTGGAGAGGTAAGGAAATTGC
CTACTCCAAAGCCAAATGTGATTTTAGAAAATCTTGAAAGGTTCATCTTG
AAATGGTCAGATGTCAGTTTCAAAGGTTGGTTTATTCTGACTCCATCCTT
TAGTATGGAAATTGAAAAGCTTAAGAAACATATTAACTTAGGGTGTTGCT
CTGATATTCCACCTGGTGGTGGCACAAACAAAAATGAAAATCTACATAAA
CAGCTGAAAAGCTTAGTTTGTAGAGGAAAAATGAAAACTGAGACGGCAAC
TGCAATTTTCTCTCATTTGTTTTACATCCACAATTCTAAGAAGAATGGGG
AAAAGTATGTACACCCTATATTCTCTAAGGGTGAACCAAGAACGTTGCCG
GGAAGTGCATCCACGTTGGTCATCAATAAAGATAACAAAGGAAATAATGT
AGCCGTTCTTGCTGAAGACATATTGGAGGTGGATTCAGATCGAAAAGATA
ATGCACAAGAACAAATTAGTTGTGTTTCAAAGATGGTAGTGGTGTTAGGA
tctgttttggaaaaaatcaatgCTATGATCCCAAAAGATCTTTCAAGTCG
ACTTTACCGATATCAAGGTTTCACTACACTCATCACTGAAATATGGAACC
CACTTACATTTTTTCAGGCTGCGAGAAAAATGGAGTCTTTTCCAGCAATT
GCTGAAGTTTTAAAGCTAATGAATCTGCACATTATTGAAACAGCAGCTGA
CGATTGCAATGATAGTTTTCTTTTTACCATCTTCAAAGCATTGAAAGGTC
ACAACCTTAAATGTGAAATGGATATTGAATTGAAACCTACATTTGAAGAA
AGCCGGGAAGAAATTATCCACGCTCTTTTGCATGAGGCCAACGGTGTCCG
CTGTTTCTTGTATGACAGTCTAATTGAAAGTGATGAAGGTAATTGTACAA
CATTTCTATCAGAAAATAAACTGCAGTTTCTTCAATGTGTGCTTCCTCTG
ATTGCTGCAAATGCCTTTTCTCTCCCTATTTTGGTGTTACCTTCGTGTCA
TGGAATGCCCATGTTTCCCATCTTACCTGAGGAAATAAGTAATAagttga
tatttgttttttatgaCATAACCATGTCTTCATATCATTTGCTAACCAAA
CATGACCCTGGAAAATCCAGAGCCTTTTGTCGTTGTGGCACAAGAATCAA
AAAGAAAGATGGCAAGTCAGAACCACGCTGTATCAATACATTTATGTGTT
CttgcaaaaaagaaaatgtgCCGTGCTCAAGTAAATGTACTTGTCGGAAC
TGCGACAATGCAAAGACACCACTTCAAGAGGAAAcgaaacagaaaagaag
aaaaaggtcacaatactttctttcaaaatcatCAGTAAATGAAATTGATC
ATCAATCATCAACATCACATATTAATGGAATGCATCACTACATTCTGGAA
GCCTGTTTACATTTAATGTTGAAGGAAATGCACTGTGAC Run BLAST on NCBI transcript from alignment at scaffold_51:126268..131690- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069841 ID=TCONS_00069841|Name=TCONS_00069841|organism=Clytia hemisphaerica|type=transcript|length=5423bp|location=Sequence derived from alignment at scaffold_51:126268..131690- (Clytia hemisphaerica)
CCTGCATGCAACTGAGAGCTGATTGTTTGAATGGATATTAAAGTGAATTA
AAATGAAGATTTCAAACCTTTGTAAGGATGTTATTAAATTGATTGTGAAC
AAGGGCGACGTTTTACGCTCAAAATAGTTTGTAGATTTGGACCAATATGT
TTGTGAGCTAAATCAACAAGTTAATAATTATCAAGATGAGGCAAATCACA
AACAAAAGGATTTGGCATTATTGCCAAACATTCTATTTTTTGACCCTTTT
GAGCAACTCAAAGACTCTGAATTTTTTTACTTCATATTGCAAAGAAGATA
CTGGGAAAAATGTACCATTAGACCCATCACTAGGAACAGAATGGGAATAT
GGTGAATCATCAGGCAAAGAACCTAGATTGACTTGGGACATATTTTGGTA
TTGTGCTCTAGTTGGTAAGGTAACCAAGTGTTGTAGTGGGCATTCAATTA
CATCGTATCACCCTGGAATTTTGCAACAAATTTCAAACTACCCATTCTTA
CTTTCTCACAAGCGTGGAATGACTAAGTCAACATTTGACCTGATAATCCG
TTTAGTTGAACAAGGCAACAATTTTAGCAGCATTGAAAGTATATTTCTTA
GCAGTATCGTCGATATCGTCCATCGAAAACTAGCTCTAATCAACAACACC
AACATGCAGACATCTATTGAATTCATTGAACAACTGAAGCTGTTTACTCC
ATCACATGATTTTATCACTTCTTGTTTTGTTTTCAATTTTGATAACTACA
AAGATGTTTATCTTTCTGAAATGGATAAACTCACCTTCATTTGGCTTTCA
GGAGACCACACGTTTCGTGTGGCTGCGAATATAGGTAAGTAGCAAAAGTT
ACAAAGAAAGGGGTAGCATTTTCACATTGGGGGATGCCAAGAAGGGGGGT
ACGGAAAAGTGGTTTGTCGGTTTCAGCCTTATTTTTGTCGGTTATCGGTG
AACGGAAAACATTACGGTGTCGGTGATTGAGCTTTTTTGATCGGTTAATC
GGTGAGTGGATCGATATTCAAGCGGTTTTCGGTGACAAGTTAAGTATAAT
GGTTTTGGAGAAATAAATTATCCCAAGAATCAAAAAGTAAATTAACTACT
ACATGTAATTTTTCTTTGCTCGCTTCGCTTGCATAAAATACTGTATCAGT
GACCAATTGAGTCTTTCAGATTTCAAGAGTGCATAAATGACCTTTGTTAC
AGGAAAACTTGGAATAATTCTGCTAGATTTAGTAGCAGTATTGGGGAACT
GCCAGCGGCGGCTGATTTTTCTATGGAGGGGGACAAGGGGCACCAAAAGG
CGCCTCTGACATAGGGTCCACCCCCCAGAGATTTGGGGGTACCTAAAAAA
AAAAATTCTAAACTTTAAGGGGTACCTGGAAGTATTCCCAAATTTAGGGG
GTATCTGATATATTTGGGGGTACCTGTAATCTCGTAAGTGGGGGCGGGGG
CTGTTCTTTCTGTATGAAGTATTTTCCTTGACTCAACCAATTTTCCAATT
TTCAATCAAACTTTTCATTGAGAAGACTTTATAACTTATGTCTTTCCCTT
TTCATCCAGTTTTCTTCTCTTACATTGACAAATGAGCAGAAAATCCTTTA
TATTGCATTTAACAATAAAAAAGGGGGTAACTCAAAGTTGGGGGGCTAAG
TTTAGAATTCTAAAAATTTTGGGGGTACCAAAATGATTGGGGGTACCTGA
ACCCTGGAGGACCCTATGTCTGATTGCTAATTTTGGCGCCCCTTTGCTGT
TATAAACCCTAAAATTAGCAGTTTTCAGCCAAAAAGAGGAAAAATATCCA
AAAATTTCGCTGATTTCCGCTGATTTCGCTTGCGTAAGCTTTCCAAATAT
CTTTTTCTTAACTCTTTAAAATTACTTCCTTACTTTGCCCAAATATTGGT
TGATCAACCACGCTACTGTTTAGCAGCCCCAAAAAGATGCTCTTTCTAGG
CACCAAATCTTAGAGATCTCAATCAATCAATATTAGGCTATGCTCATCCT
CTAAGGAAAAGGTTTCTTATATGATCCCTATATGATGCAGAATAGACGTC
TGCGAAAAAGAATAATACAATCAAAATAAGTCTGTTAATGTTTTTTCAAC
ATTCTCGACTGGACCCAACTTTTCTTTACCTTTGAATTGTAGAGTCAATT
TAGTGAATGCTTTGGGCAGAAAACCGTTGACTCGTTAATCGTTAATCAGG
GACTGCGCCTTGTGAAGAAAACAAGAATTTTTTAAATTAAAGACCAAGGG
CATCATTTTGGGGCAAATTGAGTCTGAAACAGGGCTATTTTGAGCACATT
AGGGAGTCAAAATCCAAAATTTCCTCCTCCTTAGTTTGGCCACTTTACTA
TCAAAATCAAGGGAAGGGCCCTGTTGATCTGATTCATTAGATGATAGATC
TTTTTAAGCCACGGTCTTAAGGAATTTTTAAAACTGAAAAGTTTCATGTC
AGCGCAAACTCTGTTTGCGCCTTTCCTTACCAATACTAGATATTTGACAA
CTATTTGCCATCATACGCATCATATATCATAACTTAATTATTAGCAGCTC
AAGACTTCATAGCCATGTATACAATGATGCTAGTATTTGAAGGGAAACTG
AACGGCTGAACGGCCCGCTGAACACCACGGATGCCAAACTTATGGTTTTC
AACTCAAAAAATTATTTTAGGCAAAGTGGCTTTGGATGGGGTCCATATCA
ACTCCAATATCAATGATTAAAAAAGGCTTCTGGAGCAAGAAGGAAAAATC
GGTGTCGGTGAAAAGGATAAATTCTGTCGGTTTATCGGTGAGAGTAGAGC
AATTTTTGAGCGGTTTATCGGTTTTCGAAAGTCCTGTACGCCCCCCTTAC
AAGAAGAGGGTCCTGAGGGGGGGGGGTTTCCGGACCCCCAGGAAACTATG
TTTTCCTAAGAAATCTCACCACAGCAAATGTGCTGCCAAAATTTTGTATA
TAATCCAAGATGGCGGACAAAAAGCGAAAAGGTCCATGTAATATGATATT
TTTATATATCTTTTTCTAAATTCCCTTTACAGGCATGTACAAAGACAGAA
GGTGGATCAAACTGTTTGACTCTTTATTTTGTGTTCTCAATGAAAAAGGT
CAGGTAATGGGTTTCAGACTGGTTAAAGGAACTAAATTTGACCTTGTTTA
TGACATTTTCAAACAACTGGCTGAGAAAGGAACCACGCCACACTTTATTA
TCATTGACAACTGTTGTTTATGGGTAAACAAATTGAATGAATTATTCCCT
GGTGTTGCTGTTAAACTAGATCTGTTTCATGCCATAGCGAGATTAACCGG
ACAGGTTTAAAAAAAACACCCATTGTTTTTTGACTTTGTAAAAGAACTGG
GACTAATATTCCGAGAAATTTCAGATTTTGGAGAGGTAAGGAAATTGCCT
ACTCCAAAGCCAAATGTGATTTTAGAAAATCTTGAAAGGTTCATCTTGAA
ATGGTCAGATGTCAGTTTCAAAGGTTGGTTTATTCTGACTCCATCCTTTA
GTATGGAAATTGAAAAGCTTAAGAAACATATTAACTTAGGGTGTTGCTCT
GATATTCCACCTGGTGGTGGCACAAACAAAAATGAAAATCTACATAAACA
GCTGAAAAGCTTAGTTTGTAGAGGAAAAATGAAAACTGAGACGGCAACTG
CAATTTTCTCTCATTTGTTTTACATCCACAATTCTAAGAAGAATGGGGAA
AAGTATGTACACCCTATATTCTCTAAGGGTGAACCAAGAACGTTGCCGGG
AAGTGCATCCACGTTGGTCATCAATAAAGATAACAAAGGAAATAATGTAG
CCGTTCTTGCTGAAGACATATTGGAGGTGGATTCAGATCGAAAAGATAAT
GCACAAGAACAAATTAGTAAGTATTGTAAGAATGAATTAATTGTCTGTGT
GTCTGTCTGTCTGTCTGTTTGTCTGTCTGTGTGCATGTCCCAAAACTTTG
GGGCAGCCTGGAGACCTCAAAAATGGTCGGATTTGGCTGAAATTTTGCAC
ACTTGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTCAAAAT
TTTGATTATTAGAGCCTGGGATAAGTTTTTCACAGCTGCTACAATTGGGC
CTCTGAATAGTTGGAAAAATACTGAAGTTGAGCCCAGTGCGTTGCGCACG
TTCGACTATTTGAAGGGGGCATTCAAAAAAGTATGTTTGTCAGTTTTAGA
CCCCCTGCCCTCTTTATTTGCAGACTTTGATTTCAAACTACCCCTACATT
TGTTTTTTATCTCAAATTTATCCCCCCCCCCTTTGCCCAAAAAGGTTTTT
ACACTTTTTAATATTAAAATGTTTTCCAGTCTTCAAGTGGATAAAGCTAC
TTTGAATAAAGTGAATTGCAAAAACTGGGTAAAACGTCTATTTTCATCTG
CATCACTTTCGATGTTCTATTGCTAAAAATAATTCAAACTTTGATTTTAT
AGGTTGTGTTTCAAAGATGGTAGTGGTGTTAGGATCTGTTTTGGAAAAAA
TCAATGCTATGATCCCAAAAGATCTTTCAAGTCGACTTTACCGATATCAA
GGTTTCACTACACTCATCACTGAAATATGGAACCCACTTACATTTTTTCA
GGCTGCGAGAAAAATGGAGTCTTTTCCAGCAATTGCTGAAGTTTTAAAGC
TAATGAATCTGCACATTATTGAAACAGCAGCTGACGATTGCAATGATAGT
TTTCTTTTTACCATCTTCAAAGCATTGAAAGGTCACAACCTTAAATGTGA
AATGGATATTGAATTGAAACCTACATTTGAAGAAAGCCGGGAAGAAATTA
TCCACGCTCTTTTGCATGAGGCCAACGGTGTCCGCTGTTTCTTGTATGAC
AGTCTAATTGAAAGTGATGAAGGTAATTGTACAACATTTCTATCAGAAAA
TAAACTGCAGTTTCTTCAATGTGTGCTTCCTCTGATTGCTGCAAATGCCT
TTTCTCTCCCTATTTTGGTGTTACCTTCGTGTCATGGAATGCCCATGTTT
CCCATCTTACCTGAGGAAATAAGTAATAAGTTGATATTTGTTTTTTATGA
CATAACCATGTCTTCATATCATTTGCTAACCAAACATGACCCTGGAAAAT
CCAGAGCCTTTTGTCGTTGTGGCACAAGAATCAAAAAGAAAGATGGCAAG
TCAGAACCACGCTGTATCAATACATTTATGTGTTCTTGCAAAAAAGAAAA
TGTGCCGTGCTCAAGTAAATGTACTTGTCGGAACTGCGACAATGCAAAGA
CACCACTTCAAGAGGAAACGAAACAGAAAAGAAGAAAAAGGTCACAATAC
TTTCTTTCAAAATCATCAGTAAATGAAATTGATCATCAATCATCAACATC
ACATATTAATGGAATGCATCACTACATTCTGGAAGCCTGTTTACATTTAA
TGTTGAAGGAAATGCACTGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069841-exon-scaffold_51-1575043694:130857..131690 | TCONS_00069841-exon-scaffold_51-1575043694:130857..131690 | Clytia hemisphaerica | exon |
| TCONS_00069841-exon-scaffold_51-1575043694:127825..128658 | TCONS_00069841-exon-scaffold_51-1575043694:127825..128658 | Clytia hemisphaerica | exon |
| TCONS_00069841-exon-scaffold_51-1575043694:126268..127238 | TCONS_00069841-exon-scaffold_51-1575043694:126268..127238 | Clytia hemisphaerica | exon |
| TCONS_00069841-exon-scaffold_51-1510915933:130857..131690 | TCONS_00069841-exon-scaffold_51-1510915933:130857..131690 | Clytia hemisphaerica | exon |
| TCONS_00069841-exon-scaffold_51-1510915933:127825..128658 | TCONS_00069841-exon-scaffold_51-1510915933:127825..128658 | Clytia hemisphaerica | exon |
| TCONS_00069841-exon-scaffold_51-1510915933:126268..127238 | TCONS_00069841-exon-scaffold_51-1510915933:126268..127238 | Clytia hemisphaerica | exon |
| TCONS_00069841-exon-scaffold_51-1491911889:130857..131690 | TCONS_00069841-exon-scaffold_51-1491911889:130857..131690 | Clytia hemisphaerica | exon |
| TCONS_00069841-exon-scaffold_51-1491911889:127825..128658 | TCONS_00069841-exon-scaffold_51-1491911889:127825..128658 | Clytia hemisphaerica | exon |
| TCONS_00069841-exon-scaffold_51-1491911889:126268..127238 | TCONS_00069841-exon-scaffold_51-1491911889:126268..127238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_51 | supercontig | scaffold_51:126268..131690 - |
Blast
The following BLAST results are available for this feature:
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