Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069822 ID=TCONS_00069822|Name=TCONS_00069822|organism=Clytia hemisphaerica|type=transcript|length=1599bpRun BLAST on NCBI protein sequence of TCONS_00069822-protein >TCONS_00069822-protein ID=TCONS_00069822-protein|Name=TCONS_00069822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp LVQLNNNKYRIICQKLITHIKIIYTLNTQLPKINYINHQPTIIHRIFISCRun BLAST on NCBI transcript from alignment at scaffold_509:73559..83590- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069822 ID=TCONS_00069822|Name=TCONS_00069822|organism=Clytia hemisphaerica|type=transcript|length=10032bp|location=Sequence derived from alignment at scaffold_509:73559..83590- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_509:73559..83590- >TCONS_00069822 ID=TCONS_00069822|Name=TCONS_00069822|organism=Clytia hemisphaerica|type=CDS|length=15876bp|location=Sequence derived from alignment at scaffold_509:73559..83590- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069822 vs. Swiss-Prot (Human)
Match: HPPD (4-hydroxyphenylpyruvate dioxygenase OS=Homo sapiens GN=HPD PE=1 SV=2) HSP 1 Score: 541.962 bits (1395), Expect = 0.000e+0 Identity = 253/384 (65.89%), Postives = 307/384 (79.95%), Query Frame = 3 Query: 171 MTSYTEKGEKPEVGKFVAFDHIRFYVGNAKQAASFYCTRFGFEPYCYRGLETGSRDVASHVIKQNDIIFVFESPYNPEGPVTEELGKHQMKHGDGVKDIAFQVEDCVKLYHKSIERGGSSVREPWEEKDENGTVIFAQVKTYGDTIHTFVERKDYKGLFLPGFELVTKKDPLLEKLPTIGLQFVDHVVGNQPDLEMTPVAESYEKNLMFHRFWSVDDSQIHTEYSALRSIVVTNYEETIKMPINEPAPGKKKSQIQEYVDYYGGAGVQHIALNTNDIISAITNMKERGMEFLNIPDTYYEALRERLKHSKVKVTEPLDVLQKLKILIDYDENGYLLQIFSKPCQDRPTLFLETIQRHNHSGFGAGNFKALFESIEADQSDRGNL 1322 MT+Y++KG KPE G+F+ F + F+VGNAKQAASFYC++ GFEP YRGLETGSR+V SHVIKQ I+FV S NP +E+G H +KHGDGVKDIAF+VEDC + K+ ERG +REPW E+D+ G V FA ++TYGDT HT VE+ +Y G FLPG+E DPLL KLP L+ +DH+VGNQPD EM +E Y KNL FHRFWSVDD+Q+HTEYS+LRSIVV NYEE+IKMPINEPAPGKKKSQIQEYVDY GGAGVQHIAL T DII+AI +++ERG+EFL++P TYY+ LRE+LK +K+KV E +D L++LKIL+DYDE GYLLQIF+KP QDRPTLFLE IQRHNH GFGAGNF +LF++ E +Q+ RGNL Sbjct: 1 MTTYSDKGAKPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVFVLSSALNP---WNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFGKVKFAVLQTYGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEMIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSIVVANYEESIKMPINEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLKTAKIKVKENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQGFGAGNFNSLFKAFEEEQNLRGNL 381 The following BLAST results are available for this feature:
BLAST of TCONS_00069822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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