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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069790 ID=TCONS_00069790|Name=TCONS_00069790|organism=Clytia hemisphaerica|type=transcript|length=2774bpRun BLAST on NCBI protein sequence of TCONS_00069790-protein >TCONS_00069790-protein ID=TCONS_00069790-protein|Name=TCONS_00069790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp MTDSVKNLVLNDNKMLGPPTASFPAVNSQQRISGSDKNARKGSRSKVALKRun BLAST on NCBI transcript from alignment at scaffold_508:60801..78639- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069790 ID=TCONS_00069790|Name=TCONS_00069790|organism=Clytia hemisphaerica|type=transcript|length=17839bp|location=Sequence derived from alignment at scaffold_508:60801..78639- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_508:60801..78639- >TCONS_00069790 ID=TCONS_00069790|Name=TCONS_00069790|organism=Clytia hemisphaerica|type=CDS|length=27216bp|location=Sequence derived from alignment at scaffold_508:60801..78639- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069790 vs. Swiss-Prot (Human)
Match: NB5R4 (Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R4 PE=1 SV=1) HSP 1 Score: 370.163 bits (949), Expect = 1.313e-116 Identity = 222/570 (38.95%), Postives = 306/570 (53.68%), Query Frame = 2
Query: 512 MLGPPTASFPAVNSQQRISGSDKNARKGSRSKVALKPGRSLMDWVRLANGGKDIQGLSGKTVTVTPSELAKHNTVSDCWMAIRGRVYNVTHYMEYHPGGLDELMKGAGKDATELFDQIHKWVNFTSMLAKCYIGP-------LKPYSIEQK-----LMKRKLKTSTVKKDADGFVAPGKLIPTKPTEIVPRYDWYEKEEKIFLSIYTKTKLIDSTDIILDCHDEQSLKITILMGEKFYLLFIRLQHEVS---TVQVTSVNGNKADFVLTKSDSTLKWTQLGKGLDKHDTVQTDADREIIFRDCTVKEINQITHDTKSYTIHLPDKVYYEVPIGHHVIIKDDIEGMEMRRNYTVCLPS-LTAVKRENKDRGTTIDLIIKHYSDGALTPLLNRLNIGDRISMSDCIGTFKRQRLKDANNVYMIAAGTGITPMLRIINYYFIEEAIPNCR-LKLFFANKKEVDIIWKDQFDSLALKYPDRFHVTYILSNPNQAWRGLKGRITADLLKAFVTENPFTVQTNSISTPSILTEETILKGLDK---LYAICGPDQFTNSMESLLNGMDVEKEIIHCF 2161
ML P+ SFPA SQQR++ G RSKV LK GRSLMDW+RL GKD+ GL G+ + VT EL KHN DCW+ IRG VYNV+ YMEYHPGG DELM+ AG D TELFDQ+H+WVN+ SML +C +G LK Y E+K ++ + T T+ K+ + P YDW++ + + ++IYTK K I+ II+D H S + ++ + YL+ I L HEV +V+V G K + VL K ++T W LG L H+++ D + +R C + +THDT+ + + LP + +VPIG HV +K I G E+ + YT S L+ K I +IK Y G TP L+RL IGD +S+S G FK + ++ +++++AAGTG TPM++I+NY + IP+ R +KL F NK E DIIW+ Q + LA K R V ++LS P W G +G I+ LL F+ N LDK L ICGP FT LL+ ++ K IH F
Sbjct: 1 MLNVPSQSFPAPRSQQRVAS-------GGRSKVPLKQGRSLMDWIRLTKSGKDLTGLKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRMAIKPAVLKDYREEEKKVLNGMLPKSQVTDTLAKEGPSY---------------PSYDWFQTDSLVTIAIYTKQKDINLDSIIVD-HQNDSFRAETIIKDCLYLIHIGLSHEVQEDFSVRVVESVG-KIEIVLQKKENT-SWDFLGHPLKNHNSLIPRKDTGLYYRKCQLISKEDVTHDTRLFCLMLPPSTHLQVPIGQHVYLKLPITGTEIVKPYTPVSGSLLSEFKEPVLPNNKYIYFLIKIYPTGLFTPELDRLQIGDFVSVSSPEGNFKISKFQELEDLFLLAAGTGFTPMVKILNYALTD--IPSLRKVKLMFFNKTEDDIIWRSQLEKLAFK-DKRLDVEFVLSAPISEWNGKQGHISPALLSEFLKRN-----------------------LDKSKVLVCICGPVPFTEQGVRLLHDLNFSKNEIHSF 519 The following BLAST results are available for this feature:
BLAST of TCONS_00069790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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