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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069809 ID=TCONS_00069809|Name=TCONS_00069809|organism=Clytia hemisphaerica|type=transcript|length=775bp
AAAAATTTGAGACTTTAAAAgtaattgttcttaaattgaaTATTATGAAC
ACTTTTAAGGTTAGGGATTTTGTTACTTTcgacttagttcttataaacca
cGGAAACACAGATAGAAGATCCATTtacgacaaaaacaatagcgtcatca
ttccagccgcggctttcttatactatggttatTCTTGTGTTTCTCACAAA
CAAGAATGTGCTTCTTCATTGGATATGATTGATGGTAGTTGTGTTGACAA
ACAAATGTATGTTGACAATGACCATCGCGATGCGTCTCTTGGTTGGCACT
TGCTCCAGGGAACAAGCATTGAAAGCACAGATTCTTGGATTTCAGTGTGC
TGAGACGTTCAGCCGGTGTCAAATCAACGAAGGTTTTGCATGAGAAATAT
TGAATCAGTTTCATACCACGTGGACCTCTTGTTTGGACATGGTCATTCTT
TCCACAAATGAAACAGATGGTTTGATTGTTCGTTGGTTGACTGGATGGAG
GTGGATTCCATGGTGGAGGATTCGCCTGTGGTCTTGCTGCTGGTGGATTT
GAGTCTGTCTGATGGCCAGATCCACGTCTGGTTGGTTGTTTTGATTGTTC
CTGCTTCTTTGACTTTGATTGAAGAATCGCTCGTTGTTGTTGCATCTTGA
CTTCCTTACCGAGAAAGTCCAGCATTTGTCTCCACTTCCATCTGCCTTCC
TTTGGTATCTCACAGCTGAGGGTTAGCCATCTGATTGATCTCTCCTCACC
AAGTAGATTACAAGCTTGATCGAAT Run BLAST on NCBI protein sequence of TCONS_00069809-protein >TCONS_00069809-protein ID=TCONS_00069809-protein|Name=TCONS_00069809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
FDQACNLLGEERSIRWLTLSCEIPKEGRWKWRQMLDFLGKEVKMQQQRAI
LQSKSKKQEQSKQPTRRGSGHQTDSNPPAARPQANPPPWNPPPSSQPTNN
QTICFICGKNDHVQTRGPRGMKLIQYFSCKTFVDLTPAERLSTLKSKNLC
FQCLFPGASANQETHRDGHCQHTFVCQHNYHQSYPMKKHILVCEKHKNNH
SIRKPRLE Run BLAST on NCBI transcript from alignment at scaffold_508:47839..48613 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069809 ID=TCONS_00069809|Name=TCONS_00069809|organism=Clytia hemisphaerica|type=transcript|length=775bp|location=Sequence derived from alignment at scaffold_508:47839..48613 (Clytia hemisphaerica)
ATTCGATCAAGCTTGTAATCTACTTGGTGAGGAGAGATCAATCAGATGGC
TAACCCTCAGCTGTGAGATACCAAAGGAAGGCAGATGGAAGTGGAGACAA
ATGCTGGACTTTCTCGGTAAGGAAGTCAAGATGCAACAACAACGAGCGAT
TCTTCAATCAAAGTCAAAGAAGCAGGAACAATCAAAACAACCAACCAGAC
GTGGATCTGGCCATCAGACAGACTCAAATCCACCAGCAGCAAGACCACAG
GCGAATCCTCCACCATGGAATCCACCTCCATCCAGTCAACCAACGAACAA
TCAAACCATCTGTTTCATTTGTGGAAAGAATGACCATGTCCAAACAAGAG
GTCCACGTGGTATGAAACTGATTCAATATTTCTCATGCAAAACCTTCGTT
GATTTGACACCGGCTGAACGTCTCAGCACACTGAAATCCAAGAATCTGTG
CTTTCAATGCTTGTTCCCTGGAGCAAGTGCCAACCAAGAGACGCATCGCG
ATGGTCATTGTCAACATACATTTGTTTGTCAACACAACTACCATCAATCA
TATCCAATGAAGAAGCACATTCTTGTTTGTGAGAAACACAAGAataacca
tagtataagaaagccgcggctggaatgatgacgctattgtttttgtcgta
AATGGATCTTCTATCTGTGTTTCCgtggtttataagaactaagtcgAAAG
TAACAAAATCCCTAACCTTAAAAGTGTTCATAATAttcaatttaagaaca
attacTTTTAAAGTCTCAAATTTTT Coding sequence (CDS) from alignment at scaffold_508:47839..48613 >TCONS_00069809 ID=TCONS_00069809|Name=TCONS_00069809|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_508:47839..48613 (Clytia hemisphaerica)
TTCGATCAAGCTTGTAATCTACTTGGTGAGGAGAGATCAATCAGATGGCT
AACCCTCAGCTGTGAGATACCAAAGGAAGGCAGATGGAAGTGGAGACAAA
TGCTGGACTTTCTCGGTAAGGAAGTCAAGATGCAACAACAACGAGCGATT
CTTCAATCAAAGTCAAAGAAGCAGGAACAATCAAAACAACCAACCAGACG
TGGATCTGGCCATCAGACAGACTCAAATCCACCAGCAGCAAGACCACAGG
CGAATCCTCCACCATGGAATCCACCTCCATCCAGTCAACCAACGAACAAT
CAAACCATCTGTTTCATTTGTGGAAAGAATGACCATGTCCAAACAAGAGG
TCCACGTGGTATGAAACTGATTCAATATTTCTCATGCAAAACCTTCGTTG
ATTTGACACCGGCTGAACGTCTCAGCACACTGAAATCCAAGAATCTGTGC
TTTCAATGCTTGTTCCCTGGAGCAAGTGCCAACCAAGAGACGCATCGCGA
TGGTCATTGTCAACATACATTTGTTTGTCAACACAACTACCATCAATCAT
ATCCAATGAAGAAGCACATTCTTGTTTGTGAGAAACACAAGAataaccat
agtataagaaagccgcggctggaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069809-exon-scaffold_508-1491911889:47839..48613 | TCONS_00069809-exon-scaffold_508-1491911889:47839..48613 | Clytia hemisphaerica | exon |
| TCONS_00069809-exon-scaffold_508-1510915933:47839..48613 | TCONS_00069809-exon-scaffold_508-1510915933:47839..48613 | Clytia hemisphaerica | exon |
| TCONS_00069809-exon-scaffold_508-1575043694:47839..48613 | TCONS_00069809-exon-scaffold_508-1575043694:47839..48613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_508 | supercontig | scaffold_508:47839..48613 . |
Blast
The following BLAST results are available for this feature:
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