TCONS_00069793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069793
Unique NameTCONS_00069793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069793 ID=TCONS_00069793|Name=TCONS_00069793|organism=Clytia hemisphaerica|type=transcript|length=1091bp
cttgttcattgggtaaatatctgggggtctacaattgggcctatgaataa
tttgaagccactgaagttgagcccagtgcgttgcgcacgttcgactataa
aGAAAGTCAATTTTGTGGTAGCTACTgttattgattttttctttaatttc
attACAGAGAGCACTATTGGTGTTTTACAAAGAGTTAATTTCTCTTAACA
ATGGAGAAATCTCCAAATAATCCCCCGCGAGTGATTCTTTCAAGTGAAGA
AAAGGCTACAATATCAAAGTCTGTGCTCCTGGAAAAGTGGGAGCGACAAG
AGGAATATATTGATCACTTGCTATCAAAATCAGGAGACAATTCAAATGAG
AAATTGAAACTTCAACAACAAGAAGCCACACGCAGAGAAAACGTTTTGCT
GATGAGGCTTGCAACTAAAGAACAAGAAATGCAAGAACTATTGAGTCAAA
TCCAAGAGCTTAAAGAAAAGCAAGCACCATCCACTGCCCAACTTCAATCA
ATGCTTATTGACCCTGCTGTTAATTTACTATTTGAAAAGATGAAAACAGA
ACTAACAGAGACTAAGGACAGACTtgaacaagcacaaaatgatCTAAGTG
CATGGAAATTCACTCCAGACAGGTAAAGCGAAAAACTTCGATGAAATGAT
GTGAAATGTTTATTGGTGTAAACTGATACAACAAGGCTTCGTGGCAAGAG
CAGTCTTAATGACATTCAAAGGAAAGACAATACCTTGCCTTAGTTGAAAA
CTATTACTCACCAACCTGTATCAGCaccaaacattttgttttttactttt
aagaACTCATTCGAGTTGATTATTTGGGAATAAGGACCTTTTGCCACTAT
GGCCTTTAACAGACTCTCTGATGAGACTATTATAGACTATATTATAAGGA
ATCAGACTTACTCCTCAATGACATAAAGTGACAATAAACAATGACAAAAT
AATGCAGTGTTTCCTTTTAAAAGGTCGgttatttttcaattcatcCTTGC
AATTTGGCCAATGTTAAATGGATATGTTTGGGTTGTTATATTGAAAGGAG
TCTTAATCAGCATTATGAAAATCAGAAGGTTTACATATAGG
Run BLAST on NCBI

transcript from alignment at scaffold_508:102388..106782-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069793 ID=TCONS_00069793|Name=TCONS_00069793|organism=Clytia hemisphaerica|type=transcript|length=4395bp|location=Sequence derived from alignment at scaffold_508:102388..106782- (Clytia hemisphaerica)
CTTGTTCATTGGGTAAATATCTGGGGGTCTACAATTGGGCCTATGAATAA
TTTGAAGCCACTGAAGTTGAGCCCAGTGCGTTGCGCACGTTCGACTATAA
AGAAAGTCAATTTTGTGGTAGCTACTGTTATTGATTTTTTCTTTAATTTC
ATTACAGAGAGCACTATTGGTGTTTTACAAAGAGTTAATTTCTCTTAACA
ATGGAGAAATCTCCAAATAATCCCCCGCGAGTGATTCTTTCAAGTGAAGA
AAAGGCTACAATATCAAAGTCTGTGCTCCTGGAAAAGTAAGTCATAATTT
GAATATTTGAATTTGTACTTTCTTTCCTCAAGCTCATTTTTAAAAGTATT
TTACCGAAAAAATTGATTCTCTGTTTTAGGTGGGAGCGACAAGAGGAATA
TATTGATCACTTGCTATCAAAATCAGGTATAATAAGTTACAACTGTAATT
CGCATGATGAGCTTTTTTTCTTGTTTGGCGCCCCTACAAAGAAAGCAATT
AATCCTTAATTGTATTCTGTAGAGAGCAATTACAAAATTGATTTTAAGGT
TTTTTCTTACATTTTTTTCATAAACGTTTTATTTGGTTTCGAAATTCATT
TTTGTGAGAAAGAAAATCTATAAACAACAATAAAAGAAAAACATAAAGAG
AAGAGAAAGATAAAACTTTCAGTGCTAGTAACTTTCCTAACTGGGAAAAA
CTAGTAAAACCCAATGTGCGATTAGCTCAGATTAGCTCGTAATCACATAA
TAACTCGTACAATTCAAAAATTGAACTCATGATTTTTTTGTTTCAAATTT
TCCTTTCTCGGAAAATTAATTTTAAAAAATCACTCATGCAATTATTTTTG
AAATTAGCTCGTAATCACATAATAACTCGTACAATTCAAAAATTGAACTC
ATGATTTTTTTGTTTCAAATTTTCCTTTCTCGGAAAATTAATTTGAAAAA
ATCACTCATGCAATTATTTTTGAAATTCACTCGTTATCATGTGATATATA
CTAATTTTAGTCTTATCACATACGCATCAATTTAGAAGTTATTTAATTGA
TTTGTCACATGGCTCGCACCCCCCTCCCCCCGCCTGGAGCAAGGGGGCTA
CACCTAAAATTTGCCATATAAGAGGTGGGAGCTGCTTGTTTTTCCCAACA
GGCGGGGGAGCTCTATCTTGGGGGGGGGACCTGCATTAGTTTATGTAACT
CTGGGGGCTAAATAACACTTTCTAAATATTTTTCTTTACTGTTGCCCTGT
TGGTTTTTAATTTCTCTAAACCTTTATGTTTTCATGCAAAGTGTGATCTG
ATCCTTAAAATGCAAAAATGAAGACATTCTATTGCATTCTCTGAAAGTGC
TCACACATGTAAATAGAGCTTTGTGAATGCCATAAAATTTTTCTATATTT
TTTTTTATCAGGCTGGGGGGACCTTGTTCTCGGGTGGGAACCTAAATTTG
GCGGGGGACCTAGAACCCCAGTCAGAGCCATGTGTCAATTACTTTAGGCG
TGCAAAGTAACTTTTTGGTACTGATAATATAATAAAAAGCTGATTCTGTT
CAAAAAAGAATGACACATTGGAAAAATGCAATTTTTGTTGATTTTGGATA
ATGTCTTGTAACTTCTTAGCAAATGTTTCATGAGAGAGGTGAAAATACAG
GATTGTGGATTAGGACTCTAGGAATTCACTGGAATTTTTTTTTATCAAAA
TGTGTAGTTTTGAGGCTAATATTACCCTTTTCCTATCTTTTTTTGAAATA
GCCTCAATTAAGCACATATTGAATATCCACATTTGGAACTGGTTCAAAGC
TGAAGATCACAGATTGAATTTTTCTAAGATATACTTATGTGAAAGAATTT
CAAGTGATAAATGTGAAAAATGGTGGCTCGAATTCGCTGTATTGATATTT
TTTCAATAATAAAAAAACAATATAGCAAATGAATACTAGTGATGAAAATA
ATGAATCTGGTGTTCTTGAAAAATTAGTAAAAAATAGACCATATTTGAAG
TATTTACTTACTAATTTGTGAAATCATGCGGCTAATATTCCCACTTTTTT
GAAAAAAGGCCCTTATTTTAAATGGTAGCCACACCCATTCACAAAAGAAT
TCCAAAGACCTGAATTGTTTGAGAATGTAGCTTGAAGATCAAATATTCAC
TTTCTGAATTCAAAAGTATCAACTAATAGTTGCCCTGTGATTCTACGTGG
CTAAAAAGACTTACTAAAATTTCCGGATTGTTAAAAAGGCTACCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTTGATACCTTG
CATGCCTTTCTTTAAAATTGATATGTGATTAATTGTGGCAATAAAACATG
ACAGGGAAAATCTATAAATTAGGCTTAAAATGAAGAAAAACAACTATTTA
CTAAGTATGCAAATAGCCACACATTTTAACACAAAATCATACAGGAAGTG
TTACAGAAAGTATTTCGATGTAATTAGCCACATATTTAGCACAATACCCC
AAAATTTCATAACTGCAGCTTTTTTACATGGTGAATAAAGTCAGTACGTA
AAATGCCTGTTGAAACGTTTTTCCTCAAGTCAAACATCACAATTGCAAGG
AGTATTTAGCCACTTAAATTCACGTTTCTGATGCTGTATCCTTTTAGAAA
ATGAAAACAAAACCATTCAATAGTATCATCTCAAGCAAAAAACTTTCAAA
TTCCACGATTAGACTTTTTTATTCAATACTTTTGTCTCTGGGTGCATTTT
AAGTCTATTAACCACATTATTTCACTTTCAAGGATCAATAAGCCCACGTT
TTTTCACATAATCTCAAAATTTTATTATTCAATGTAACCTGTGCAAAATT
TGGGTGACTGATCTTTTAAATTGAAGTTGCTACACCTTTTTGAAATTAGT
TGGTAGAATTAGCCACTCAAAAAATTAGCCACAATCTTGCACACACTTTA
AAGGCTAATTACTAGCCACTGAAGATCACTAAAAATTTCGTTTCAAATGC
TAAAGAAATTTTTGTCATTTTGGGACATGGGAATTAATTTTTTAAACTGT
AGCCACAAAATATAACATTTTATAGGCTTTTTAAAATCATTACTAAAAAA
GTTGAATTATGTCATTCTTTTTTGAACACGATCAGCTTATTTTCTTATTG
AATCGATTAATTGATTTAAATTAATAGAACAAACATGGATGCATGGTAGA
ATTATTTCTTTTAGGAGACAATTCAAATGAGAAATTGAAACTTCAACAAC
AAGAAGCCACACGCAGAGAAAACGTTTTGCTGATGAGGCTTGCAACTAAA
GAACAAGAAATGCAAGAACTATTGGTATATCAATCTTGACTCAAAAATTT
TGTTCAATTTTGTTATTAAATCTGATTCCTATCTTATTTTGTCCTCCCAT
TTTGCAAATTACAGTTGCAAATATCAAGTTCTTTTCATAGTAATTAAGAA
AATAAAGCCAAAAGATCTGTAACTGAAGTAAAAAAAAGCACTTTAGAATT
ACTCCTGTCTGATCCTGTGGTAATAACTTTTATTAAAGTAGTATGAATAA
ATGGGTTTTGAGGCTTTTCATTAAAAAAATATCTGTTCTGCTTTTAGAGT
CAAATCCAAGAGCTTAAAGAAAAGCAAGCACCATCCACTGCCCAACTTCA
ATCAATGCTTATTGACCCTGCTGTTAATTTACTATTTGAAAAGATGAAAA
CAGAACTAACAGAGACTAAGGACAGACTTGAACAAGCACAAAATGATCTA
AGTGCATGGAAATTCACTCCAGACAGGTAAAGCGAAAAACTTCGATGAAA
TGATGTGAAATGTTTATTGGTGTAAACTGATACAACAAGGCTTCGTGGCA
AGAGCAGTCTTAATGACATTCAAAGGAAAGACAATACCTTGCCTTAGTTG
AAAACTATTACTCACCAACCTGTATCAGCACCAAACATTTTGTTTTTTAC
TTTTAAGAACTCATTCGAGTTGATTATTTGGGAATAAGGACCTTTTGCCA
CTATGGCCTTTAACAGACTCTCTGATGAGACTATTATAGACTATATTATA
AGGAATCAGACTTACTCCTCAATGACATAAAGTGACAATAAACAATGACA
AAATAATGCAGTGTTTCCTTTTAAAAGGTCGGTTATTTTTCAATTCATCC
TTGCAATTTGGCCAATGTTAAATGGATATGTTTGGGTTGTTATATTGAAA
GGAGTCTTAATCAGCATTATGAAAATCAGAAGGTTTACATATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043458XLOC_043458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069793-exon-scaffold_508-1575043694:106497..106782TCONS_00069793-exon-scaffold_508-1575043694:106497..106782Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1575043694:106357..106403TCONS_00069793-exon-scaffold_508-1575043694:106357..106403Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1575043694:103309..103418TCONS_00069793-exon-scaffold_508-1575043694:103309..103418Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1575043694:102388..103035TCONS_00069793-exon-scaffold_508-1575043694:102388..103035Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1510915933:106497..106782TCONS_00069793-exon-scaffold_508-1510915933:106497..106782Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1510915933:106357..106403TCONS_00069793-exon-scaffold_508-1510915933:106357..106403Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1510915933:103309..103418TCONS_00069793-exon-scaffold_508-1510915933:103309..103418Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1510915933:102388..103035TCONS_00069793-exon-scaffold_508-1510915933:102388..103035Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1491911889:106497..106782TCONS_00069793-exon-scaffold_508-1491911889:106497..106782Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1491911889:106357..106403TCONS_00069793-exon-scaffold_508-1491911889:106357..106403Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1491911889:103309..103418TCONS_00069793-exon-scaffold_508-1491911889:103309..103418Clytia hemisphaericaexon
TCONS_00069793-exon-scaffold_508-1491911889:102388..103035TCONS_00069793-exon-scaffold_508-1491911889:102388..103035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_508supercontigscaffold_508:102388..106782 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.5092	26.7349	15.2321	10.9171	40.5039	29.5007	30.0708	34.7775	14.1812	15.565	16.8288	12.6606	11.6894	13.6617	7.90424	11.0372	13.677	13.1066	7.50439	8.43996	15.5595	14.9243	28.6679	27.5661	10.8996	15.841	13.2241	9.8239	12.7746	17.1713
Blast
[Close]
BLAST of TCONS_00069793 vs. Swiss-Prot (Human)
Match: FL2D (Pre-mRNA-splicing regulator WTAP OS=Homo sapiens GN=WTAP PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 8.611e-41
Identity = 80/143 (55.94%), Postives = 102/143 (71.33%), Query Frame = 3 
Query:  222 PPRVILSSEEKATISKSVLLEKWERQEEYIDHLLSKSGD-NSN---------EKLKLQQQEATRRENVLLMRLATKEQEMQELLSQIQELKEKQAPSTAQLQSMLIDPAVNLLFEKMKTELTETKDRLEQAQNDLSAWKFTPD 620
            P +V LS  +   +++  L+ +W++ E Y+  L  K  D NSN         EKLK QQQE+ RREN+L+MRLATKEQEMQE  +QIQ LK+ Q PS AQL+S ++DPA+NL F KMK EL +TKD+LEQAQN+LSAWKFTPD
Sbjct:    8 PKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
The following BLAST results are available for this feature:
BLAST of TCONS_00069793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FL2D8.611e-4155.94Pre-mRNA-splicing regulator WTAP OS=Homo sapiens G... [more]
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