TCONS_00069812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069812
Unique NameTCONS_00069812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069812 ID=TCONS_00069812|Name=TCONS_00069812|organism=Clytia hemisphaerica|type=transcript|length=833bp
AACAAAATTGGCAGCAGCAAGAATCTGATTCTACACGTCCTTCCAGAAAG
ATTAATCCAAAGAACTCTGAAGGGAAACTATTGACATGTGAAAGCTGTGG
TTCATAGACACTTACTTCCTGAATGTCCAGACAGCTGGGAAAATCTTGct
aaaactaacaaaaacaattcgcaagAATTCTGTCTCTATATTGGAGCAGA
TACATCCAAACCAGATAATGCACTTCTTCGCTCAGAAGCTGCATTTTGTG
CCGTGCTTGACTGTGCTTGTTCGAGCACAGTTTGTGGAACATTCTGGTTT
CAGAACTATACTCAAATGCTCAATGAAgaggagaagaagaaaatcaaaca
GTTCACTGGAGGCAGACTGTTCAAGTTTGGCGGTGGTGAAGTTCTTTCCT
CAACTGCCTGTTACGAAATCCCTGCGTATCTTGCTGGGAAAGAGATAACA
ATCGTTACTGACGTTGTCGTTACTGACGTTGTCGATTCTGACATCCCTCT
TCTGCTGTCCATCAAAGCAATGAAGAAAGCAGGTATCATCCTCGATCTGG
TCAACGACTCAGCTGAGATCTTTGGCAAAGTTGTATCCTTAAATCATACA
TCATCAGGACACTACTGCGTCTCAATTGCCAAAGAATTTGATGTTTCTCA
AGTGTTTGCAGTCAAAATTGCAGAACTGGAAGATAGTGACAGATACAAAG
TTTTACTGAAGCTGCACAGACAATTTGCGCATCCATCGATGGTGAAGCTG
ATATCCCTTCTCAAAGATTCCAACAGTTGGTCAGACGAATTTAAACCCCT
GCTTCTGGAAATCCACCAAAGATGTGAGCTGNN
Run BLAST on NCBI

protein sequence of TCONS_00069812-protein

>TCONS_00069812-protein ID=TCONS_00069812-protein|Name=TCONS_00069812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MLNEEEKKKIKQFTGGRLFKFGGGEVLSSTACYEIPAYLAGKEITIVTDV
VVTDVVDSDIPLLLSIKAMKKAGIILDLVNDSAEIFGKVVSLNHTSSGHY
CVSIAKEFDVSQVFAVKIAELEDSDRYKVLLKLHRQFAHPSMVKLISLLK
DSNSWSDEFKPLLLEIHQRCEL
Run BLAST on NCBI

transcript from alignment at scaffold_508:168309..169141

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069812 ID=TCONS_00069812|Name=TCONS_00069812|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at scaffold_508:168309..169141 (Clytia hemisphaerica)
NNCAGCTCACATCTTTGGTGGATTTCCAGAAGCAGGGGTTTAAATTCGTC
TGACCAACTGTTGGAATCTTTGAGAAGGGATATCAGCTTCACCATCGATG
GATGCGCAAATTGTCTGTGCAGCTTCAGTAAAACTTTGTATCTGTCACTA
TCTTCCAGTTCTGCAATTTTGACTGCAAACACTTGAGAAACATCAAATTC
TTTGGCAATTGAGACGCAGTAGTGTCCTGATGATGTATGATTTAAGGATA
CAACTTTGCCAAAGATCTCAGCTGAGTCGTTGACCAGATCGAGGATGATA
CCTGCTTTCTTCATTGCTTTGATGGACAGCAGAAGAGGGATGTCAGAATC
GACAACGTCAGTAACGACAACGTCAGTAACGATTGTTATCTCTTTCCCAG
CAAGATACGCAGGGATTTCGTAACAGGCAGTTGAGGAAAGAACTTCACCA
CCGCCAAACTTGAACAGTCTGCCTCCAGTGAACtgtttgattttcttctt
ctcctcTTCATTGAGCATTTGAGTATAGTTCTGAAACCAGAATGTTCCAC
AAACTGTGCTCGAACAAGCACAGTCAAGCACGGCACAAAATGCAGCTTCT
GAGCGAAGAAGTGCATTATCTGGTTTGGATGTATCTGCTCCAATATAGAG
ACAGAATTcttgcgaattgtttttgttagttttagCAAGATTTTCCCAGC
TGTCTGGACATTCAGGAAGTAAGTGTCTATGAACCACAGCTTTCACATGT
CAATAGTTTCCCTTCAGAGTTCTTTGGATTAATCTTTCTGGAAGGACGTG
TAGAATCAGATTCTTGCTGCTGCCAATTTTGTT

Coding sequence (CDS) from alignment at scaffold_508:168309..169141

>TCONS_00069812 ID=TCONS_00069812|Name=TCONS_00069812|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_508:168309..169141 (Clytia hemisphaerica)
CAGCTCACATCTTTGGTGGATTTCCAGAAGCAGGGGTTTAAATTCGTCTG
ACCAACTGTTGGAATCTTTGAGAAGGGATATCAGCTTCACCATCGATGGA
TGCGCAAATTGTCTGTGCAGCTTCAGTAAAACTTTGTATCTGTCACTATC
TTCCAGTTCTGCAATTTTGACTGCAAACACTTGAGAAACATCAAATTCTT
TGGCAATTGAGACGCAGTAGTGTCCTGATGATGTATGATTTAAGGATACA
ACTTTGCCAAAGATCTCAGCTGAGTCGTTGACCAGATCGAGGATGATACC
TGCTTTCTTCATTGCTTTGATGGACAGCAGAAGAGGGATGTCAGAATCGA
CAACGTCAGTAACGACAACGTCAGTAACGATTGTTATCTCTTTCCCAGCA
AGATACGCAGGGATTTCGTAACAGGCAGTTGAGGAAAGAACTTCACCACC
GCCAAACTTGAACAGTCTGCCTCCAGTGAACtgtttgattttcttcttct
cctcTTCATTGAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043471XLOC_043471Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069812-proteinTCONS_00069812-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069812-exon-scaffold_508-1491911889:168309..169141TCONS_00069812-exon-scaffold_508-1491911889:168309..169141Clytia hemisphaericaexon
TCONS_00069812-exon-scaffold_508-1510915933:168309..169141TCONS_00069812-exon-scaffold_508-1510915933:168309..169141Clytia hemisphaericaexon
TCONS_00069812-exon-scaffold_508-1575043694:168309..169141TCONS_00069812-exon-scaffold_508-1575043694:168309..169141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_508supercontigscaffold_508:168309..169141 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.39784	3.27679	4.51884	2.70814	2.84989	3.94228	2.5124	4.02854	2.19065	2.95245	2.61755	3.91907	2.1906	1.85797	1.50185	1.70911	1.68846	1.62334	2.44535	2.945	3.58028	4.12357	1.05774	1.63793	2.40876	3.25221	2.57382	1.81787	1.13841	1.27381
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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