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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069783 ID=TCONS_00069783|Name=TCONS_00069783|organism=Clytia hemisphaerica|type=transcript|length=1355bp
CGACAGGGTCTGACTGTTGCATGGAGGACTAAAAAGACTTCACATTGTTT
GGTTTTATCAGAAAATAAGAAACAACAAGCGCCACAGTCAAAACACCAAT
CCGACCAATTACCAAACTTCCCACCACCTGCACCACAAATACGCACCCAA
AGAAATCCAGAACTGTTTTCACCAAGAAGCAAATCAATGAATTGGAAAGT
GTATTTTACCAGAAGCGATATCTGACCATTAAAGATCGTGAAGAATTATC
GAGAAGATTGACGCTGACGGAAAATCAGGTGAAAGTCTGGTTCCAAAACC
GACGTAACAAATGGAAACGAGAAATGAGTTTCAAAGTGGAATTTGCCAAA
TTCAACATGGTGCCCAACCCCTTGAACATGGGTAGAGGTGTAGATGGTAC
TTTACCGAACAATCTTATGTTGCCCACAACAACTACGTCACCGACAGAAA
CATCGGATTTTCAAATGACATCACATCGTTATGAGGGATATGCATACCGT
AATGCATTCCAAGACAGTTATTATAATCCATATCCAAACGTGTTCAACAA
CCAGGACACACAAAACCAACATAATTATTCACCACTTTCAAACAGCAGTA
GTAATAACGAAGTCTCCTATCAAGACAACAACACTTCTATGCCTCAAACT
TCGGTTGCTTTGGAAACATACGACACCAACTCCATTGTTTACCCACCCCC
ACCACCACCGCCGCCAGCACAACCACCACAACAATCGGTAGCGCAAAACA
TGACGGACTACCAAAATCAGCAACATCATGCTATTTATTCACACTACAAC
AACTGCGACACTCAATATGACACAACAAAATACCAAGGAATGGATCAACA
AATCCCCTCCTCGTACGACATTCACAACTATTCACCAACCGGTCAAACAA
GCTCATACACATCACACAGATACACTGATGAAGCAACGCAACCACAAACC
GACCCCATCACATCTCAAATATCCCCTTTAGTAGCCAAATACACAGATGA
ACAACAACAAGCTTCACCTTACGAAGCGTGCAAGTACACAGAACACAACC
AACAAACTACTTCATACACGCCCAGACTCACGCCCATGGTTCCCACAACA
TCAGGGCGTGAAATGTACACTGATAATACAGGTGTTGTTTACACTACATT
AACTGATTACAGAAACAGTAGTGAAAACCAAACCTTAAACTTGCCCAATC
CACAATTTACATTCGGCAGTCACTATTGAAGGAAAGATGCTTTCATACAc
gtcaaaaaaaataatagttcttagtttttatgtattttaagtatttttgt
aaATTGTACATAGACATGAAtgagttttattttcatttttatcacgCATT
AATAC Run BLAST on NCBI transcript from alignment at scaffold_508:133125..138189+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069783 ID=TCONS_00069783|Name=TCONS_00069783|organism=Clytia hemisphaerica|type=transcript|length=5065bp|location=Sequence derived from alignment at scaffold_508:133125..138189+ (Clytia hemisphaerica)
CGACAGGGTCTGACTGTTGCATGGAGGACTAAAAAGACTTCACATTGTTT
GGTTTTATCAGAAAATAAGGTAGACCGCTATCACCTCTGGGGCATCAAAG
CATTTTGCAAAGGAAGACTTGGCAGATGTTAGAAACGCTATTCTGAAGAA
CCATGATTGTCGATTTCTCTTGTCATTGCACAGAATGCCAGTCATACTGT
AGTGTATTTTGAAAATAGGCGTCTACTGAAGTTTTCATCGATTCaaagat
ttttataaattttatcggattttcaaagttttcagcATTTTTCGAAGTTC
TCGATAATAAACAAAGTCGAAACATAACATAACAAATcatatttttcaag
attttaattttttttttcaagatttcaaagctttttccataaaattcGTC
ATTTTCAATGCTCTTTGACATGAACCGAAGTTGTTTAGCGGATATTTTgc
gtgtttttttatattaaaagGATACGGAAGGACGTGGTCATTATCAACAA
TTTAGACGTCCAAACCGCAAAAATGTTGTCACAGGTCACTTTTGTTATGC
CAAAAGCAATTTTGTTTTTGGCAACTTTTCAGTGACACACGCACACACAT
GTTTTATCAATATCGATGcagatgaaataaaaatatatttctccAGAGAA
AATCagccattgttttttttttcaaaaaattcaaaaaatgaattgtTCAA
AAAGCTAAAAGGATATTTAGATACCTTATcggtcctttttacgccggccc
ttatttcgccacagcctaattttgggcttacgccaataagggccgtaaat
aacgtcaaaatttgtaaacatcgctattcaggcttcaaaacagtaagtat
taactaaaatttacattaaaatgtcatctttcagtattaaactgttgaaa
attccattaaAAATCATTGGTTGTCGTGAAGTTTTGGACATAGAGTGAAA
GTTTTTGGAGTTATATAAGTTACATAGAGTTTCATCCTTTAATCATGcct
aaaattctttaaattgagaaaaaatggtcaagtgaaaattacaaaatttt
ggccctttttatgCCTGCCCTTATTACGCcgcgagcccaaaaataacgcc
aataagggccggggtaaaaagggccgataaggtagtttgaaatatttttc
catagATTTCTTCCATGATTTTAGAAATTTGGAAATGTCACTtctgtcat
tttattttttgaaaacgaaaggattttgagatttttgctcAGGACCATGG
AATAATTTACAATCAAAATATCTCTAACTATCTGATTATTCCTTTAAGCA
TTGTTGTAAAGATAATTCACTGTGACAAGGAAGAAGTGAGGTTTATTTTA
ACCaatgaaatttttcgaaaacgaAAATTATCAAGAACAGCGCAAATTTT
CTTATCTAATTTAAAGCGTTTAAAAGATCAGAATCGTCTAGAAAGTGGAA
ATTagggagaaaataaaaaatatctaaaaataaaatatttactcacttaa
aaaactttttctaaaactaaaactaatttgaaattgaaatttaactTCTT
GGGAAGGAATGAagattttctcgatttttttttgctggaaaacCTTTAAT
CCTCGGTTAGACACGTATTGGCAATCCAAGCGGTAAGATGAAAGAAACTT
TACAAACTCGAAAGATTGTTATTGTGCTAATTGGCATGGCAGAGAATTTG
GTATTTAATTGAAGTGCAGAGAAGCACCACGTAACAATTCTTGATTGATC
AATCAACTTCTCAACATGATGATGTTTTTCCACTTTCTTTATGCAACTAG
ACAAAACTACTTAAAGATCTTTCAACAGATAAAGCGACAGTACCAGAATT
GAAAACAGTTTCGAAAATGCAGTGCAACTTGTAGAAGATGTAAAATGTGA
AAATAGAAAACCGACAACGAATGGCTGCATGTAACTAAAtgaataaacat
aaaaaattatttgaaatattcTGAAAATTATCATATCATGATATTATATT
GATACAATCTTCAAATCATTATCCCTAATACTGGGTGGTGTCCCGGGGAG
GGGGCAGTCGATTAGTAAACGACCGTAGACCGTAAGTTACTCCAAGGTCC
CGAATAAACCTCCCAATCCGGTTATCAATTTCCAATAATTTTCGCATCCC
CACGTTCTTATAATAAGGACCCCTTCCCGTatattcatttttgaaaatat
tttcaggacACCCTCAAATAATTTCGGACCCCCCTATTCGGGATCTTATT
ATTCAAAAAGGTGATATAATTTTGAGACAGATTATAAGCTGATCTTAttc
tgaaaaagtttttatttaactaagtcatttttattaaaaaattccaagaa
AACTGAAATTCCTTCCACGGTTAATTAGGCTAATAAGCCTACATTAGTGG
TGAATAAAGAATTtcgaaattaacaaaattgaattatttgaaAGATTCCT
CCCCTCCTCTTTGTAATAAGGCAAATTTCACGTGATGGTTAAAATACCAC
TAATGTAAGGGAAACATGCCAGTTTtgattaaaatatttcatagcGAAAC
TGtcttcaaatgaaaaactttaataaaGCTCAGTACCAACTAAAAGATTA
AAAGGTGTGATTGGCCAAAATTATATTGCAAAAATATATTATTAGCGTAG
GACTTCggcgaaaatttctttgaacTGTTAGTGATGTTTAACAAAATGCC
TAAATTTAATTGCTTTTGTAAATCAAGTTACTGGTGAAGTATGCTCAATT
ATACTTCAATCAGTGCGTGTACACATCATGCCAATAAATCTTTATCAGGC
CAATCGCACCTAATTGAACACATTTTCTATAATTTGGCACTCCAAGGCAA
AAACTTTCAGCATTTTGAATCTAAAGCAGCAATCTGAAATGGCATGAATT
TGGTTTAGCTTAACAGTGACCTGTATAATGAGGTATCAATTACAGCTATT
AGCATGTCTAGCCGATGTCTACAAGATTTGAGGGCGGTATAGAGTGACCG
GAATTGTGAATTAGTTGCAAATCTAATAAAAAATGGGAAACGTTTTAATG
CTTGTGTGGTGGTATAGACTGTTGGGTTGAGAGAAAGGAAGCGAgagtta
aaaacaaaacaaccaCGATGTTGGTTGCAGGAAACTCCAACATATTAACA
TTTTACCATAGATTATAGCTTTTTGTAAAGTGTCATTGATCATTGTGCTA
TTGTCCGTATGCTCCAGTGGAAGATAAACTTTCAGTGGGAGGTTGTAGCA
AACTAACCTGCCTATCCAGGGGCTATTGTTTGGTTTTTCGGAGACGACCG
ATGCCTGTAGGACTAGAGGGACAATCCTCAAACCCTCCTTTTGACTGATA
AATTGTAATGCAATAAAAAGATCCCTATAAAGACACTTTATTCCTTCACA
GAAACAACAAGCGCCACAGTCAAAACACCAATCCGACCAATTACCAAACT
TCCCACCACCTGCACCACAAATACGCACCCAAAGAAATCCAGAACTGTTT
TCACCAAGAAGCAAATCAATGAATTGGAAAGTGTATTTTACCAGAAGCGA
TATCTGACCATTAAAGATCGTGAAGAATTATCGAGAAGATTGACGCTGAC
GGAAAATCAGGTATCAAAAATTTCCAATGACAGACAGTGTGCTGTGAAAG
AAGTACACTTGTTTCGACAGCAGATTTTTTAATCTTTGAAATGGGTACTG
TTTTTAGTAAATCCTattccaaatttcaaaatagcatAGAGGATTGTAGC
CTGATTCCATTttggtaccgttggaaagctttttatactctttctaaaGG
CATGCGGTTTATACCCCTTCAAACAACGTGGTCAAGAGCTATGGCAAAAA
TCTTTGAGCTGGTTTTCTGACCTATTTTTGACTCAGACACacgacttttg
ggggactgagGGTTAAAATACACAGTTCTAACAGTTCAGTGTCCAATGAT
TAATACTAAGAAACTTGATTCCTTTTTCCATGTTACAGGTGAAAGTCTGG
TTCCAAAACCGACGTAACAAATGGAAACGAGAAATGAGTTTCAAAGTGGA
ATTTGCCAAATTCAACATGGTGCCCAACCCCTTGAACATGGGTAGAGGTG
TAGATGGTACTTTACCGAACAATCTTATGTTGCCCACAACAACTACGTCA
CCGACAGAAACATCGGATTTTCAAATGACATCACATCGTTATGAGGGATA
TGCATACCGTAATGCATTCCAAGACAGTTATTATAATCCATATCCAAACG
TGTTCAACAACCAGGACACACAAAACCAACATAATTATTCACCACTTTCA
AACAGCAGTAGTAATAACGAAGTCTCCTATCAAGACAACAACACTTCTAT
GCCTCAAACTTCGGTTGCTTTGGAAACATACGACACCAACTCCATTGTTT
ACCCACCCCCACCACCACCGCCGCCAGCACAACCACCACAACAATCGGTA
GCGCAAAACATGACGGACTACCAAAATCAGCAACATCATGCTATTTATTC
ACACTACAACAACTGCGACACTCAATATGACACAACAAAATACCAAGGAA
TGGATCAACAAATCCCCTCCTCGTACGACATTCACAACTATTCACCAACC
GGTCAAACAAGCTCATACACATCACACAGATACACTGATGAAGCAACGCA
ACCACAAACCGACCCCATCACATCTCAAATATCCCCTTTAGTAGCCAAAT
ACACAGATGAACAACAACAAGCTTCACCTTACGAAGCGTGCAAGTACACA
GAACACAACCAACAAACTACTTCATACACGCCCAGACTCACGCCCATGGT
TCCCACAACATCAGGGCGTGAAATGTACACTGATAATACAGGTGTTGTTT
ACACTACATTAACTGATTACAGAAACAGTAGTGAAAACCAAACCTTAAAC
TTGCCCAATCCACAATTTACATTCGGCAGTCACTATTGAAGGAAAGATGC
TTTCATACAcgtcaaaaaaaataatagttcttagtttttatgtattttaa
gtatttttgtaaATTGTACATAGACATGAAtgagttttattttcattttt
atcacgCATTAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069783-exon-scaffold_508-1491911889:133125..133193 | TCONS_00069783-exon-scaffold_508-1491911889:133125..133193 | Clytia hemisphaerica | exon |
| TCONS_00069783-exon-scaffold_508-1510915933:133125..133193 | TCONS_00069783-exon-scaffold_508-1510915933:133125..133193 | Clytia hemisphaerica | exon |
| TCONS_00069783-exon-scaffold_508-1575043694:133125..133193 | TCONS_00069783-exon-scaffold_508-1575043694:133125..133193 | Clytia hemisphaerica | exon |
| TCONS_00069783-exon-scaffold_508-1491911889:136526..136734 | TCONS_00069783-exon-scaffold_508-1491911889:136526..136734 | Clytia hemisphaerica | exon |
| TCONS_00069783-exon-scaffold_508-1510915933:136526..136734 | TCONS_00069783-exon-scaffold_508-1510915933:136526..136734 | Clytia hemisphaerica | exon |
| TCONS_00069783-exon-scaffold_508-1575043694:136526..136734 | TCONS_00069783-exon-scaffold_508-1575043694:136526..136734 | Clytia hemisphaerica | exon |
| TCONS_00069783-exon-scaffold_508-1491911889:137113..138189 | TCONS_00069783-exon-scaffold_508-1491911889:137113..138189 | Clytia hemisphaerica | exon |
| TCONS_00069783-exon-scaffold_508-1510915933:137113..138189 | TCONS_00069783-exon-scaffold_508-1510915933:137113..138189 | Clytia hemisphaerica | exon |
| TCONS_00069783-exon-scaffold_508-1575043694:137113..138189 | TCONS_00069783-exon-scaffold_508-1575043694:137113..138189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_508 | supercontig | scaffold_508:133125..138189 + |
Blast
BLAST of TCONS_00069783 vs. Swiss-Prot (Human)
Match: HMX2 (Homeobox protein HMX2 OS=Homo sapiens GN=HMX2 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.669e-18 Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 3
Query: 150 KKSRTVFTKKQINELESVFYQKRYLTIKDREELSRRLTLTENQVKVWFQNRRNKWKREMSFKVEFA 347
KK+RTVF++ Q+ +LES F KRYL+ +R L+ L LTE QVK WFQNRRNKWKR++S ++E A
Sbjct: 150 KKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215
The following BLAST results are available for this feature:
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