TCONS_00069816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069816
Unique NameTCONS_00069816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1949

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069816 ID=TCONS_00069816|Name=TCONS_00069816|organism=Clytia hemisphaerica|type=transcript|length=1949bp
gaaaaaagaatggATCAAAATATGGATACCATAACAGAAGAATTATGCTC
ACATTCAGATCTTAACAAAGTGGCTACAATTGAATTTTATCAATGTGAAC
CTTGCAATGAGATTCTGTACTCTTTCAACAAAACGACTTTGAACTTATCG
TTCCGTATGGATCAATGGAACACTTTTGTCCGACAATTAATGGACAACTT
TAACGTGATGGAGTCAACTGGTTCAGACAGTCTCCAGTGTGGAGAATGTA
CTATCCTTTTCTCATCTAAAGAAGAATTGATGAAACATAAAATCGCAAAT
CCCCTGAACTGTCGGAAatgttttcaagttttttcGTGCCCCATCAAATA
CAAGGAACACGAAGAATACCACTCCAAACAAAAACCATACGAGTGTGATA
AATGTGGTAAGCGATACGCAGAGAAAACGtattatcaaaaacatttaaaa
atgcATGAAAATGAACCAGTCAATCAGAACCGTGTACCGTTCAAATCTAT
CGAATCactaaaattgagaaaacgtAGATTTAACGTAAAGCGGAATTTCA
AATGCCCACTATGTCCCAAATCATTTGCGTGCAACAACAATCTCCAAACA
CACATCCGTGTCCACACAGGTGAGAAACCATTCCAATGCGGTGATTGTGG
GAAAGCGTTCAGCGACCCCAGTGCACTTAAAAGACACGTCATAGCAATAC
ACACAAATATCAAAGATCATAAGTGTGATATCTGCGGTAAAGCATTCGCT
ATTCTCGACAATTTGAGGCGACATTACGTTATCCATACTGGAGAACGACC
TTACCTATGTAAAATTTGCGGAGAACGTTTTAAGAATCCATCACAGCTGA
AAACCCATTCTCGCATTCATACCGGTGACTCATTCAAATGCGAGACGTGC
GGAATGGGCTTTTTCAAAAAGACAGATCtcaataaacataaaaagattcA
TCTTCCCGGATATACTCCTACCAAGAATAATAGCCTCGCCAAAGCTGCTT
GCACCACCTCAAAAGAGTCACCATTTCCATCCATAGAATGTTCGTACTGT
GACAAAAGATTCACCTATCCTTCAGAGCTAAAGAAACACATTGTAAAACA
CACTAAAGAAAGAAACTTTGAATGCGATGTGTGTGATAAGAAGTTTACAC
GATCCAATCATCTTTTTACACATAAGAAGATGCATGCTGGTGCGGGAAAA
CCACACAAATGTGATATCTGTGGGAAAGGGTATTGGAATAAGGCTGATAG
AGATAAACATCGGAATTCCAGCGTCCATAAGGTTAACACTGGTTCTGATA
AACAACCTTTTCACTGTGATGTTTGTGGTGAATCATTTACCGATATTACC
AAATTGCGTGTTCATTCAAAGACACATGTAGGAAATAAGCAAAACAAGTG
CGCTGTTTGTGATAAAACGTTTTCAGAGGCAAGTGAGTTGGTGGAGCATT
ATCAGCTTCACAAGAAACCAGAGAAATGTGTCATTTGTGAGAAAACGTTC
ACAAATCAAGCTGAATTAAGGAAACATTTTCAACTCCATAAGAAGGTCAA
AGAAAGCACCAAAAAGAAGGATGATATAAGTATTGGTGGCAATGAAAATA
GTGATAAGCAAATAACTGCAGAtaaaaatggtgaaaacaagGAACAGTTA
GATAATATAAAAGATCAGCCTCTATAAGTCATAACGACGATGAACAAGTT
TCTTCTGGTGATAGTGAAGAAACCAACAGAAATGAGATAGTGTCTGGGAA
TTGTggtgaaaatgaaatttatgTGATTGATAAAACAACTGACGAAAACA
AAACCTCTGTTAATGATAGTGGAAATAAATCTGCTATGGTTTCTGGAAAG
TTCAATGAAAACTCTAGCAATTGTGGTAATGTCAGTGTTGAGAACAATGG
ttgatgattttgaatttttgttgactgattttttttttttcacttttaa
Run BLAST on NCBI

transcript from alignment at scaffold_509:19832..21780+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069816 ID=TCONS_00069816|Name=TCONS_00069816|organism=Clytia hemisphaerica|type=transcript|length=1949bp|location=Sequence derived from alignment at scaffold_509:19832..21780+ (Clytia hemisphaerica)
gaaaaaagaatggATCAAAATATGGATACCATAACAGAAGAATTATGCTC ACATTCAGATCTTAACAAAGTGGCTACAATTGAATTTTATCAATGTGAAC CTTGCAATGAGATTCTGTACTCTTTCAACAAAACGACTTTGAACTTATCG TTCCGTATGGATCAATGGAACACTTTTGTCCGACAATTAATGGACAACTT TAACGTGATGGAGTCAACTGGTTCAGACAGTCTCCAGTGTGGAGAATGTA CTATCCTTTTCTCATCTAAAGAAGAATTGATGAAACATAAAATCGCAAAT CCCCTGAACTGTCGGAAatgttttcaagttttttcGTGCCCCATCAAATA CAAGGAACACGAAGAATACCACTCCAAACAAAAACCATACGAGTGTGATA AATGTGGTAAGCGATACGCAGAGAAAACGtattatcaaaaacatttaaaa atgcATGAAAATGAACCAGTCAATCAGAACCGTGTACCGTTCAAATCTAT CGAATCactaaaattgagaaaacgtAGATTTAACGTAAAGCGGAATTTCA AATGCCCACTATGTCCCAAATCATTTGCGTGCAACAACAATCTCCAAACA CACATCCGTGTCCACACAGGTGAGAAACCATTCCAATGCGGTGATTGTGG GAAAGCGTTCAGCGACCCCAGTGCACTTAAAAGACACGTCATAGCAATAC ACACAAATATCAAAGATCATAAGTGTGATATCTGCGGTAAAGCATTCGCT ATTCTCGACAATTTGAGGCGACATTACGTTATCCATACTGGAGAACGACC TTACCTATGTAAAATTTGCGGAGAACGTTTTAAGAATCCATCACAGCTGA AAACCCATTCTCGCATTCATACCGGTGACTCATTCAAATGCGAGACGTGC GGAATGGGCTTTTTCAAAAAGACAGATCtcaataaacataaaaagattcA TCTTCCCGGATATACTCCTACCAAGAATAATAGCCTCGCCAAAGCTGCTT GCACCACCTCAAAAGAGTCACCATTTCCATCCATAGAATGTTCGTACTGT GACAAAAGATTCACCTATCCTTCAGAGCTAAAGAAACACATTGTAAAACA CACTAAAGAAAGAAACTTTGAATGCGATGTGTGTGATAAGAAGTTTACAC GATCCAATCATCTTTTTACACATAAGAAGATGCATGCTGGTGCGGGAAAA CCACACAAATGTGATATCTGTGGGAAAGGGTATTGGAATAAGGCTGATAG AGATAAACATCGGAATTCCAGCGTCCATAAGGTTAACACTGGTTCTGATA AACAACCTTTTCACTGTGATGTTTGTGGTGAATCATTTACCGATATTACC AAATTGCGTGTTCATTCAAAGACACATGTAGGAAATAAGCAAAACAAGTG CGCTGTTTGTGATAAAACGTTTTCAGAGGCAAGTGAGTTGGTGGAGCATT ATCAGCTTCACAAGAAACCAGAGAAATGTGTCATTTGTGAGAAAACGTTC ACAAATCAAGCTGAATTAAGGAAACATTTTCAACTCCATAAGAAGGTCAA AGAAAGCACCAAAAAGAAGGATGATATAAGTATTGGTGGCAATGAAAATA GTGATAAGCAAATAACTGCAGAtaaaaatggtgaaaacaagGAACAGTTA GATAATATAAAAGATCAGCCTCTATAAGTCATAACGACGATGAACAAGTT TCTTCTGGTGATAGTGAAGAAACCAACAGAAATGAGATAGTGTCTGGGAA TTGTggtgaaaatgaaatttatgTGATTGATAAAACAACTGACGAAAACA AAACCTCTGTTAATGATAGTGGAAATAAATCTGCTATGGTTTCTGGAAAG TTCAATGAAAACTCTAGCAATTGTGGTAATGTCAGTGTTGAGAACAATGG ttgatgattttgaatttttgttgactgattttttttttttcacttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043472XLOC_043472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069816-exon-scaffold_509-1491911889:19832..21780TCONS_00069816-exon-scaffold_509-1491911889:19832..21780Clytia hemisphaericaexon
TCONS_00069816-exon-scaffold_509-1510915933:19832..21780TCONS_00069816-exon-scaffold_509-1510915933:19832..21780Clytia hemisphaericaexon
TCONS_00069816-exon-scaffold_509-1575043694:19832..21780TCONS_00069816-exon-scaffold_509-1575043694:19832..21780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_509supercontigscaffold_509:19832..21780 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.81669 4.96252 3.61314 2.94962 7.75224 5.99198 5.68312 4.04647 2.73483 2.83591 4.35026 2.53477 1.87506 2.12642 2.41954 2.89415 4.82175 3.97988 1.19119 1.29965 2.63618 2.44154 6.28946 5.88609 6.7606 9.20763 1.60894 1.53902 4.02828 4.33475
Blast
BLAST of TCONS_00069816 vs. Swiss-Prot (Human)
Match: ZN226 (Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.894e-77
Identity = 157/451 (34.81%), Postives = 238/451 (52.77%), Query Frame = 1
Query:  235 QCGECTILFSSKEEL----MKHKIANPLNCRKCFQVFSCPIKYKEHEEYHSKQKPYECDKCGKRYAEKTYYQKHLKMHENEPVNQNRVPFKSIESXXXXXXXXXXXXXXXCPLCPKSFACNNNLQTHIRVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGDS-FKCETCGMGFFKKTDLNKHKKIHLP---------GYTPTKNNSLAKAACTTSKESPFPSIECSYCDKRFTYPSELKKHIVKHTKERNFECDVCDKKFTRSNHLFTHKKMHAGAGKPHKCDICGKGYWNKADRDKHRNSSVHKVNTGSDKQPFHCDVCGESFTDITKLRVHSKTHVGNKQNKCAVCDKTFSEASELVEHYQLH--KKPEKCVICEKTFTNQAELRKHFQLH 1539
            +C +C   FS +  L      H    P NC +C + FS     ++H+  H+ +KP++CD CGK ++  ++ Q H ++H  E       P+K                   C  C K F C++NL  H RVHTGEKP++C +CGK FS PS+L+ H   +HT  K + C +CGK F +  NL+ H  +HTGE+PY C  CG+ F+  S  + H  +HTG+  +KCE CG GF + + L  H+K H           G    +++ L       + E P+   +C  C K F+  ++LK H   HT E+ + C+ C K F ++++L  H+++H+G  KP KC+ CGK +   A    H+     KV+TG   +P+ CD CG+ F     L +H + H G K  KC  C K FS+AS L  H  +H  +KP KC +C K F+  ++L+ H ++H
Sbjct:  336 KCKQCGKGFSRRSALNVHCKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEK------PYK-------------------CEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQ-GVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPY---KCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGE-KPFKCEECGKSFGRSAHLQAHQ-----KVHTGD--KPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVH 749          

HSP 2 Score: 238.81 bits (608), Expect = 8.483e-68
Identity = 152/449 (33.85%), Postives = 238/449 (53.01%), Query Frame = 1
Query:  217 TGSDSLQCGECTILFSSKEELMKHK---IANPLNCRKCFQVFSCPIKYKEHEEYHSKQKPYECDKCGKRYAEKTYYQKHLKMHENE-PVNQNRVPFKSIESXXXXXXXXXXXXXXXCPLCPKSFACNNNLQTHIRVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGD-SFKCETCGMGFFKKTDLNKHKKIHLPGYTPTKNNSLAKAACTTSKESPFPSIECSYCDKRFTYPSELKKHIVKHTKERNFECDVCDKKFTRSNHLFTHKKMHAGAGKPHKCDICGKGYWNKADRDKHRNSSVHK-VNTGSDKQPFHCDVCGESFTDITKLRVHSKTHVGNKQNKCAVCDKTFSEASELVEHYQLH--KKPEKCVICEKTFTNQAELRKHFQLH 1539
            +G  SL C E    F     L  H+   +   L C +C + FS     + H++ H  +KPY+C +CGK ++ ++    H K+H  E P N                          C  C ++F+  ++LQ H R+HTGEKPF+C  CGK+FS  S L+ H   +HT  K +KC+ CGK F    NL  H  +HTGE+PY C+ CG+ F  PS L+ H  +HTG+ S+ C  CG GF   ++L  H+++H                   + E P+   +C+ C K F   S  + H+V HT E+ ++C++C K F++S++L  H+K H+   KP KC+ CG+G+ N++ R +     +H+ ++TG  ++P+ C+ CG+ F+    L++H + H G K   C  C K F +AS L+ H ++H  +KP KC  C K+F   A L+ H ++H
Sbjct:  275 SGEKSLTCVERGKGFCYSPVLPVHQKVHVGEKLKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPYN--------------------------CEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQ-RVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVH-------------------TGEKPY---KCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHS-IEKPFKCEECGQGF-NQSSRLQ-----IHQLIHTG--EKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVH 665          

HSP 3 Score: 215.312 bits (547), Expect = 1.333e-59
Identity = 136/402 (33.83%), Postives = 209/402 (51.99%), Query Frame = 1
Query:  370 HSKQKPYECDKCGKRYAEKTYYQKHLKMHENEPVNQ--NRVPFKSIESXXXXXXXXXXXXXXXCPLCPKSFACNNNLQTHIRVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGDS-FKCETCGMGFFKKTDLNKHKKIHLPGYTPTKNNSLAKAACTTSKESPFPSIE-------CSYCDKRFTYPSELKKHIVKHTKERNFECDVCDKKFTRSNHLFTHKKMHAGAGKPHKCDICGKGYWNKADRDKHRNSSVHKVNTGSDKQPFHCDVCGESFTDITKLRVHSKTHVGNKQNKCAVCDKTFSEASELVEHYQLH--KKPEKCVICEKTFTNQAELRKHFQLH 1539
            H+ QK Y+C++C K +++ + +  H ++   E       R        +    ++ +V    KC  C K F+   +LQTH +VH  EKP++C  CGK FS  SAL  H   +HT  K + C+ CG+AF+   +L+ H  +HTGE+P+ C  CG+ F   S L++H R+HTG+  +KCE CG GF   ++L  H+++H  G  P K     K     S       +        C+ C K FT  S L+ H   HT E+ ++C+ C K F R++H   H  +H G  KP+KC+ICGKG+   +    H+ +        S ++PF C+ CG+ F   ++L++H   H G K  KC  C K FS  ++L  H ++H  +KP  C  C K F   + L  H ++H
Sbjct:  246 HTGQKSYQCNECKKPFSDLSSFDLHQQLQSGEKSLTCVERGKGFCYSPVLPVHQKVHVGEKLKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHC-KVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHT-GEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGE-KPYKCEICGKGFSQSSYLQIHQKAH-------SIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVH 637          

HSP 4 Score: 156.377 bits (394), Expect = 6.734e-40
Identity = 101/322 (31.37%), Postives = 163/322 (50.62%), Query Frame = 1
Query:  607 RVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGDSFKCETCGMGFFKKTDLNKHKKIHLP---------GYTPTKNNSLAKAACTTSKESPFPSIECSYCDKRFTYPSELKKHIVKHTKERNFECDVCDKKFTRSNHLFTHKKMHAGAGKPHKCDICGKGYWNKADRDKHRNSSVHKVNTGSDKQPFHCDVCGESFTDITKLRVHSKTHVGNKQNKCAVCDKTFSEASELVEHYQLH--KKPEKCVICEKTFTNQAELRKHFQLH 1539
            RVH  EK ++  D  K          H   IHT  K ++C+ C K F+ L +   H  + +GE+   C   G+ F     L  H ++H G+  KC+ CG  F +   L  H+K+H+          G   ++ ++L       + E P+    C  C + F+  S L+ H   HT E+ F+CD C K F+R++HL +H+++H G  KP+KC+ CGKG+   ++   H+     +V+TG  ++P+ C+ CG+ F+  + L+ H   H G K   C VC K F+ +S L  H ++H  +KP KC  C K+F   +  + H  +H
Sbjct:  216 RVHKSEKSYRPNDYEKDNMKILTFD-HNSMIHTGQKSYQCNECKKPFSDLSSFDLHQQLQSGEKSLTCVERGKGFCYSPVLPVHQKVHVGEKLKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPY---NCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGE-KPYKCEECGKGFICSSNLYIHQ-----RVHTG--EKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVH 525          

HSP 5 Score: 154.451 bits (389), Expect = 3.504e-39
Identity = 91/245 (37.14%), Postives = 125/245 (51.02%), Query Frame = 1
Query:  217 TGSDSLQCGECTILFSSKEEL----MKHKIANPLNCRKCFQVFSCPIKYKEHEEYHSKQKPYECDKCGKRYAEKTYYQKHLKMHENEPVNQNRVPFKSIESXXXXXXXXXXXXXXXCPLCPKSFACNNNLQTHIRVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGD-SFKCETCGMGFFKKTDLNK 936
            TG    +C EC   FS + +L      H    P NC +C +VF        H+  HS +KP++C++CGK +    + Q H K+H  +       P+K                   C  C K F  + NL  H RVHTGEKP++CG+CGK FS  S+L+ H  ++HT  K +KCD+CGK F+    L+ H  +HTGE+PY C+ICG+ F   S L  H RIH GD S+K    G    + T   K
Sbjct:  582 TGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDK------PYK-------------------CDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQ-SVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNIRESTQEKK 800          
The following BLAST results are available for this feature:
BLAST of TCONS_00069816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2262.894e-7734.81Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 ... [more]
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