TCONS_00069785 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069785
Unique Name	TCONS_00069785
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3650

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_508:51190..54891-

transcript sequence

>TCONS_00069785 ID=TCONS_00069785|Name=TCONS_00069785|organism=Clytia hemisphaerica|type=transcript|length=3650bp
AAGGAAAGCAAAACCTACCAGCTTGCCAGATATAAAATGCTGTGACTGGC
AGCAATAAGTCAAGTGAATGTATGATTGATCCACAAGaccatgaaaaata
tatttgagtTGAGTTAGAGAGCTCCTTCCTCTGTGGTGACTTGATGTTAA
CTGAAGAAAAGTGTGAGTGTGCACTATTTAAGGCCACATTAAGGAGATAA
AATAACTAATCATATATGATAAGATTATCTCTATAATaatagaaaatgta
aacaaatgaaCTGTTCTACAAATTGTCATCATGGAGATAATATGATATTG
AAACAAAATTGTAATTTCTCATAATATTGAATAAAATTAGGGCAATGCCC
GCTACACTCCCCCACGAAATAGAGAGTAAACACCAAACATTGAGTCCATT
GACATAATTAATTATTGAAACAATCATTCAGTTCTTTGGACCAATCAATT
TCCTCAATTCGATGGATAACAACCAAGCTACGCGCTGATCGTGTTGTAAT
CCTTTTACAATTTTCACTTGCGTTGTGGTATCGAATTTTTAAACGACGGA
TTTGATTATCTCGGCTACGTTCAACTTCATCAACCATGCCATATTGATAG
GTATTGGATAAAACTGATTCCTGTTTTGTAAATAGAACTACATCACCAAT
ATTAATATCAGTGTCAGAGTTGAACCATTTGGGACGCGCAACGAGGCTTG
GCACATGAGTTGTAAGCCAGGCGTCAAACCATGAGTCGAAGATCTTTTGA
TTGTCGCGGATCAGTTTGATATGATCATTTTCAGCGGTTAATCTCCCTGT
TGGACTTCGTTCATTGTTTCTGCCCAAAAGGAGTCGGTTAGGGGTGATAA
GATCAGCCATTTCAACATCTGATTTTATGTTGTTGACTGCGATTGGCATG
TTGTTGATTGAGTTGCTGATTATTGACGCCATTGTTTCCCATTGGATAAT
TGACAGGCGGTGGAGCTGCAAATTTTTGTCGAGTGAATTTCGAACAGACT
TGATCTTTCGCTCTACTCGCCCATGCATATTATGCCCTCCAACAGGACAT
GTTTGAAATTCCAAATGTACATCCTTGTGTAGTTGTTGCTGAATGTCAGT
TATGTCGAACTTCATTGTTTGGCAACCCTTCACTAATTGCCCACCTTCGT
CAATTAGCAATTTTGATGGATAACCAAATTGACAGGAAAAGCGTGTGAAT
GCTTGAATGAATGATGGTGCTGCATAATCCTCCATCACTCTGATGTTGAC
ACTTGTTGTAGTCGCACAGCAGAACACAAGAAGCCATACTTTAACAGTTG
TTCTCTTGTGATGTTGAGAAAAGGCTTGAAAAGGTCCAGCAAGATCGGCT
TGTGTGATGAAAAAGGCTGGTGCAATGCATAAGTTGTCCATTGATAATGG
ACCCATTTCAATGTTGAGGGATTTCTTCATTATGTAACGACAACGCTGAC
AGAAAGATCGCACATCCTTTACTAATGATTTACCATCAATGATAAGTGCT
TTTTGAAGAACATTTCGCCAAGTTGTTTCATTCCCAGAATTTTTGGCGGT
CGGGTGATGCCAATGGATATCATTGACAATGCTGATGGCAATCGGTGAGA
GCTTTTCCACAAGGGGAACACAAAATGTCGTGGACTTCAGATCCTTCATT
GTTTTTGTCAAGTTGCCCAGAACAGTGATTGAATCTGTTGACAATATACG
TCCAATGTGGATAAGTATGCCATCCTTTTCCATTGATATCTTTTTGTACT
TTGATCGGTCTGTGAAATGCTTGATTTCCTTTGTTGCCTTTCGGAAGAAG
TACTTTTCTGAATGACAAAGTTCATCTTCTGTTAGTGATGGACTAGGTGA
TTTCTGTTTGAACACATGTACATTAATGAATCGAAGTACATATGCCATAA
TTCGGACAACTTTTGAAAACCGATGACTGTTGGGATCGACCAAGTGACCA
GAGAATCGATATCTGGCTTTGGTGTTATTGATAAGTTTCTGATTGAGATG
ACAGGATGGTGTTACTTCTTGTTTGACCTCCTTTTGAACCTCCGCCAGTT
GGCTGTTGGTTAATGTTATTTCCCCCATTGTCTTTGAAGGGAAGGATGTT
GAGGATTGCTTCATCCATGGATAGTCAGTTGTCCAGACAGATGATTGGTC
CACTTCTTCGACTGATGTGCATCTTCGTGTACCAATATCAGCAATCATGT
CATTTGTTTGTACGTATACCCACTGAGATGATGATGTCAGTCTTTTGATC
TCGTTGACTCTATTTCGCACCCATTGTTTGAGTTGAATGGTTGGCTTGGT
GATCCAATAAAGCACTATTTGAGAGTCAGTGAATTTGACTGATGTTGCGT
GTTGAAATGATTTCCTGACAACTTCTCCTGCATGCGTATTGACCAATGCT
GCATATAACTCAGCACGAGGCTGTGTCATTTCTTCTGGCACAAGGCGACT
TCTGGCAAATACCAATTGACATGAGTAGCTTCCATTTGTCAGTTTAAATC
TTGCATAAATTGCAGCACAGATGAGATTTTCACTGGCATCTCCGAAGTCT
AGAGTGTTGATCTCTAGATTGGAAGCATCAGATGGGACAGCAGCACGTTT
GAATTTGATTGTCTTGATTTCTTGAAGCATTTCAAAATGAGATATCCATA
CATTTCGTAGACTATCTGGTAGTGCGTCATCCCACTCCATTCGCCTCAGG
ACAAGTTTGTGTAGATCAACTTTCAGTGTGGCTGTGATTGGGGTGACAAG
GCCAGCAATATCGAAAACCTCTGCTACTTTTGACATGCATTGACGACGGG
TCAATGCTTGTGGAActtctttgatttgttttggtttctttCCACGGTac
tttttggcaaaattgaTTTCAGGATTGTCAATACTGATTTCATCTGCTTC
TGGAAACCATTTCATCCCAGCAACAGATACAGACTCTCCATCACTTGACA
AAGATTGTTTTGGTCTTTGATGCGAAAATGTGAAGCCTTTCAGGTGGAAT
CCTCCATGGTTGACTACTAGCTCAAGGTCGTCAGCAAGTTTGAATGCCTT
ATCGATAGTTTCCTCTCCAGTCACACAGTCATCGACGTACACATCTTTGT
TAATGATTTGATGAACCTTTGGGTGGTGCTCCTTGAAGAGGTTTGCTGTC
TCACGTAATGCTCGTTCAGATTGGTTTCCGCTTGACTTGATGCCATAAAT
GAGggtttttataactttttcttCGGGTGGCTTGTTTGGATCAAACTCAT
CTTGCCAGAGATAGCGTTGTAGGCACCATTGTGATTTGTCCAATTGAACT
GAATTATACTATATAATTATAATCTTTGCCACATCTGTATGTATTCCAAT
GTAGTGACTCCTCCACCTGATGAACAATTCCACAAGTttgttcatgttgt
ttcttcCCTTTGCAAGTAGATCATTGAGTGATTTACCAAAGTCAGTTTTC
ATTAAGGCGTCAAACACGACTCGGCATGGAGTAGAAATTGAATTTTCCTT
CCATACTGCTCGCCATGGGATGAAGTTCTTGATAGGACTCTGATGCAGTT
GTTGTTGAACATCACTTGGAAGATTCTTTACATATTCTACATATCCCAGA
TCTTGAAGTTTCTTCTCAGATTTCAGCGCATCTGCCTTGTCATCGGGGTA

Run BLAST on NCBI

transcript from alignment at scaffold_508:51190..54891-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069785 ID=TCONS_00069785|Name=TCONS_00069785|organism=Clytia hemisphaerica|type=transcript|length=3702bp|location=Sequence derived from alignment at scaffold_508:51190..54891- (Clytia hemisphaerica)
AAGGAAAGCAAAACCTACCAGCTTGCCAGATATAAAATGCTGTGACTGGC
AGCAATAAGTCAAGTGAATGTATGATTGATCCACAAGACCATGAAAAATA
TATTTGAGTTGAGTTAGAGAGCTCCTTCCTCTGTGGTGACTTGATGTTAA
CTGAAGAAAAGTGTGAGTGTGCACTATTTAAGGCCACATTAAGGAGATAA
AATAACTAATCATATATGATAAGATTATCTCTATAATAATAGAAAATGTA
AACAAATGAACTGTTCTACAAATTGTCATCATGGAGATAATATGATATTG
AAACAAAATTGTAATTTCTCATAATATTGAATAAAATTAGGGCAATGCCC
GCTACACTCCCCCACGAAATAGAGAGTAAACACCAAACATTGAGTCCATT
GACATAATTAATTATTGAAACAATCATTCAGTTCTTTGGACCAATCAATT
TCCTCAATTCGATGGATAACAACCAAGCTACGCGCTGATCGTGTTGTAAT
CCTTTTACAATTTTCACTTGCGTTGTGGTATCGAATTTTTAAACGACGGA
TTTGATTATCTCGGCTACGTTCAACTTCATCAACCATGCCATATTGATAG
GTATTGGATAAAACTGATTCCTGTTTTGTAAATAGAACTACATCACCAAT
ATTAATATCAGTGTCAGAGTTGAACCATTTGGGACGCGCAACGAGGCTTG
GCACATGAGTTGTAAGCCAGGCGTCAAACCATGAGTCGAAGATCTTTTGA
TTGTCGCGGATCAGTTTGATATGATCATTTTCAGCGGTTAATCTCCCTGT
TGGACTTCGTTCATTGTTTCTGCCCAAAAGGAGTCGGTTAGGGGTGATAA
GATCAGCCATTTCAACATCTGATTTTATGTTGTTGACTGCGATTGGCATG
TTGTTGATTGAGTTGCTGATTATTGACGCCATTGTTTCCCATTGGATAAT
TGACAGGCGGTGGAGCTGCAAATTTTTGTCGAGTGAATTTCGAACAGACT
TGATCTTTCGCTCTACTCGCCCATGCATATTATGCCCTCCAACAGGACAT
GTTTGAAATTCCAAATGTACATCCTTGTGTAGTTGTTGCTGAATGTCAGT
TATGTCGAACTTCATTGTTTGGCAACCCTTCACTAATTGCCCACCTTCGT
CAATTAGCAATTTTGATGGATAACCAAATTGACAGGAAAAGCGTGTGAAT
GCTTGAATGAATGATGGTGCTGCATAATCCTCCATCACTCTGATGTTGAC
ACTTGTTGTAGTCGCACAGCAGAACACAAGAAGCCATACTTTAACAGTTG
TTCTCTTGTGATGTTGAGAAAAGGCTTGAAAAGGTCCAGCAAGATCGGCT
TGTGTGATGAAAAAGGCTGGTGCAATGCATAAGTTGTCCATTGATAATGG
ACCCATTTCAATGTTGAGGGATTTCTTCATTATGTAACGACAACGCTGAC
AGAAAGATCGCACATCCTTTACTAATGATTTACCATCAATGATAAGTGCT
TTTTGAAGAACATTTCGCCAAGTTGTTTCATTCCCAGAATTTTTGGCGGT
CGGGTGATGCCAATGGATATCATTGACAATGCTGATGGCAATCGGTGAGA
GCTTTTCCACAAGGGGAACACAAAATGTCGTGGACTTCAGATCCTTCATT
GTTTTTGTCAAGTTGCCCAGAACAGTGATTGAATCTGTTGACAATATACG
TCCAATGTGGATAAGTATGCCATCCTTTTCCATTGATATCTTTTTGTACT
TTGATCGGTCTGTGAAATGCTTGATTTCCTTTGTTGCCTTTCGGAAGAAG
TACTTTTCTGAATGACAAAGTTCATCTTCTGTTAGTGATGGACTAGGTGA
TTTCTGTTTGAACACATGTACATTAATGAATCGAAGTACATATGCCATAA
TTCGGACAACTTTTGAAAACCGATGACTGTTGGGATCGACCAAGTGACCA
GAGAATCGATATCTGGCTTTGGTGTTATTGATAAGTTTCTGATTGAGATG
ACAGGATGGTGTTACTTCTTGTTTGACCTCCTTTTGAACCTCCGCCAGTT
GGCTGTTGGTTAATGTTATTTCCCCCATTGTCTTTGAAGGGAAGGATGTT
GAGGATTGCTTCATCCATGGATAGTCAGTTGTCCAGACAGATGATTGGTC
CACTTCTTCGACTGATGTGCATCTTCGTGTACCAATATCAGCAATCATGT
CATTTGTTTGTACGTATACCCACTGAGATGATGATGTCAGTCTTTTGATC
TCGTTGACTCTATTTCGCACCCATTGTTTGAGTTGAATGGTTGGCTTGGT
GATCCAATAAAGCACTATTTGAGAGTCAGTGAATTTGACTGATGTTGCGT
GTTGAAATGATTTCCTGACAACTTCTCCTGCATGCGTATTGACCAATGCT
GCATATAACTCAGCACGAGGCTGTGTCATTTCTTCTGGCACAAGGCGACT
TCTGGCAAATACCAATTGACATGAGTAGCTTCCATTTGTCAGTTTAAATC
TTGCATAAATTGCAGCACAGATGAGATTTTCACTGGCATCTCCGAAGTCT
AGAGTGTTGATCTCTAGATTGGAAGCATCAGATGGGACAGCAGCACGTTT
GAATTTGATTGTCTTGATTTCTTGAAGCATTTCAAAATGAGATATCCATA
CATTTCGTAGACTATCTGGTAGTGCGTCATCCCACTCCATTCGCCTCAGG
ACAAGTTTGTGTAGATCAACTTTCAGTGTGGCTGTGATTGGGGTGACAAG
GCCAGCAATATCGAAAACCTCTGCTACTTTTGACATGCATTGACGACGGG
TCAATGCTTGTGGAACTTCTTTGATTTGTTTTGGTTTCTTTCCACGGTAC
TTTTTGGCAAAATTGATTTCAGGATTGTCAATACTGATTTCATCTGCTTC
TGGAAACCATTTCATCCCAGCAACAGATACAGACTCTCCATCACTTGACA
AAGATTGTTTTGGTCTTTGATGCGAAAATGTGAAGCCTTTCAGGTGGAAT
CCTCCATGGTTGACTACTAGCTCAAGGTCGTCAGCAAGTTTGAATGCCTT
ATCGATAGTTTCCTCTCCAGTCACACAGTCATCGACGTACACATCTTTGT
TAATGATTTGATGAACCTTTGGGTGGTGCTCCTTGAAGAGGTTTGCTGTC
TCACGTAATGCTCGTTCAGATTGGTTTCCGCTTGACTTGATGCCATAAAT
GAGGGTTTTTATAACTTTTTCTTCGGGTGGCTTGTTTGGATCAAACTCAT
CTTGCCAGAGATAGCGTTGTAGGCACCATTGTGATTTGTCCAATTGAACT
GAATTATACTATATAATTATAATCTTTGCCACATCTGTATGTATTCCAAT
GTAGTGACTCCTCCACCTGATGAACAATTCCACAAGTTTGTTCATGTTGT
TTCTTCCCTTTGCAAGTAGATCATTGAGTGATTTACCAAAGTCAGTTTTC
ATTAAGGCGTCAAACACGACTCGGCATGGAGTAGAAATTGAATTTTCCTT
CCATACTGCTCGCCATGGGATGAAGTTCTTGATAGGACTCTGATGCAGTT
GTTGTTGAACATCACTTGGAAGATTCTTTACATATTCTACATATCCNCAG
TTGTTGTTGAACATCACTTGGAAGATTCTTTACATATTCTACATATCCCA
GATCTTGAAGTTTCTTCTCAGATTTCAGCGCATCTGCCTTGTCATCGGGG
TA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043455	XLOC_043455	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069785-exon-scaffold_508-1575043694:51302..54891	TCONS_00069785-exon-scaffold_508-1575043694:51302..54891	Clytia hemisphaerica	exon
TCONS_00069785-exon-scaffold_508-1575043694:51190..51249	TCONS_00069785-exon-scaffold_508-1575043694:51190..51249	Clytia hemisphaerica	exon
TCONS_00069785-exon-scaffold_508-1510915933:51302..54891	TCONS_00069785-exon-scaffold_508-1510915933:51302..54891	Clytia hemisphaerica	exon
TCONS_00069785-exon-scaffold_508-1510915933:51190..51249	TCONS_00069785-exon-scaffold_508-1510915933:51190..51249	Clytia hemisphaerica	exon
TCONS_00069785-exon-scaffold_508-1491911889:51302..54891	TCONS_00069785-exon-scaffold_508-1491911889:51302..54891	Clytia hemisphaerica	exon
TCONS_00069785-exon-scaffold_508-1491911889:51190..51249	TCONS_00069785-exon-scaffold_508-1491911889:51190..51249	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_508	supercontig	scaffold_508:51190..54891 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.689801	0.853456	0.425912	0.439911	2.93636	2.43062	2.42823	2.58952	1.19378	1.25994	1.45642	1.25808	1.29505	1.32509	0.926985	1.36256	1.51507	1.8427	1.06612	0.777087	1.37242	1.55714	0.523413	0.688208	2.28921	2.14627	0.729777	0.653691	0.903992	0.723206

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_dom
IPR008042	Retrotrans_Pao
IPR001584	Integrase_cat-core

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00069785 vs. Swiss-Prot (Human)

BLAST of TCONS_00069785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00069785 (transcript) - C. hemisphaerica