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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069803 ID=TCONS_00069803|Name=TCONS_00069803|organism=Clytia hemisphaerica|type=transcript|length=1462bp
TATTGAAAACGTTCCAAATATACCGCTACATTGCTTTTCTTCGCTCCAAT
TTGAAAGGCGGGAAAATGTTTCCTTTTGGGTATCTTTGAAATATACTTTT
TGTGGAGTGTATATGATCATCTCGGATCTCGTTTTAAAAGAGACATATAT
AGTATATTTTCCACTCTTCGTCTTCGCAGTTGAAGTTAACGGATCTTATC
TTCGGTTTACGGATGACGCTAGAAGAGGAGTTGATGGGGGCAGATGCATC
AGAACATGGCATCCTTGATTCTAATGCACCATCTATGCTAAAAAGTGGAA
TGAGTCGTGGCGGATCCAGCCGTACATTGGGCAAGAAATATAGCACAATC
ATTAGGAATAAAGAAGTGGCAACAGCGGGAAGCGAAGAGTTACGTAAGCG
GGGCATGACAAACAGCTCTAAAGAAACCGAGTCTGATTTTGGATACATTA
GTTATCACACAGGAGAAGGAGGTTCACCCTTGTATGATCGAGCAGTTAAT
GTGAATCTGAAGTTATGCAGCTCCCGATCTTTCTCCTTAAGATCACCTTT
TGTCCGTAACCAATTGACATCTAACTCATCTCGAGATGAACGAAGAAGCA
TGTCCCTCAATCACAAAGATGCAGTGTTAGAGCTCGCTGACAAGATACCA
ACAACTCAGATACTACACAAAGTCAATAAATCGCCGAAAATATTCGAACA
CAAGTTGTATCGGAGTAATTCGTTCTCTTAACTTTATTAAAAAGTTTTGG
GAAACATTTAGAGATGGTGTAAATTGCATGCAAATATTNACACAAGTTGT
ATCGGAGTAATTCGTTCTCTTAACTTTATTAAAAAGTTTTGGGAAACATT
TAGAGATGGTGTAAATTGCatgcaaatattattttctgatttcttttggT
TAAAATGCATAAAAGTCCATTAGGACTTAAAGTACGATGATTGCTATGTA
TGTTGAGTATCATTTGGAAAAGCACGcagacaaatttaaaaattcaaaaa
tttaaacagcTTGGTTTTCATCACTCACCAGTAAAGTTTAACAACAGAAA
AGAAAATGTCGATGTATAACCGAGACTCAGTTACAAACAAGGAGTTTTTC
TTGATGTTTTATGAAAATCAACTGTTTTTTAGCCAATTCGATTTCATAAT
TAACTGTGGAGATTATCAACAGACAAAATTTGTATTTGATAATAGTGTTA
TCTTATAAAGGGGTATATTCTTTTCAACATTTTGCTGGTAAAGTGGttat
ctttctataatttgtaAGGTTTGTTAAAATTGGAACATTTTTCAGACTTT
AGTTTAATatagaattttgatttttcatgtgaATGGTACACAAGCACAGT
GAAGTACTCATTGCACACTTCCGTTAGAGGTGTGTATCTTTATTAGCCTA
TTTTATAGGATTCGTGCTTCTGTTACAagctattttctattcaatttaaa
gGGGAGGAAGAC Run BLAST on NCBI protein sequence of TCONS_00069803-protein >TCONS_00069803-protein ID=TCONS_00069803-protein|Name=TCONS_00069803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MTLEEELMGADASEHGILDSNAPSMLKSGMSRGGSSRTLGKKYSTIIRNK
EVATAGSEELRKRGMTNSSKETESDFGYISYHTGEGGSPLYDRAVNVNLK
LCSSRSFSLRSPFVRNQLTSNSSRDERRSMSLNHKDAVLELADKIPTTQI
LHKVNKSPKIFEHKLYRSNSFS Run BLAST on NCBI transcript from alignment at scaffold_508:9..1470 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069803 ID=TCONS_00069803|Name=TCONS_00069803|organism=Clytia hemisphaerica|type=transcript|length=1462bp|location=Sequence derived from alignment at scaffold_508:9..1470 (Clytia hemisphaerica)
GTCTTCCTCCCctttaaattgaatagaaaatagctTGTAACAGAAGCACG
AATCCTATAAAATAGGCTAATAAAGATACACACCTCTAACGGAAGTGTGC
AATGAGTACTTCACTGTGCTTGTGTACCATtcacatgaaaaatcaaaatt
ctatATTAAACTAAAGTCTGAAAAATGTTCCAATTTTAACAAACCTtaca
aattatagaaagataaCCACTTTACCAGCAAAATGTTGAAAAGAATATAC
CCCTTTATAAGATAACACTATTATCAAATACAAATTTTGTCTGTTGATAA
TCTCCACAGTTAATTATGAAATCGAATTGGCTAAAAAACAGTTGATTTTC
ATAAAACATCAAGAAAAACTCCTTGTTTGTAACTGAGTCTCGGTTATACA
TCGACATTTTCTTTTCTGTTGTTAAACTTTACTGGTGAGTGATGAAAACC
AAgctgtttaaatttttgaatttttaaatttgtctgCGTGCTTTTCCAAA
TGATACTCAACATACATAGCAATCATCGTACTTTAAGTCCTAATGGACTT
TTATGCATTTTAAccaaaagaaatcagaaaataatatttgcatGCAATTT
ACACCATCTCTAAATGTTTCCCAAAACTTTTTAATAAAGTTAAGAGAACG
AATTACTCCGATACAACTTGTGTNAATATTTGCATGCAATTTACACCATC
TCTAAATGTTTCCCAAAACTTTTTAATAAAGTTAAGAGAACGAATTACTC
CGATACAACTTGTGTTCGAATATTTTCGGCGATTTATTGACTTTGTGTAG
TATCTGAGTTGTTGGTATCTTGTCAGCGAGCTCTAACACTGCATCTTTGT
GATTGAGGGACATGCTTCTTCGTTCATCTCGAGATGAGTTAGATGTCAAT
TGGTTACGGACAAAAGGTGATCTTAAGGAGAAAGATCGGGAGCTGCATAA
CTTCAGATTCACATTAACTGCTCGATCATACAAGGGTGAACCTCCTTCTC
CTGTGTGATAACTAATGTATCCAAAATCAGACTCGGTTTCTTTAGAGCTG
TTTGTCATGCCCCGCTTACGTAACTCTTCGCTTCCCGCTGTTGCCACTTC
TTTATTCCTAATGATTGTGCTATATTTCTTGCCCAATGTACGGCTGGATC
CGCCACGACTCATTCCACTTTTTAGCATAGATGGTGCATTAGAATCAAGG
ATGCCATGTTCTGATGCATCTGCCCCCATCAACTCCTCTTCTAGCGTCAT
CCGTAAACCGAAGATAAGATCCGTTAACTTCAACTGCGAAGACGAAGAGT
GGAAAATATACTATATATGTCTCTTTTAAAACGAGATCCGAGATGATCAT
ATACACTCCACAAAAAGTATATTTCAAAGATACCCAAAAGGAAACATTTT
CCCGCCTTTCAAATTGGAGCGAAGAAAAGCAATGTAGCGGTATATTTGGA
ACGTTTTCAATA Coding sequence (CDS) from alignment at scaffold_508:9..1470 >TCONS_00069803 ID=TCONS_00069803|Name=TCONS_00069803|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_508:9..1470 (Clytia hemisphaerica)
TTAAGAGAACGAATTACTCCGATACAACTTGTGTTCGAATATTTTCGGCG
ATTTATTGACTTTGTGTAGTATCTGAGTTGTTGGTATCTTGTCAGCGAGC
TCTAACACTGCATCTTTGTGATTGAGGGACATGCTTCTTCGTTCATCTCG
AGATGAGTTAGATGTCAATTGGTTACGGACAAAAGGTGATCTTAAGGAGA
AAGATCGGGAGCTGCATAACTTCAGATTCACATTAACTGCTCGATCATAC
AAGGGTGAACCTCCTTCTCCTGTGTGATAACTAATGTATCCAAAATCAGA
CTCGGTTTCTTTAGAGCTGTTTGTCATGCCCCGCTTACGTAACTCTTCGC
TTCCCGCTGTTGCCACTTCTTTATTCCTAATGATTGTGCTATATTTCTTG
CCCAATGTACGGCTGGATCCGCCACGACTCATTCCACTTTTTAGCATAGA
TGGTGCATTAGAATCAAGGATGCCATGTTCTGATGCATCTGCCCCCATCA
ACTCCTCTTCTAGCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069803-exon-scaffold_508-1491911889:9..1470 | TCONS_00069803-exon-scaffold_508-1491911889:9..1470 | Clytia hemisphaerica | exon |
| TCONS_00069803-exon-scaffold_508-1510915933:9..1470 | TCONS_00069803-exon-scaffold_508-1510915933:9..1470 | Clytia hemisphaerica | exon |
| TCONS_00069803-exon-scaffold_508-1575043694:9..1470 | TCONS_00069803-exon-scaffold_508-1575043694:9..1470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_508 | supercontig | scaffold_508:9..1470 . |
Blast
The following BLAST results are available for this feature:
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