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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069802 ID=TCONS_00069802|Name=TCONS_00069802|organism=Clytia hemisphaerica|type=transcript|length=757bp
ATAGGTATTCGGACCAGTGGCGCCGAGAAGAGGATATTCCGGCATAACGA
CGTCGCTCATTTAGAAGAGTTATTGAAAAAGGCCGACCCATCAGTGCCGA
AGATCGTTGCATTTGAAACGGTGTATTCGATGTCTGGAGTGGTGTCCCCC
TTAGAAGAACTTTGTGATGTGGCTCACAAATATGGTGCACTCACTTTCGT
GGATGAGGTGCATGCAGTAGGACTGTACGGCAAACACGGCTCAGGAATCG
GTGAACTTCACGGAGTGTTGGACAAGATGGACATCATTTCGGGGACCCTC
GGTAAAGCTGTTGGATGTATCGGCGGTTATCTGGCTGGTTCAGCGTCGCT
CATTGATACTCTTCGCAGTTACGGTGCAGGATTCATCTTCACCACCGCCC
TACCGCCAGACAAAATTTGCGCCGCTCTCACTTcagttgaaatcttgaaa
agtgAAGAAGGAGAAATATTGAGGCAACGTCATCAAGAGAACGTCAAGTT
GCTTCGAACGAAGTTGTTGAAAGTTGGACTCCCTGTGGAACATTGCACCA
GTCACATTGTCCCTATACAGGTAACTgtcgaaaaatttttaaaagagaaa
CGCGACTGTGTAAATTTACAGTGAAAAGTTGcaatcttttgaaaatattc
gaGCTTTCTTGTTGGAcgtcagtactaaaatgtaagacatacatgagtac
taaaaggattttcgctaatttttgacatacccccacctatttttcgaaaa
tgttatt Run BLAST on NCBI protein sequence of TCONS_00069802-protein >TCONS_00069802-protein ID=TCONS_00069802-protein|Name=TCONS_00069802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
IGIRTSGAEKRIFRHNDVAHLEELLKKADPSVPKIVAFETVYSMSGVVSP
LEELCDVAHKYGALTFVDEVHAVGLYGKHGSGIGELHGVLDKMDIISGTL
GKAVGCIGGYLAGSASLIDTLRSYGAGFIFTTALPPDKICAALTSVEILK
SEEGEILRQRHQENVKLLRTKLLKVGLPVEHCTSHIVPIQVTVEKFLKEK
RDCVNLQ Run BLAST on NCBI transcript from alignment at scaffold_508:159974..161401- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069802 ID=TCONS_00069802|Name=TCONS_00069802|organism=Clytia hemisphaerica|type=transcript|length=1428bp|location=Sequence derived from alignment at scaffold_508:159974..161401- (Clytia hemisphaerica)
ATAGGTATTCGGACCAGTGGCGCCGAGAAGAGGATATTCCGGCATAACGA
CGTCGCTCATTTAGAAGAGTTATTGAAAAAGGCCGACCCATCAGTGCCGA
AGATCGTTGCATTTGAAACGGTGTATTCGATGTCTGGAGTGGTGTCCCCC
TTAGAAGAACTTTGTGATGTGGCTCACAAATATGGTGCACTCACTTTCGT
GGATGAGGTATGCAAATGAATTTATACCAACATTTCCTTTCTCTGTGAAA
CTGATAGCTTAAATCTAAGTGTTTTACACTTATCATGGCATTCAAAAAGG
TCACTGACTACATCAGTCACTTGAACAATTTCAGGAAATGTAAACTTTTT
TCCCATTTGATTTCGCACTTGCTGTACTTTACTTGTATTAATTGTTTGTC
TTTCAATTTTCTTTGCGAAATATTGACAAACGGTAATTCTCGCTAATTCG
AACTTAAATTACTCGCATGTTACTAATAACTCGAACTAATTCTCCGCTTC
TGTCAATGAGAAACTCACTCAAAATCCCTTCTCTGTCATCAAGACAAAAT
TTGTGTCCATTTAAAGTTAGATCTAGTGAAAATGATTTTTATTTCTCCAT
CATTTTTCTCAGGTGCATGCAGTAGGACTGTACGGCAAACACGGCTCAGG
AATCGGTGAACTTCACGGAGTGTTGGACAAGATGGACATCATTTCGGGGA
CCCTCGGTAAAGCTGTTGGATGTATCGGCGGTTATCTGGCTGGTTCAGCG
TCGCTCATTGATACTCTTCGCAGGTATACGATCTGTTTTGACTTGTAAAA
GAATTCATCAAAATATGGATGTGAATTTTTTGGCTAGACATTTTAATTCT
GAGGCCGTAAGGCAACGGAACAACACGAATAACGATGTTTGATCACTCCC
GTAGAACTCGCCTACCTCGAACTCACCGTTTCTCAAACGATAACTTGTTC
CCTTAGTTTTTAAGTTTGGAAGACTCTATGTTCTATCAAAAGATCAAAGG
CGTAAATAACAAACAATTTCAATACTTTTCTTTCGTCAGTTACGGTGCAG
GATTCATCTTCACCACCGCCCTACCGCCAGACAAAATTTGCGCCGCTCTC
ACTTCAGTTGAAATCTTGAAAAGTGAAGAAGGAGAAATATTGAGGCAACG
TCATCAAGAGAACGTCAAGTTGCTTCGAACGAAGTTGTTGAAAGTTGGAC
TCCCTGTGGAACATTGCACCAGTCACATTGTCCCTATACAGGTAACTGTC
GAAAAATTTTTAAAAGAGAAACGCGACTGTGTAAATTTACAGTGAAAAGT
TGCAATCTTTTGAAAATATTCGAGCTTTCTTGTTGGACGTCAGTACTAAA
ATGTAAGACATACATGAGTACTAAAAGGATTTTCGCTAATTTTTGACATA
CCCCCACCTATTTTTCGAAAATGTTATT Coding sequence (CDS) from alignment at scaffold_508:159974..161401- >TCONS_00069802 ID=TCONS_00069802|Name=TCONS_00069802|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_508:159974..161401- (Clytia hemisphaerica)
TTACGGTGCAGGATTCATCTTCACCACCGCCCTACCGCCAGACAAAATTT
GCGCCGCTCTCACTTCAGTTGAAATCTTGAAAAGTGAAGAAGGAGAAATA
TTGAGGCAACGTCATCAAGAGAACGTCAAGTTGCTTCGAACGAAGTTGTT
GAAAGTTGGACTCCCTGTGGAACATTGCACCAGTCACATTGTCCCTATAC
AGGTAACTGTCGAAAAATTTTTAAAAGAGAAACGCGACTGTGTAAATTTA
CAGTGAGTGCATGCAGTAGGACTGTACGGCAAACACGGCTCAGGAATCGG
TGAACTTCACGGAGTGTTGGACAAGATGGACATCATTTCGGGGACCCTCG
GTAAAGCTGTTGGATGTATCGGCGGTTATCTGGCTGGTTCAGCGTCGCTC
ATTGATACTCTTCGCAGATAGGTATTCGGACCAGTGGCGCCGAGAAGAGG
ATATTCCGGCATAACGACGTCGCTCATTTAGAAGAGTTATTGAAAAAGGC
CGACCCATCAGTGCCGAAGATCGTTGCATTTGAAACGGTGTATTCGATGT
CTGGAGTGGTGTCCCCCTTAGAAGAACTTTGTGATGTGGCTCACAAATAT
GGTGCACTCACTTTCGTGGATGAGTTACGGTGCAGGATTCATCTTCACCA
CCGCCCTACCGCCAGACAAAATTTGCGCCGCTCTCACTTCAGTTGAAATC
TTGAAAAGTGAAGAAGGAGAAATATTGAGGCAACGTCATCAAGAGAACGT
CAAGTTGCTTCGAACGAAGTTGTTGAAAGTTGGACTCCCTGTGGAACATT
GCACCAGTCACATTGTCCCTATACAGGTAACTGTCGAAAAATTTTTAAAA
GAGAAACGCGACTGTGTAAATTTACAGTGAGTGCATGCAGTAGGACTGTA
CGGCAAACACGGCTCAGGAATCGGTGAACTTCACGGAGTGTTGGACAAGA
TGGACATCATTTCGGGGACCCTCGGTAAAGCTGTTGGATGTATCGGCGGT
TATCTGGCTGGTTCAGCGTCGCTCATTGATACTCTTCGCAGATAGGTATT
CGGACCAGTGGCGCCGAGAAGAGGATATTCCGGCATAACGACGTCGCTCA
TTTAGAAGAGTTATTGAAAAAGGCCGACCCATCAGTGCCGAAGATCGTTG
CATTTGAAACGGTGTATTCGATGTCTGGAGTGGTGTCCCCCTTAGAAGAA
CTTTGTGATGTGGCTCACAAATATGGTGCACTCACTTTCGTGGATGAGTT
ACGGTGCAGGATTCATCTTCACCACCGCCCTACCGCCAGACAAAATTTGC
GCCGCTCTCACTTCAGTTGAAATCTTGAAAAGTGAAGAAGGAGAAATATT
GAGGCAACGTCATCAAGAGAACGTCAAGTTGCTTCGAACGAAGTTGTTGA
AAGTTGGACTCCCTGTGGAACATTGCACCAGTCACATTGTCCCTATACAG
GTAACTGTCGAAAAATTTTTAAAAGAGAAACGCGACTGTGTAAATTTACA
GTGAGTGCATGCAGTAGGACTGTACGGCAAACACGGCTCAGGAATCGGTG
AACTTCACGGAGTGTTGGACAAGATGGACATCATTTCGGGGACCCTCGGT
AAAGCTGTTGGATGTATCGGCGGTTATCTGGCTGGTTCAGCGTCGCTCAT
TGATACTCTTCGCAGATAGGTATTCGGACCAGTGGCGCCGAGAAGAGGAT
ATTCCGGCATAACGACGTCGCTCATTTAGAAGAGTTATTGAAAAAGGCCG
ACCCATCAGTGCCGAAGATCGTTGCATTTGAAACGGTGTATTCGATGTCT
GGAGTGGTGTCCCCCTTAGAAGAACTTTGTGATGTGGCTCACAAATATGG
TGCACTCACTTTCGTGGATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069802-exon-scaffold_508-1575043694:161195..161401 | TCONS_00069802-exon-scaffold_508-1575043694:161195..161401 | Clytia hemisphaerica | exon |
| TCONS_00069802-exon-scaffold_508-1575043694:160629..160789 | TCONS_00069802-exon-scaffold_508-1575043694:160629..160789 | Clytia hemisphaerica | exon |
| TCONS_00069802-exon-scaffold_508-1575043694:159974..160362 | TCONS_00069802-exon-scaffold_508-1575043694:159974..160362 | Clytia hemisphaerica | exon |
| TCONS_00069802-exon-scaffold_508-1510915933:161195..161401 | TCONS_00069802-exon-scaffold_508-1510915933:161195..161401 | Clytia hemisphaerica | exon |
| TCONS_00069802-exon-scaffold_508-1510915933:160629..160789 | TCONS_00069802-exon-scaffold_508-1510915933:160629..160789 | Clytia hemisphaerica | exon |
| TCONS_00069802-exon-scaffold_508-1510915933:159974..160362 | TCONS_00069802-exon-scaffold_508-1510915933:159974..160362 | Clytia hemisphaerica | exon |
| TCONS_00069802-exon-scaffold_508-1491911889:161195..161401 | TCONS_00069802-exon-scaffold_508-1491911889:161195..161401 | Clytia hemisphaerica | exon |
| TCONS_00069802-exon-scaffold_508-1491911889:160629..160789 | TCONS_00069802-exon-scaffold_508-1491911889:160629..160789 | Clytia hemisphaerica | exon |
| TCONS_00069802-exon-scaffold_508-1491911889:159974..160362 | TCONS_00069802-exon-scaffold_508-1491911889:159974..160362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_508 | supercontig | scaffold_508:159974..161401 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009058 | biosynthetic process |
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030170 | pyridoxal phosphate binding |
| GO:0003824 | catalytic activity |
| GO:0016740 | transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009058 |
biosynthetic process |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0030170 |
pyridoxal phosphate binding |
| molecular_function |
GO:0016740 |
transferase activity |
Blast
BLAST of TCONS_00069802 vs. Swiss-Prot (Human)
Match: HEM1 (5-aminolevulinate synthase, nonspecific, mitochondrial OS=Homo sapiens GN=ALAS1 PE=1 SV=2) HSP 1 Score: 270.011 bits (689), Expect = 2.584e-85 Identity = 132/190 (69.47%), Postives = 157/190 (82.63%), Query Frame = 1
Query: 4 GIRTSGAEKRIFRHNDVAHLEELLKKADPSVPKIVAFETVYSMSGVVSPLEELCDVAHKYGALTFVDEVHAVGLYGKHGSGIGELHGVLDKMDIISGTLGKAVGCIGGYLAGSASLIDTLRSYGAGFIFTTALPPDKICAALTSVEILKSEEGEILRQRHQENVKLLRTKLLKVGLPVEHCTSHIVPIQV 573
GIR S K IFRHNDV+HL ELL+++DPSVPKIVAFETV+SM G V PLEELCDVAH++GA+TFVDEVHAVGLYG G GIG+ GV+ KMDIISGTLGKA GC+GGY+A ++SLIDT+RSY AGFIFTT+LPP + AL SV ILKS EG +LR++HQ NVKL+R L+ GLPV HC SHI+P++V
Sbjct: 345 GIRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRV 534
The following BLAST results are available for this feature:
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