TCONS_00069831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069831
Unique NameTCONS_00069831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069831 ID=TCONS_00069831|Name=TCONS_00069831|organism=Clytia hemisphaerica|type=transcript|length=733bp
ATTTCGTAAAAAAATGCACCGCTCGAAAGCAAAAGAAACCGCCAGATACA
AAGCGTTATAGTTCCGATCCCCTTTAAACTCAATAGCGTATTTACCCATT
CTTAAGCTTAAATCAACCATAATAGAATTGTATAAATTATAAAATCCATG
ATCTGTCGTTCTTTTAATCAGTAACCACAGTCTCCGACATTCCACTCCTC
AGAGTCCATCTACATTCCTTTATACATCCTTGCCTTCCTTGATGACAAAC
CATCATTGCTTCTTCCGAATTCTCAACCTGTGAGATGCATTCTGAAAACG
AGCTACCACATCTCATACGACAGGCTACTTTTAATAGCTTAGCTCCCGTT
AGTGTTTCTTCACCATTCTCATCGCGTACGGTACTCCCAATACCCAGCTG
ACGTGCTGAATCTACTTTTTGATTTAAGATCTGTGCTTTAGTTGCTTTGG
ATGTGTCTTTAAAAACCATCGGCGTATGTATTTGAGTCttacttttttcc
aaaagttgTTTCTCCGCGATCAAAGATTTTCTAGCAGCTTCCAATTTCTG
ATGTAAAACACGACTTGTATCGGACATAGGTCTACTATAGACCATACTGA
GCGCTGATACTACAAACATCATTGTTACAAACATTTCTGACGAAAACATC
TTCTTGTTCTTCAGTTTTCTGTTTTATGAATCAGAGATTTGTTAATATTT
AATCTTCTGAAGACAACATACTGATAAGAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00069831-protein

>TCONS_00069831-protein ID=TCONS_00069831-protein|Name=TCONS_00069831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MFSSEMFVTMMFVVSALSMVYSRPMSDTSRVLHQKLEAARKSLIAEKQLL
EKSKTQIHTPMVFKDTSKATKAQILNQKVDSARQLGIGSTVRDENGEETL
TGAKLLKVACRMRCGSSFSECISQVENSEEAMMVCHQGRQGCIKECRWTL
RSGMSETVVTD
Run BLAST on NCBI

transcript from alignment at scaffold_509:63568..64300

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069831 ID=TCONS_00069831|Name=TCONS_00069831|organism=Clytia hemisphaerica|type=transcript|length=733bp|location=Sequence derived from alignment at scaffold_509:63568..64300 (Clytia hemisphaerica)
CTCTTCTTATCAGTATGTTGTCTTCAGAAGATTAAATATTAACAAATCTC
TGATTCATAAAACAGAAAACTGAAGAACAAGAAGATGTTTTCGTCAGAAA
TGTTTGTAACAATGATGTTTGTAGTATCAGCGCTCAGTATGGTCTATAGT
AGACCTATGTCCGATACAAGTCGTGTTTTACATCAGAAATTGGAAGCTGC
TAGAAAATCTTTGATCGCGGAGAAAcaacttttggaaaaaagtaaGACTC
AAATACATACGCCGATGGTTTTTAAAGACACATCCAAAGCAACTAAAGCA
CAGATCTTAAATCAAAAAGTAGATTCAGCACGTCAGCTGGGTATTGGGAG
TACCGTACGCGATGAGAATGGTGAAGAAACACTAACGGGAGCTAAGCTAT
TAAAAGTAGCCTGTCGTATGAGATGTGGTAGCTCGTTTTCAGAATGCATC
TCACAGGTTGAGAATTCGGAAGAAGCAATGATGGTTTGTCATCAAGGAAG
GCAAGGATGTATAAAGGAATGTAGATGGACTCTGAGGAGTGGAATGTCGG
AGACTGTGGTTACTGATTAAAAGAACGACAGATCATGGATTTTATAATTT
ATACAATTCTATTATGGTTGATTTAAGCTTAAGAATGGGTAAATACGCTA
TTGAGTTTAAAGGGGATCGGAACTATAACGCTTTGTATCTGGCGGTTTCT
TTTGCTTTCGAGCGGTGCATTTTTTTACGAAAT

Coding sequence (CDS) from alignment at scaffold_509:63568..64300

>TCONS_00069831 ID=TCONS_00069831|Name=TCONS_00069831|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_509:63568..64300 (Clytia hemisphaerica)
ATGTTTTCGTCAGAAATGTTTGTAACAATGATGTTTGTAGTATCAGCGCT
CAGTATGGTCTATAGTAGACCTATGTCCGATACAAGTCGTGTTTTACATC
AGAAATTGGAAGCTGCTAGAAAATCTTTGATCGCGGAGAAAcaacttttg
gaaaaaagtaaGACTCAAATACATACGCCGATGGTTTTTAAAGACACATC
CAAAGCAACTAAAGCACAGATCTTAAATCAAAAAGTAGATTCAGCACGTC
AGCTGGGTATTGGGAGTACCGTACGCGATGAGAATGGTGAAGAAACACTA
ACGGGAGCTAAGCTATTAAAAGTAGCCTGTCGTATGAGATGTGGTAGCTC
GTTTTCAGAATGCATCTCACAGGTTGAGAATTCGGAAGAAGCAATGATGG
TTTGTCATCAAGGAAGGCAAGGATGTATAAAGGAATGTAGATGGACTCTG
AGGAGTGGAATGTCGGAGACTGTGGTTACTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043485XLOC_043485Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069831-proteinTCONS_00069831-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069831-exon-scaffold_509-1491911889:63568..64300TCONS_00069831-exon-scaffold_509-1491911889:63568..64300Clytia hemisphaericaexon
TCONS_00069831-exon-scaffold_509-1510915933:63568..64300TCONS_00069831-exon-scaffold_509-1510915933:63568..64300Clytia hemisphaericaexon
TCONS_00069831-exon-scaffold_509-1575043694:63568..64300TCONS_00069831-exon-scaffold_509-1575043694:63568..64300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_509supercontigscaffold_509:63568..64300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0749996	0.0913048	0.0721503	0	0	0	0	0	0	1.08069	0.748207	0	0.0412579	0.660743	0.364668	2.8789	3.08788	0.327308	0.191579	0	0	0	0	0.649865	0.396316	0	0.0765639
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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