Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069816 ID=TCONS_00069816|Name=TCONS_00069816|organism=Clytia hemisphaerica|type=transcript|length=1949bpRun BLAST on NCBI transcript from alignment at scaffold_509:19832..21780+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069816 ID=TCONS_00069816|Name=TCONS_00069816|organism=Clytia hemisphaerica|type=transcript|length=1949bp|location=Sequence derived from alignment at scaffold_509:19832..21780+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00069816 vs. Swiss-Prot (Human)
Match: ZN226 (Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=2 SV=2) HSP 1 Score: 265.388 bits (677), Expect = 2.894e-77 Identity = 157/451 (34.81%), Postives = 238/451 (52.77%), Query Frame = 1 Query: 235 QCGECTILFSSKEEL----MKHKIANPLNCRKCFQVFSCPIKYKEHEEYHSKQKPYECDKCGKRYAEKTYYQKHLKMHENEPVNQNRVPFKSIESXXXXXXXXXXXXXXXCPLCPKSFACNNNLQTHIRVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGDS-FKCETCGMGFFKKTDLNKHKKIHLP---------GYTPTKNNSLAKAACTTSKESPFPSIECSYCDKRFTYPSELKKHIVKHTKERNFECDVCDKKFTRSNHLFTHKKMHAGAGKPHKCDICGKGYWNKADRDKHRNSSVHKVNTGSDKQPFHCDVCGESFTDITKLRVHSKTHVGNKQNKCAVCDKTFSEASELVEHYQLH--KKPEKCVICEKTFTNQAELRKHFQLH 1539 +C +C FS + L H P NC +C + FS ++H+ H+ +KP++CD CGK ++ ++ Q H ++H E P+K C C K F C++NL H RVHTGEKP++C +CGK FS PS+L+ H +HT K + C +CGK F + NL+ H +HTGE+PY C CG+ F+ S + H +HTG+ +KCE CG GF + + L H+K H G +++ L + E P+ +C C K F+ ++LK H HT E+ + C+ C K F ++++L H+++H+G KP KC+ CGK + A H+ KV+TG +P+ CD CG+ F L +H + H G K KC C K FS+AS L H +H +KP KC +C K F+ ++L+ H ++H Sbjct: 336 KCKQCGKGFSRRSALNVHCKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEK------PYK-------------------CEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQ-GVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPY---KCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGE-KPFKCEECGKSFGRSAHLQAHQ-----KVHTGD--KPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVH 749 HSP 2 Score: 238.81 bits (608), Expect = 8.483e-68 Identity = 152/449 (33.85%), Postives = 238/449 (53.01%), Query Frame = 1 Query: 217 TGSDSLQCGECTILFSSKEELMKHK---IANPLNCRKCFQVFSCPIKYKEHEEYHSKQKPYECDKCGKRYAEKTYYQKHLKMHENE-PVNQNRVPFKSIESXXXXXXXXXXXXXXXCPLCPKSFACNNNLQTHIRVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGD-SFKCETCGMGFFKKTDLNKHKKIHLPGYTPTKNNSLAKAACTTSKESPFPSIECSYCDKRFTYPSELKKHIVKHTKERNFECDVCDKKFTRSNHLFTHKKMHAGAGKPHKCDICGKGYWNKADRDKHRNSSVHK-VNTGSDKQPFHCDVCGESFTDITKLRVHSKTHVGNKQNKCAVCDKTFSEASELVEHYQLH--KKPEKCVICEKTFTNQAELRKHFQLH 1539 +G SL C E F L H+ + L C +C + FS + H++ H +KPY+C +CGK ++ ++ H K+H E P N C C ++F+ ++LQ H R+HTGEKPF+C CGK+FS S L+ H +HT K +KC+ CGK F NL H +HTGE+PY C+ CG+ F PS L+ H +HTG+ S+ C CG GF ++L H+++H + E P+ +C+ C K F S + H+V HT E+ ++C++C K F++S++L H+K H+ KP KC+ CG+G+ N++ R + +H+ ++TG ++P+ C+ CG+ F+ L++H + H G K C C K F +AS L+ H ++H +KP KC C K+F A L+ H ++H Sbjct: 275 SGEKSLTCVERGKGFCYSPVLPVHQKVHVGEKLKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPYN--------------------------CEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQ-RVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVH-------------------TGEKPY---KCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHS-IEKPFKCEECGQGF-NQSSRLQ-----IHQLIHTG--EKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVH 665 HSP 3 Score: 215.312 bits (547), Expect = 1.333e-59 Identity = 136/402 (33.83%), Postives = 209/402 (51.99%), Query Frame = 1 Query: 370 HSKQKPYECDKCGKRYAEKTYYQKHLKMHENEPVNQ--NRVPFKSIESXXXXXXXXXXXXXXXCPLCPKSFACNNNLQTHIRVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGDS-FKCETCGMGFFKKTDLNKHKKIHLPGYTPTKNNSLAKAACTTSKESPFPSIE-------CSYCDKRFTYPSELKKHIVKHTKERNFECDVCDKKFTRSNHLFTHKKMHAGAGKPHKCDICGKGYWNKADRDKHRNSSVHKVNTGSDKQPFHCDVCGESFTDITKLRVHSKTHVGNKQNKCAVCDKTFSEASELVEHYQLH--KKPEKCVICEKTFTNQAELRKHFQLH 1539 H+ QK Y+C++C K +++ + + H ++ E R + ++ +V KC C K F+ +LQTH +VH EKP++C CGK FS SAL H +HT K + C+ CG+AF+ +L+ H +HTGE+P+ C CG+ F S L++H R+HTG+ +KCE CG GF ++L H+++H G P K K S + C+ C K FT S L+ H HT E+ ++C+ C K F R++H H +H G KP+KC+ICGKG+ + H+ + S ++PF C+ CG+ F ++L++H H G K KC C K FS ++L H ++H +KP C C K F + L H ++H Sbjct: 246 HTGQKSYQCNECKKPFSDLSSFDLHQQLQSGEKSLTCVERGKGFCYSPVLPVHQKVHVGEKLKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHC-KVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHT-GEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGE-KPYKCEICGKGFSQSSYLQIHQKAH-------SIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVH 637 HSP 4 Score: 156.377 bits (394), Expect = 6.734e-40 Identity = 101/322 (31.37%), Postives = 163/322 (50.62%), Query Frame = 1 Query: 607 RVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGDSFKCETCGMGFFKKTDLNKHKKIHLP---------GYTPTKNNSLAKAACTTSKESPFPSIECSYCDKRFTYPSELKKHIVKHTKERNFECDVCDKKFTRSNHLFTHKKMHAGAGKPHKCDICGKGYWNKADRDKHRNSSVHKVNTGSDKQPFHCDVCGESFTDITKLRVHSKTHVGNKQNKCAVCDKTFSEASELVEHYQLH--KKPEKCVICEKTFTNQAELRKHFQLH 1539 RVH EK ++ D K H IHT K ++C+ C K F+ L + H + +GE+ C G+ F L H ++H G+ KC+ CG F + L H+K+H+ G ++ ++L + E P+ C C + F+ S L+ H HT E+ F+CD C K F+R++HL +H+++H G KP+KC+ CGKG+ ++ H+ +V+TG ++P+ C+ CG+ F+ + L+ H H G K C VC K F+ +S L H ++H +KP KC C K+F + + H +H Sbjct: 216 RVHKSEKSYRPNDYEKDNMKILTFD-HNSMIHTGQKSYQCNECKKPFSDLSSFDLHQQLQSGEKSLTCVERGKGFCYSPVLPVHQKVHVGEKLKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPY---NCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGE-KPYKCEECGKGFICSSNLYIHQ-----RVHTG--EKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVH 525 HSP 5 Score: 154.451 bits (389), Expect = 3.504e-39 Identity = 91/245 (37.14%), Postives = 125/245 (51.02%), Query Frame = 1 Query: 217 TGSDSLQCGECTILFSSKEEL----MKHKIANPLNCRKCFQVFSCPIKYKEHEEYHSKQKPYECDKCGKRYAEKTYYQKHLKMHENEPVNQNRVPFKSIESXXXXXXXXXXXXXXXCPLCPKSFACNNNLQTHIRVHTGEKPFQCGDCGKAFSDPSALKRHVIAIHTNIKDHKCDICGKAFAILDNLRRHYVIHTGERPYLCKICGERFKNPSQLKTHSRIHTGD-SFKCETCGMGFFKKTDLNK 936 TG +C EC FS + +L H P NC +C +VF H+ HS +KP++C++CGK + + Q H K+H + P+K C C K F + NL H RVHTGEKP++CG+CGK FS S+L+ H ++HT K +KCD+CGK F+ L+ H +HTGE+PY C+ICG+ F S L H RIH GD S+K G + T K Sbjct: 582 TGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDK------PYK-------------------CDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQ-SVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNIRESTQEKK 800 The following BLAST results are available for this feature:
BLAST of TCONS_00069816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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