TCONS_00069796 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069796
Unique Name	TCONS_00069796
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2286

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_508:138229..143814-

transcript sequence

>TCONS_00069796 ID=TCONS_00069796|Name=TCONS_00069796|organism=Clytia hemisphaerica|type=transcript|length=2286bp
tgaaaatatattcgtTCTGATATCCTTTCAACAGatagataaaaatgaag
aaatttaaaacatatgGAAAGTATAAAACTTCTAAGAACCTCAAATCTGA
TGATTGGGATGAAATTGTTGGTGTGAAAGCTGATATCAGGCCTCCAGAAG
TGTCAGGGATTTCAATGTTAAGAAACAAGGAAAATAGAGGGCCCAACACT
GATTCACCAACCACTGATGAAACGTTTGATCAGAGTGAACATTTTAGGGA
CCAAGGAGATGAAATTGATGAAGTGTTTCGCAAAGTAAAGCCAATTCAGA
TACATAAGATGGCTGGTTTGTTTGAGGGTTTATCAGTCAGCGATCATTCA
ACTCCCATTGTTTTATGCGAAGATACCCCTCCCTCGCCCAATTCTAAAGG
AGACACTCCTCTGAGATCTACATCGCTAAAGTCAAAAGCTGACACACCTT
TGAAAGCACCTAAGAAGAATGGTGAAAGATTGTCTTCTACTGACTATAat
tttgcaTGTCGGAAGGTGGTCAACATCAGTTTGGGAGACAATGGAAAGAA
GCGATATGAGATTATCAGTATAAATTCTTCATGTTGCTCTGAAACTTCAA
ACTTAACGCCTCAAACAAATGTGTCTTTCAAAgaTGCTTTGGCAAAATCT
TTTACATTTGATGGTGccgaaaaaaagattttgaatttttgcggtcaaaa
CGATGTAATTCCATTACAGAATGTTGTCGAGAAAAGTATTGAACGTAAAA
TTGGTGAAGGGTCGTATGGAGAGGTTTATTTGAAGAAACAAAATCATTGT
CTAACTGCTTTGAAGATCGTCCCGGTTGGTCACAATACAACAGAACAAAT
GAAGCTGGATGATATACTATCAGAGATTGCCATTTCCAAAAAGCTGTCTT
GTTGGAAGCAACATAGTCATgatAAGAAGCTCTATCCTGAAAATTGTGTT
GAGGGCTTCATTGAATTGAAAAGTTTAAGTTATTGTAAAGGCCCATTCAC
ACGACATTTGATTGATCTTTGGGAGGAATGGGAAGAAGATAAAAAGAATG
ACTGCCAAAACAACCACCCTGAAGTTTATAGTGAAAATCAAAGGTATGTG
GTATTTGAGAACCGATTTGGGGGACAGGATCTCGAGAAATGCAAAATCAC
CACCATGAAAGAAGCAATGAGCATCTTAAAACAACTGGTTGCCACCCTTG
CATCTGCAGAACTTTCTATGCAGTTCGAACACCGTGATTTGCACTGGGGC
AACATTTTGATCGAGAAAATGGAAGAGAAGAACAAGAATTTGTACATCCT
GGTGGACGATGAAGAATACGTGATACCTTCTTGTGGTCTTGTTGTCACCA
TCATTGACTTCACGTTGGCTCGTCTTCTCAGTGAGGATTGTGTGGTGTAT
ACGGATTTGAGTGAAGAAGATGTTTTATTCGAAGGAGAGGGAGATGAACA
ATTCGATGTTTACCGACAGATGAAATCGCATAACCATAACGAATGGGAGG
CATTCAATCCCTTCACCAATGTGTTATGGATTCATTACATCACCAACAAA
CTAGCTTCCAAGCTTCGTAAAAATGCCACCATGAAGAAGTTCGCTGCTCG
TGTACTAGACTACAAATCCTGTCACGATATCTTATTGGAGGACGTATTGT
TTCGATGACGTAATAATTAATTGAAGAGGAGGTGACAACATTGCATGGCT
GTGATAGCCATAGAATAATTCAGGTAACCTCTTCGTCTCGAAATGCCACT
TTATTTTATGATCAGTTGTTGCTGATCTGAACTACTGCAGAATTGGCAAG
ATTTGTGACAGGCTTCGAACACAAAACAAGCTGAAAATCGCTTCTATCTT
AGTGATTGGTCTATTTGGAACCCTTCTCTTACGACAGAAATATGGAGTCA
TTTGTAATTTCAGCCCCTCTACGAGAGGGACGTTACGACGAACTCGTACA
GGAAATCTAATACATTTTCAGTATTATACGCTGTTCAGCTTGTACATATG
CAAAACACTGGATGAGTAACTTTTGTTTTATAAAATTGCATATCAATTAT
AATGCCAATGGTACACTAGATTTTTATAAATTGAATTATGTATATTAAAT
GACAGAAATCAATGGGAAATTGTCTAACTGGATTTATTTTCTAGATCACT
TAATCAGCTTAGGTTGtaataaacatttattttttaaatttcatcattat
aTACTGTATATTTATTACTTTACAATGAAaactattttgataaaacaatg
aATTTCAAACCTTGACATGATGCTTCTTTTCATTAT

Run BLAST on NCBI

transcript from alignment at scaffold_508:138229..143814-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069796 ID=TCONS_00069796|Name=TCONS_00069796|organism=Clytia hemisphaerica|type=transcript|length=5586bp|location=Sequence derived from alignment at scaffold_508:138229..143814- (Clytia hemisphaerica)
TGAAAATATATTCGTTCTGATATCCTTTCAACAGATAGATAAAAATGAAG
AAATTTAAAACATATGGAAAGTATAAAACTTCTAAGAACCTCAAATCTGA
TGATTGGGATGAAATTGTTGGTGTGAAAGCTGATATCAGGTATTTGTTTT
TTTGTGATTTTTCTCACAGGGTTTGATACCATCCCAGACTATTATTGTCT
TTTACAAACACTTACATGTTCTATTAAATCCTACTTCCTGGTCACCATAC
TATTTATTGTTAGGGCCCCTCAAGTTTACAGTTGTTTGATTATTACTTTA
GGCCTCCAGAAGTGTCAGGGATTTCAATGTTAAGAAACAAGGAAAATAGA
GGGCCCAACACTGATTCACCAACCACTGATGAAACGTTTGATCAGAGTGA
ACATTTTAGGGACCAAGGAGATGAAATTGATGAAGTGTTTCGCAAAGTAA
AGCCAATTCAGATACATAAGATGGCTGGTTTGTTTGAGGGTTTATCAGTC
AGCGATCATTCAACTCCCATTGTTTTATGCGAAGATACCCCTCCCTCGCC
CAATTCTAAAGGAGACACTCCTCTGAGATCTACATCGCTAAAGTCAAAAG
CTGACACACCTTTGAAAGCACCTAAGAAGAATGGTGAAAGATTGTCTTCT
ACTGACTATAGTAAGTTTACTGATGTTACTAAAACAATATTTTTGATAAA
AATAAAAAAGTAAGATACAAAAAGTTGATCTATTATATTTGTCTCAATTT
GTCCTAGCACGCCAACTTGCATTCATTGTTTTTTTAGATTTTGCATGTCG
GAAGGTGGTCAACATCAGTTTGGGAGACAATGGAAAGAAGCGATATGAGA
TTATCAGTATAAATTCTTCATGTTGCTCTGAAACTTCAAACTTAACGCCT
CAAACAAATGTGTCTTTCAAAGTATGAATTTTGTTTAATAGAAAAATTTC
ACAATTAGCTAGGGACTTTGTGTGTGGTACCAATACCACACACTTGTGTA
GCAAGGAATGTTTGCAAATAAACTTTTTCTCAAAAAAGGTTTCTTGGTTT
AATTTCGAAGTAAGATGAGAACGTCTAGATACCAAAATAAATTTCCCTTT
TTTTCTTTTTGAAGGATGCTTTGGCAAAATCTTTTACATTTGATGGTGCC
GAAAAAAAGATTTTGAATTTTTGCGGTCAAAACGATGTAATTCCATTACA
GAATGTTGTCGAGAAAAGGTAGGGTTGCATTTTTCTTCGTTGAAGTGAGA
AAAATTTATTTTCAAAATTTTGGAGAAAAAAAGAATCCCTATTCCAGAAA
GAGTATTAAGATTTTAAAAAATTATCTCTTATCTTAAAAATCGTTTAAAA
ACCAAGGGGTCTCAAAAATTCCGACGGAAATATAAGGGGATACCTAAAAA
TTTGTCTAAAAATCTAGCTGGTAAAAGGGTTCACGGGGTTCGACCTTTCA
ACAATAATCTCCGCCAAAATGACACAGGCAAACATTAAGGCTCAAAGCGT
AAGCTTCACACTGTCCAGAAAACTACATTTAGTCGTTAGATATGTTGACA
TAATGGCGTCGATGTTTCCGTGGACTTAAAGCCCTATCAGTTTGGTTGAA
TTTAACCCGACATTCATATCAAGTACACAAAACTTAAAATTATGACGTTC
ATCATACCTTTTACTCTACTTACCACTACATACTAACTACCTACTCTACC
ATTCTGCCTTCGAAAACAAATCATTTTGAAACGCCATTTTCTCGATAAAC
ATCTATTTTTGTACACTGGTTTTAGTACCCCTCTCATCGAAGAAGTTTTC
GTATTCAATAAAGCTCACTCGTTCGTATTCTATTCTTTCAGTATTGAACG
TAAAATTGGTGAAGGGTCGTATGGAGAGGTTTATTTGAAGAAACAAAATC
ATTGTCTAACTGCTTTGAAGGTAACCAAATGTGCCTTCTCAGTTCTTAAT
CATGTTTAAAAAAATAAGCTTTTGTAATTGAATTTTGAATATCATTTTTA
CAAGGTTAAGGTTTGCATAAAATTGTCTGGTGGTATAAGATAAGGTATTA
ATAAATGAAAGCAGATATTAAATCTACATTGGATTTGCTTGGGTACCTTA
TAAAATTCAGGTGTGTTGGCTTAGGGCATAATGATTTCATAAAGCTATCC
TGTATTAGATCGTCCCGGTTGGTCACAATACAACAGAACAAATGAAGCTG
GATGATATACTATCAGAGATTGCCATTTCCAAGTAAAATTCTTTCATATC
TTATTCACTTATAACCCCTTAATTGCCAATGTCGAGTATATTGGACATGC
GCTATATAAGAGGGCGAAGCCCTCCTGTAATGCCCAGCTTATTTTAAATC
GTCATTTTTGGTCCAACTCATAGGAATTGCATTGTGCTTCATTGTGCTTC
GTCAAGCAAAAAAAAAATTAAAAGCTATTCTTTCTAGCGAGATTTTAAGC
CAAAAAGTCAAAAAATGCAAAAATTTGACAAAAATCCAATTTTTTGAGAT
TTTGACCGTTTTTGACCATTTTTGGTCAACGAGTGAACCCAGAACCTCCA
AATTTGGCCCCGTTTTACTTTTTTCTGTCTTCTAGCGGATTGATTTGGAA
GTTTTACCACTGGGCATCTTCCCGTCGTTCAGTCAGGTCCGCAGCTGCTT
TAATTCCGCTAACCTACCCCCTTTTTAGCCGCCACCTACCGCGCGATTTA
TTTATTCAAATGAAAGAGGAGACTCTCAGCTATCCAACGAGCTATGAATG
AACGAGCTTCTCACTCCTTCTAGATCCGGAGATTAAGCCTTTGAAGTTTG
ACATAGTGATTTTCTTAAAAAACTTCTTAAAAAAGGACTGTGACACTTAA
AGGGTTAGTAAAGGTTCAGTAAACAATAAAAAACAATAAAAATAACGAGC
TTCAAATTATACCAACACGAAAACCCATAAATTTCCATCTCCTTTTTTCA
GAAAGCTGTCTTGTTGGAAGCAACATAGTCATGTAAGAGAACCACCTTTA
CCCCATGAAAAACTATCTTCATTCATTCACACAAAGCAAAACTGATTTGA
TAGTTTTTTCTTCTCTTTTTCTTATCGAGCTCTTTATAGAATTATTTTCA
CATCGATGATAAATATATTTTTTTAATTTTAGGATAAGAAGCTCTATCCT
GAAAATTGTGTTGAGGGCTTCATTGAATTGAAAAGGTAGATAGACAAAAT
GTTTGTCGGACTCTTGCTAAAAAACTTCCATATAATAGTCCCTATACTTT
AGTTTGCTTTTGTTCGAGGGAGTCTCCGATGTAAAAAAAAAAACAAACAC
AGCTCATTCTTGAATACTCAATATTATCTTACCTTTGTAGCTTCTTGCTT
CTAGTTTAAGTTATTGTAAAGGCCCATTCACACGACATTTGATTGATCTT
TGGGAGGAATGGGAAGAAGATAAAAAGAATGACTGCCAAAACAACCACCC
TGGTAAGAAACAACCAATAAGAACTTGTGTATTAAGTACTACTACTTTTT
GAGTTTATAGCTTTGTATGTTTTTTATGCTTTTTAATTTTGAGCTTGCAT
GGTTAACATTGTAAAACGCATTCATTGTTTTAATCGCTTCAACTTAAGAT
TTATTGATTCTTATCAAAAGAACTCGCATTCTTTGCAATGGATTTAAATC
AAACCCCGTGCATTGTTTTTTATTAAATTATTTTTTTAAAAGCTATACGA
AATTTTCTCTCAAATGTTATTTATTGACGCCTAACCCATTTGTTTTTAGC
TTCACAGAAAACGGCTTCAGAGTCTTGCAAATTGTTAGACGCTTCTAATT
AGGCAATTCATAGACCTTTCAATACGGCACCCGGCATCTTCCACAACGAA
AAGCCAGTAATTATTATTCTCACTTTCGAAATTCATACTTTGTTCTCTTT
TGATTTTCAGAAGTTTATAGTGAAAATCAAAGGTATGTGGTATTTGAGAA
CCGATTTGGGGGACAGGATCTCGAGAAATGCAAAATCACCACCATGAAAG
AAGCAATGAGCATCTTAAAACAAGTAAATTCTTTCTTCCCTCTATTCATC
ATGCAACCTACTCTTCGTTATTATTATAATAAAAGTTAGATTTGGTTGTC
AGAGTTGAAGTATTTAAATCCTCCCTTTATACTTGTTTTGCAGCTGGTTG
CCACCCTTGCATCTGCAGAACTTTCTATGCAGTTCGAACACCGTGATTTG
CACTGGGGCAACATTTTGATCGAGAAAATGGAAGAGAAGAACAAGAATTT
GTACATCCTGGTGGACGATGAAGAATACGTGATACCTTCTTGTGGTCTTG
TTGTCACCATCATTGACTTCACGTTGGCTCGTCTTCTCAGTGGTAAGCCT
TGTTTGTAAATGTTAAGTGCTATTAACTTTCTTATACACACTTTGAATTG
AATATTACTGGATGCATACGAAAGCACGCACTAAAAAAGTTTTGTAGACG
GTCATAGGATGGAAGTATGTACAATATTTCATTATTTCAGAGGATTGTGT
GGTGTATACGGATTTGAGTGAAGAAGATGTTTTATTCGAAGGAGAGGGAG
ATGAACAATTCGATGTTTACCGACAGATGAAATCGCATAACCAGTAAGTC
CCCCCTTCTCATACATGGTTTTTTCTTACCAACGAATAATTTATTGAATA
AAATGCTGAGTTTGCAATTATTAAAAACGAATCAAAATATGAATCTTAAT
CACTTTATGTTGTATTAATTATGTGTGTTCTTAGTTGAATACTGTAACTA
AGAACGCCTATAGTTTTCCTTCTTTTTCTTTCACAGTAACGAATGGGAGG
CATTCAATCCCTTCACCAATGTGTTATGGATTCATTACATCACCAACAAA
CTAGCTTCCAAGCTTCGTAAAAATGCCACCATGAAGAAGTTCGCTGCTCG
TGTACTAGACTACAAATCCTGTCACGATATCTTATTGGAGGACGTATTGT
TTCGATGACGTAATAATTAATTGAAGAGGAGGTGACAACATTGCATGGCT
GTGATAGCCATAGAATAATTCAGGTAACCTCTTCGTCTCGAAATGCCACT
TTATTTTATGATCAGTTGTTGCTGATCTGAACTACTGCAGAATTGGCAAG
ATTTGTGACAGGCTTCGAACACAAAACAAGCTGAAAATCGCTTCTATCTT
AGTGATTGGTCTATTTGGAACCCTTCTCTTACGACAGAAATATGGAGTCA
TTTGTAATTTCAGCCCCTCTACGAGAGGGACGTTACGACGAACTCGTACA
GGAAATCTAATACATTTTCAGTATTATACGCTGTTCAGCTTGTACATATG
CAAAACACTGGATGAGTAACTTTTGTTTTATAAAATTGCATATCAATTAT
AATGCCAATGGTACACTAGATTTTTATAAATTGAATTATGTATATTAAAT
GACAGAAATCAATGGGAAATTGTCTAACTGGATTTATTTTCTAGATCACT
TAATCAGCTTAGGTTGTAATAAACATTTATTTTTTAAATTTCATCATTAT
ATACTGTATATTTATTACTTTACAATGAAAACTATTTTGATAAAACAATG
AATTTCAAACCTTGACATGATGCTTCTTTTCATTAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043459	XLOC_043459	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_508	supercontig	scaffold_508:138229..143814 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.3777	17.2088	5.32635	1.19114	48.2343	38.6669	15.4241	15.1193	8.10901	9.40541	4.59371	4.86548	3.91998	4.66095	7.51663	6.13084	14.3562	9.49162	1.79005	2.48084	3.92567	4.59566	17.5116	13.7927	11.4209	11.3784	4.42672	1.84973	7.38289	9.59492

Blast

[Close]

BLAST of TCONS_00069796 vs. Swiss-Prot (Human)
Match: HASP (Serine/threonine-protein kinase haspin OS=Homo sapiens GN=GSG2 PE=1 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 1.854e-60
Identity = 128/350 (36.57%), Postives = 201/350 (57.43%), Query Frame = 3

Query:  672 KKILNFCGQNDVIPLQNVVE-KSIER--KIGEGSYGEVYLKKQNHCLTALKIVPVGH----NTTEQMKLDDILSEIAISKKLSCWKQHSHDKKLYPENC--VEGFIELKSLSYCKGPFTRHLIDLWEEWEEDKKNDCQNNHPEVYSENQRYVVFENRFGGQDLE--KCKITTMKEAMSILKQLVATLASAELSMQFEHRDLHWGNILIEKMEEKNKNLYILVDDEEYVIPSCGLVVTIIDFTLARLLSEDCVVYTDLSEEDVLFEGEGDEQFDVYRQMKSHNHNEWEAFNPFTNVLWIHYITNKLASKLR-----KNATMKK-------FAARVLDYKSCHDILLEDVLF 1652
            +K+   C Q   +P  + +  + ++R  KIGEG +GEV+    +H   A+KI+ +      N + Q   ++IL EI ISK+LS          L  E C   EGFI L S+   +G +   L+  W+ +   K +   N+ P+ + ++Q ++V E  FGG DLE  + K++++  A SIL QL A+LA AE S++FEHRDLHWGN+     +   K L+  ++ +   IPSCGL V+IID+TL+RL  +  VV+ D+S ++ LF G+GD QFD+YR MK  N+N W  ++P++NVLW+HY+T+K+  ++          MK+       F   +L++ S  D+L +  LF
Sbjct:  461 EKVYGECSQKGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSL---------LSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGS--ANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNV--LLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSLF 797

The following BLAST results are available for this feature:

BLAST of TCONS_00069796 vs. Swiss-Prot (Human)

BLAST of TCONS_00069796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HASP	1.854e-60	36.57	Serine/threonine-protein kinase haspin OS=Homo sap...	[more]

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TCONS_00069796 (transcript) - C. hemisphaerica