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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069795 ID=TCONS_00069795|Name=TCONS_00069795|organism=Clytia hemisphaerica|type=transcript|length=2283bpRun BLAST on NCBI protein sequence of TCONS_00069795-protein >TCONS_00069795-protein ID=TCONS_00069795-protein|Name=TCONS_00069795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp KTYGKYKTSKNLKSDDWDEIVGVKADIRPPEVSGISMLRNKENRGPNTDSRun BLAST on NCBI transcript from alignment at scaffold_508:138229..143760- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069795 ID=TCONS_00069795|Name=TCONS_00069795|organism=Clytia hemisphaerica|type=transcript|length=5532bp|location=Sequence derived from alignment at scaffold_508:138229..143760- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_508:138229..143760- >TCONS_00069795 ID=TCONS_00069795|Name=TCONS_00069795|organism=Clytia hemisphaerica|type=CDS|length=23142bp|location=Sequence derived from alignment at scaffold_508:138229..143760- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069795 vs. Swiss-Prot (Human)
Match: HASP (Serine/threonine-protein kinase haspin OS=Homo sapiens GN=GSG2 PE=1 SV=3) HSP 1 Score: 207.994 bits (528), Expect = 1.170e-56 Identity = 126/367 (34.33%), Postives = 198/367 (53.95%), Query Frame = 3
Query: 618 KKILNFCGQNDVIPLQNVVE-KSIER--KIGEGSYGEVYLKKQNHCLTALKIVPVGH----NTTEQMKLDDILSEIAISNGLIWKFYHWASSRRSVRKLSCWKQHSHDKKLYPENC--VEGFIELKSLSYCKGPFTRHLIDLWEEWEEDKKNDCQNNHPEVYSENQRYVVFENRFGGQDLE--KCKITTMKEAMSILKQLVATLASAELSMQFEHRDLHWGNILIEKMEEKNKNLYILVDDEEYVIPSCGLVVTIIDFTLARLLSEDCVVYTDLSEEDVLFEGEGDEQFDVYRQMKSHNHNEWEAFNPFTNVLWIHYITNKLASKLR-----KNATMKK-------FAARVLDYKSCHDILLEDVLF 1649
+K+ C Q +P + + + ++R KIGEG +GEV+ +H A+KI+ + N + Q ++IL EI IS L L E C EGFI L S+ +G + L+ W+ + K + N+ P+ + ++Q ++V E FGG DLE + K++++ A SIL QL A+LA AE S++FEHRDLHWGN+ + K L+ ++ + IPSCGL V+IID+TL+RL + VV+ D+S ++ LF G+GD QFD+YR MK N+N W ++P++NVLW+HY+T+K+ ++ MK+ F +L++ S D+L + LF
Sbjct: 461 EKVYGECSQKGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSL--------------------------LSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGS--ANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNV--LLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSLF 797 The following BLAST results are available for this feature:
BLAST of TCONS_00069795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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