TCONS_00069840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069840
Unique NameTCONS_00069840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069840 ID=TCONS_00069840|Name=TCONS_00069840|organism=Clytia hemisphaerica|type=transcript|length=2296bp
CTGCATGCAACTGAGAGCTGATTGTTTGAATGGATATTaaagtgaattaa
aatgaagatttcaaACCTTTGTAAGGATGTTATTAAATTGATTGTGAACA
AGGGCGACGTTTTACGCTCAAAATAGTTTGTAGATTTGGACCAATATGTT
TGTGAGCTAAATCAACAAGTTAATAATTATCAAGATGAGGCAAATCACAA
ACAAAAGGATTTGGCATTATTGCCAAACATTCTATTTTTTGACCCTTTTG
AGCAACTCAAAGACTCTGAATTTTTTTACTTCATATTGCAAAGAAGATAC
TGGGAAAAATGTACCATTAGACCCATCACTAGGAACAGAATGGGAATATG
GTGAATCATCAGGCAAAGAACCTAGATTGACTTGGGACATATTTTGGTAT
TGTGCTCTAGTTGGTAAGGTAACCAAGTGTTGTAGTGGGCATTCAATTAC
ATCGTATCACCCTGGAATTTTGCAACAAATTTCAAACTACCCATTCTTAC
TTTCTCACAAGCGTGGAATGACTAAGTCAACATTTGACCTGATAATCCGT
TTAGTTGAACAAGGCAACAATTTTAGCAGCATTGAAAGTATATTTCTTAG
CAGTATCGTCGATATCGTCCATCGAAAACTAGCTCTAATCAACAACACCA
ACATGCAGACATCTATTGAATTCATTGAACAACTGAAGCTGTTTACTCCA
TCACATGATTTTATCActtcttgttttgttttcaattttgataactACAA
AGATGTTTATCTTTCTGAAATGGATAAACTCACCTTCATTTGGCTTTCAG
GAGACCACACGTTTCGTGTGGCTGCGAATATAGGCATGTACAAAGACAGA
AGGTGGATCAAACTGTTTGACTCTTTATTTTGTGTTCTCAATGAAAAAGG
TCAGGTAATGGGTTTCAGACTGGTTAAAGGAACTAAATTTGACCTTGTTT
ATGACATTTTCAAACAACTGGCTGAGAAAGGAACCACGCCACACTTTATT
ATCATTGACAACTGTTGTTTATGGGTAAACAAATTGAATGAATTATTCCC
TGGTGTTGCTGTTAAACTAGATCTGTTTCATGCCATAGCGAGATTAACCG
GACAGGTTTAAAAAAAACACCCATTGTTTTTTGACTTTGTAAAAGAACTG
GGACTAATATTCCGAGAAATTTCAGATTTTGGAGAGGGTGAACCAAGAAC
GTTGCCGGGAAGTGCATCCACGTTGGTCATCAATAAAGATAACAAAGGAA
ATAATGTAGCCGTTCTTGCTGAAGACATATTGGAGGTGGATTCAGATCGA
AAAGATAATGCACAAGAACAAATTAGTTGTGTTTCAAAGATGGTAGTGGT
GTTAGGAtctgttttggaaaaaatcaatgCTATGATCCCAAAAGATCTTT
CAAGTCGACTTTACCGATATCAAGGTTTCACTACACTCATCACTGAAATA
TGGAACCCACTTACATTTTTTCAGGCTGCGAGAAAAATGGAGTCTTTTCC
AGCAATTGCTGAAGTTTTAAAGCTAATGAATCTGCACATTATTGAAACAG
CAGCTGACGATTGCAATGATAGTTTTCTTTTTACCATCTTCAAAGCATTG
AAAGGTCACAACCTTAAATGTGAAATGGATATTGAATTGAAACCTACATT
TGAAGAAAGCCGGGAAGAAATTATCCACGCTCTTTTGCATGAGGCCAACG
GTGTCCGCTGTTTCTTGTATGACAGTCTAATTGAAAGTGATGAAGGTAAT
TGTACAACATTTCTATCAGAAAATAAACTGCAGTTTCTTCAATGTGTGCT
TCCTCTGATTGCTGCAAATGCCTTTTCTCTCCCTATTTTGGTGTTACCTT
CGTGTCATGGAATGCCCATGTTTCCCATCTTACCTGAGGAAATAAGTAAT
AagttgatatttgttttttatgaCATAACCATGTCTTCATATCATTTGCT
AACCAAACATGACCCTGGAAAATCCAGAGCCTTTTGTCGTTGTGGCACAA
GAATCAAAAAGAAAGATGGCAAGTCAGAACCACGCTGTATCAATACATTT
ATGTGTTCttgcaaaaaagaaaatgtgCCGTGCTCAAGTAAATGTACTTG
TCGGAACTGCGACAATGCAAAGACACCACTTCAAGAGGAAAcgaaacaga
aaagaagaaaaaggtcacaatactttctttcaaaatcatCAGTAAATGAA
ATTGATCATCAATCATCAACATCACATATTAATGGAATGCATCACTACAT
TCTGGAAGCCTGTTTACATTTAATGTTGAAGGAAATGCACTGTGAC
Run BLAST on NCBI

protein sequence of TCONS_00069840-protein

>TCONS_00069840-protein ID=TCONS_00069840-protein|Name=TCONS_00069840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MVVVLGSVLEKINAMIPKDLSSRLYRYQGFTTLITEIWNPLTFFQAARKM
ESFPAIAEVLKLMNLHIIETAADDCNDSFLFTIFKALKGHNLKCEMDIEL
KPTFEESREEIIHALLHEANGVRCFLYDSLIESDEGNCTTFLSENKLQFL
QCVLPLIAANAFSLPILVLPSCHGMPMFPILPEEISNKLIFVFYDITMSS
YHLLTKHDPGKSRAFCRCGTRIKKKDGKSEPRCINTFMCSCKKENVPCSS
KCTCRNCDNAKTPLQEETKQKRRKRSQYFLSKSSVNEIDHQSSTSHINGM
HHYILEACLHLMLKEMHCD
Run BLAST on NCBI

transcript from alignment at scaffold_51:126268..131689-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069840 ID=TCONS_00069840|Name=TCONS_00069840|organism=Clytia hemisphaerica|type=transcript|length=5422bp|location=Sequence derived from alignment at scaffold_51:126268..131689- (Clytia hemisphaerica)
CTGCATGCAACTGAGAGCTGATTGTTTGAATGGATATTAAAGTGAATTAA AATGAAGATTTCAAACCTTTGTAAGGATGTTATTAAATTGATTGTGAACA AGGGCGACGTTTTACGCTCAAAATAGTTTGTAGATTTGGACCAATATGTT TGTGAGCTAAATCAACAAGTTAATAATTATCAAGATGAGGCAAATCACAA ACAAAAGGATTTGGCATTATTGCCAAACATTCTATTTTTTGACCCTTTTG AGCAACTCAAAGACTCTGAATTTTTTTACTTCATATTGCAAAGAAGATAC TGGGAAAAATGTACCATTAGACCCATCACTAGGAACAGAATGGGAATATG GTGAATCATCAGGCAAAGAACCTAGATTGACTTGGGACATATTTTGGTAT TGTGCTCTAGTTGGTAAGGTAACCAAGTGTTGTAGTGGGCATTCAATTAC ATCGTATCACCCTGGAATTTTGCAACAAATTTCAAACTACCCATTCTTAC TTTCTCACAAGCGTGGAATGACTAAGTCAACATTTGACCTGATAATCCGT TTAGTTGAACAAGGCAACAATTTTAGCAGCATTGAAAGTATATTTCTTAG CAGTATCGTCGATATCGTCCATCGAAAACTAGCTCTAATCAACAACACCA ACATGCAGACATCTATTGAATTCATTGAACAACTGAAGCTGTTTACTCCA TCACATGATTTTATCACTTCTTGTTTTGTTTTCAATTTTGATAACTACAA AGATGTTTATCTTTCTGAAATGGATAAACTCACCTTCATTTGGCTTTCAG GAGACCACACGTTTCGTGTGGCTGCGAATATAGGTAAGTAGCAAAAGTTA CAAAGAAAGGGGTAGCATTTTCACATTGGGGGATGCCAAGAAGGGGGGTA CGGAAAAGTGGTTTGTCGGTTTCAGCCTTATTTTTGTCGGTTATCGGTGA ACGGAAAACATTACGGTGTCGGTGATTGAGCTTTTTTGATCGGTTAATCG GTGAGTGGATCGATATTCAAGCGGTTTTCGGTGACAAGTTAAGTATAATG GTTTTGGAGAAATAAATTATCCCAAGAATCAAAAAGTAAATTAACTACTA CATGTAATTTTTCTTTGCTCGCTTCGCTTGCATAAAATACTGTATCAGTG ACCAATTGAGTCTTTCAGATTTCAAGAGTGCATAAATGACCTTTGTTACA GGAAAACTTGGAATAATTCTGCTAGATTTAGTAGCAGTATTGGGGAACTG CCAGCGGCGGCTGATTTTTCTATGGAGGGGGACAAGGGGCACCAAAAGGC GCCTCTGACATAGGGTCCACCCCCCAGAGATTTGGGGGTACCTAAAAAAA AAAATTCTAAACTTTAAGGGGTACCTGGAAGTATTCCCAAATTTAGGGGG TATCTGATATATTTGGGGGTACCTGTAATCTCGTAAGTGGGGGCGGGGGC TGTTCTTTCTGTATGAAGTATTTTCCTTGACTCAACCAATTTTCCAATTT TCAATCAAACTTTTCATTGAGAAGACTTTATAACTTATGTCTTTCCCTTT TCATCCAGTTTTCTTCTCTTACATTGACAAATGAGCAGAAAATCCTTTAT ATTGCATTTAACAATAAAAAAGGGGGTAACTCAAAGTTGGGGGGCTAAGT TTAGAATTCTAAAAATTTTGGGGGTACCAAAATGATTGGGGGTACCTGAA CCCTGGAGGACCCTATGTCTGATTGCTAATTTTGGCGCCCCTTTGCTGTT ATAAACCCTAAAATTAGCAGTTTTCAGCCAAAAAGAGGAAAAATATCCAA AAATTTCGCTGATTTCCGCTGATTTCGCTTGCGTAAGCTTTCCAAATATC TTTTTCTTAACTCTTTAAAATTACTTCCTTACTTTGCCCAAATATTGGTT GATCAACCACGCTACTGTTTAGCAGCCCCAAAAAGATGCTCTTTCTAGGC ACCAAATCTTAGAGATCTCAATCAATCAATATTAGGCTATGCTCATCCTC TAAGGAAAAGGTTTCTTATATGATCCCTATATGATGCAGAATAGACGTCT GCGAAAAAGAATAATACAATCAAAATAAGTCTGTTAATGTTTTTTCAACA TTCTCGACTGGACCCAACTTTTCTTTACCTTTGAATTGTAGAGTCAATTT AGTGAATGCTTTGGGCAGAAAACCGTTGACTCGTTAATCGTTAATCAGGG ACTGCGCCTTGTGAAGAAAACAAGAATTTTTTAAATTAAAGACCAAGGGC ATCATTTTGGGGCAAATTGAGTCTGAAACAGGGCTATTTTGAGCACATTA GGGAGTCAAAATCCAAAATTTCCTCCTCCTTAGTTTGGCCACTTTACTAT CAAAATCAAGGGAAGGGCCCTGTTGATCTGATTCATTAGATGATAGATCT TTTTAAGCCACGGTCTTAAGGAATTTTTAAAACTGAAAAGTTTCATGTCA GCGCAAACTCTGTTTGCGCCTTTCCTTACCAATACTAGATATTTGACAAC TATTTGCCATCATACGCATCATATATCATAACTTAATTATTAGCAGCTCA AGACTTCATAGCCATGTATACAATGATGCTAGTATTTGAAGGGAAACTGA ACGGCTGAACGGCCCGCTGAACACCACGGATGCCAAACTTATGGTTTTCA ACTCAAAAAATTATTTTAGGCAAAGTGGCTTTGGATGGGGTCCATATCAA CTCCAATATCAATGATTAAAAAAGGCTTCTGGAGCAAGAAGGAAAAATCG GTGTCGGTGAAAAGGATAAATTCTGTCGGTTTATCGGTGAGAGTAGAGCA ATTTTTGAGCGGTTTATCGGTTTTCGAAAGTCCTGTACGCCCCCCTTACA AGAAGAGGGTCCTGAGGGGGGGGGGTTTCCGGACCCCCAGGAAACTATGT TTTCCTAAGAAATCTCACCACAGCAAATGTGCTGCCAAAATTTTGTATAT AATCCAAGATGGCGGACAAAAAGCGAAAAGGTCCATGTAATATGATATTT TTATATATCTTTTTCTAAATTCCCTTTACAGGCATGTACAAAGACAGAAG GTGGATCAAACTGTTTGACTCTTTATTTTGTGTTCTCAATGAAAAAGGTC AGGTAATGGGTTTCAGACTGGTTAAAGGAACTAAATTTGACCTTGTTTAT GACATTTTCAAACAACTGGCTGAGAAAGGAACCACGCCACACTTTATTAT CATTGACAACTGTTGTTTATGGGTAAACAAATTGAATGAATTATTCCCTG GTGTTGCTGTTAAACTAGATCTGTTTCATGCCATAGCGAGATTAACCGGA CAGGTTTAAAAAAAACACCCATTGTTTTTTGACTTTGTAAAAGAACTGGG ACTAATATTCCGAGAAATTTCAGATTTTGGAGAGGTAAGGAAATTGCCTA CTCCAAAGCCAAATGTGATTTTAGAAAATCTTGAAAGGTTCATCTTGAAA TGGTCAGATGTCAGTTTCAAAGGTTGGTTTATTCTGACTCCATCCTTTAG TATGGAAATTGAAAAGCTTAAGAAACATATTAACTTAGGGTGTTGCTCTG ATATTCCACCTGGTGGTGGCACAAACAAAAATGAAAATCTACATAAACAG CTGAAAAGCTTAGTTTGTAGAGGAAAAATGAAAACTGAGACGGCAACTGC AATTTTCTCTCATTTGTTTTACATCCACAATTCTAAGAAGAATGGGGAAA AGTATGTACACCCTATATTCTCTAAGGGTGAACCAAGAACGTTGCCGGGA AGTGCATCCACGTTGGTCATCAATAAAGATAACAAAGGAAATAATGTAGC CGTTCTTGCTGAAGACATATTGGAGGTGGATTCAGATCGAAAAGATAATG CACAAGAACAAATTAGTAAGTATTGTAAGAATGAATTAATTGTCTGTGTG TCTGTCTGTCTGTCTGTTTGTCTGTCTGTGTGCATGTCCCAAAACTTTGG GGCAGCCTGGAGACCTCAAAAATGGTCGGATTTGGCTGAAATTTTGCACA CTTGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTCAAAATT TTGATTATTAGAGCCTGGGATAAGTTTTTCACAGCTGCTACAATTGGGCC TCTGAATAGTTGGAAAAATACTGAAGTTGAGCCCAGTGCGTTGCGCACGT TCGACTATTTGAAGGGGGCATTCAAAAAAGTATGTTTGTCAGTTTTAGAC CCCCTGCCCTCTTTATTTGCAGACTTTGATTTCAAACTACCCCTACATTT GTTTTTTATCTCAAATTTATCCCCCCCCCCTTTGCCCAAAAAGGTTTTTA CACTTTTTAATATTAAAATGTTTTCCAGTCTTCAAGTGGATAAAGCTACT TTGAATAAAGTGAATTGCAAAAACTGGGTAAAACGTCTATTTTCATCTGC ATCACTTTCGATGTTCTATTGCTAAAAATAATTCAAACTTTGATTTTATA GGTTGTGTTTCAAAGATGGTAGTGGTGTTAGGATCTGTTTTGGAAAAAAT CAATGCTATGATCCCAAAAGATCTTTCAAGTCGACTTTACCGATATCAAG GTTTCACTACACTCATCACTGAAATATGGAACCCACTTACATTTTTTCAG GCTGCGAGAAAAATGGAGTCTTTTCCAGCAATTGCTGAAGTTTTAAAGCT AATGAATCTGCACATTATTGAAACAGCAGCTGACGATTGCAATGATAGTT TTCTTTTTACCATCTTCAAAGCATTGAAAGGTCACAACCTTAAATGTGAA ATGGATATTGAATTGAAACCTACATTTGAAGAAAGCCGGGAAGAAATTAT CCACGCTCTTTTGCATGAGGCCAACGGTGTCCGCTGTTTCTTGTATGACA GTCTAATTGAAAGTGATGAAGGTAATTGTACAACATTTCTATCAGAAAAT AAACTGCAGTTTCTTCAATGTGTGCTTCCTCTGATTGCTGCAAATGCCTT TTCTCTCCCTATTTTGGTGTTACCTTCGTGTCATGGAATGCCCATGTTTC CCATCTTACCTGAGGAAATAAGTAATAAGTTGATATTTGTTTTTTATGAC ATAACCATGTCTTCATATCATTTGCTAACCAAACATGACCCTGGAAAATC CAGAGCCTTTTGTCGTTGTGGCACAAGAATCAAAAAGAAAGATGGCAAGT CAGAACCACGCTGTATCAATACATTTATGTGTTCTTGCAAAAAAGAAAAT GTGCCGTGCTCAAGTAAATGTACTTGTCGGAACTGCGACAATGCAAAGAC ACCACTTCAAGAGGAAACGAAACAGAAAAGAAGAAAAAGGTCACAATACT TTCTTTCAAAATCATCAGTAAATGAAATTGATCATCAATCATCAACATCA CATATTAATGGAATGCATCACTACATTCTGGAAGCCTGTTTACATTTAAT GTTGAAGGAAATGCACTGTGAC

Coding sequence (CDS) from alignment at scaffold_51:126268..131689-

>TCONS_00069840 ID=TCONS_00069840|Name=TCONS_00069840|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at scaffold_51:126268..131689- (Clytia hemisphaerica)
ATGGTAGTGGTGTTAGGATCTGTTTTGGAAAAAATCAATGCTATGATCCC
AAAAGATCTTTCAAGTCGACTTTACCGATATCAAGGTTTCACTACACTCA
TCACTGAAATATGGAACCCACTTACATTTTTTCAGGCTGCGAGAAAAATG
GAGTCTTTTCCAGCAATTGCTGAAGTTTTAAAGCTAATGAATCTGCACAT
TATTGAAACAGCAGCTGACGATTGCAATGATAGTTTTCTTTTTACCATCT
TCAAAGCATTGAAAGGTCACAACCTTAAATGTGAAATGGATATTGAATTG
AAACCTACATTTGAAGAAAGCCGGGAAGAAATTATCCACGCTCTTTTGCA
TGAGGCCAACGGTGTCCGCTGTTTCTTGTATGACAGTCTAATTGAAAGTG
ATGAAGGTAATTGTACAACATTTCTATCAGAAAATAAACTGCAGTTTCTT
CAATGTGTGCTTCCTCTGATTGCTGCAAATGCCTTTTCTCTCCCTATTTT
GGTGTTACCTTCGTGTCATGGAATGCCCATGTTTCCCATCTTACCTGAGG
AAATAAGTAATAAGTTGATATTTGTTTTTTATGACATAACCATGTCTTCA
TATCATTTGCTAACCAAACATGACCCTGGAAAATCCAGAGCCTTTTGTCG
TTGTGGCACAAGAATCAAAAAGAAAGATGGCAAGTCAGAACCACGCTGTA
TCAATACATTTATGTGTTCTTGCAAAAAAGAAAATGTGCCGTGCTCAAGT
AAATGTACTTGTCGGAACTGCGACAATGCAAAGACACCACTTCAAGAGGA
AACGAAACAGAAAAGAAGAAAAAGGTCACAATACTTTCTTTCAAAATCAT
CAGTAAATGAAATTGATCATCAATCATCAACATCACATATTAATGGAATG
CATCACTACATTCTGGAAGCCTGTTTACATTTAATGTTGAAGGAAATGCA
CTGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043491XLOC_043491Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069840-proteinTCONS_00069840-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069840-exon-scaffold_51-1575043694:130857..131689TCONS_00069840-exon-scaffold_51-1575043694:130857..131689Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1575043694:128306..128658TCONS_00069840-exon-scaffold_51-1575043694:128306..128658Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1575043694:127825..127963TCONS_00069840-exon-scaffold_51-1575043694:127825..127963Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1575043694:126268..127238TCONS_00069840-exon-scaffold_51-1575043694:126268..127238Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1510915933:130857..131689TCONS_00069840-exon-scaffold_51-1510915933:130857..131689Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1510915933:128306..128658TCONS_00069840-exon-scaffold_51-1510915933:128306..128658Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1510915933:127825..127963TCONS_00069840-exon-scaffold_51-1510915933:127825..127963Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1510915933:126268..127238TCONS_00069840-exon-scaffold_51-1510915933:126268..127238Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1491911889:130857..131689TCONS_00069840-exon-scaffold_51-1491911889:130857..131689Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1491911889:128306..128658TCONS_00069840-exon-scaffold_51-1491911889:128306..128658Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1491911889:127825..127963TCONS_00069840-exon-scaffold_51-1491911889:127825..127963Clytia hemisphaericaexon
TCONS_00069840-exon-scaffold_51-1491911889:126268..127238TCONS_00069840-exon-scaffold_51-1491911889:126268..127238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_51supercontigscaffold_51:126268..131689 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.036194 0 0.296205 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.315012 0.506364 0 0 0 0.0319369 0 7.44775e-05 0.073244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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