TCONS_00069775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069775
Unique NameTCONS_00069775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069775 ID=TCONS_00069775|Name=TCONS_00069775|organism=Clytia hemisphaerica|type=transcript|length=592bp
cccgaataggggaatttcccatagtcacgtgacaactgagctctattctg
aatttttttattgggattgattccttagtatgtgtgcttgcatccgtttt
ttatttcaagctaatatattttttcgttaagtttttattgagctttttCG
AATCCCGAATGCGAATCCCGAATTCCGAATACCGAATACCTAACTCCAGC
GAATCTACCAATAGGTAAATTAcgatataataataaaaaggagaaaagtt
tagtgtagtaaaaaaattatttataaaatataaaatatggAAAAGATAAT
AACGAAATTGGAAATAAGTTTAACAAAACACCaaaagtcccacctaaaga
aattaataCCCTCCATAACACATATGCTTATATTAAAACCCGATTCTCCT
TGAAAAGTCTATCATTATTTCTGTCAGTTACCGATTTTGATTACCGATAC
TTCTTTCGTTcaaattttccccttttttcagGTACTCGTCTCCCTAAGGG
GGGGGTAGGCAGAAATGGGTGCTGGTGGGTAAGTGCGGACGATAAGGGTC
GTCCCCCCTGGTGAACTCCTACCCATATTTTCTTGAGAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_507:110567..111158

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069775 ID=TCONS_00069775|Name=TCONS_00069775|organism=Clytia hemisphaerica|type=transcript|length=592bp|location=Sequence derived from alignment at scaffold_507:110567..111158 (Clytia hemisphaerica)
ATTTTCTCAAGAAAATATGGGTAGGAGTTCACCAGGGGGGACGACCCTTA
TCGTCCGCACTTACCCACCAGCACCCATTTCTGCCTACCCCCCCCTTAGG
GAGACGAGTACctgaaaaaaggggaaaatttgAACGAAAGAAGTATCGGT
AATCAAAATCGGTAACTGACAGAAATAATGATAGACTTTTCAAGGAGAAT
CGGGTTTTAATATAAGCATATGTGTTATGGAGGGtattaatttctttagg
tgggacttttGGTGTTTTGTTAAACTTATTTCCAATTTCGTTATTATCTT
TTccatattttatattttataaataatttttttactacactaaacttttc
tcctttttattattatatcgTAATTTACCTATTGGTAGATTCGCTGGAGT
TAGGTATTCGGTATTCGGAATTCGGGATTCGCATTCGGGATTCGaaaaag
ctcaataaaaacttaacgaaaaaatatattagcttgaaataaaaaacgga
tgcaagcacacatactaaggaatcaatcccaataaaaaaattcagaatag
agctcagttgtcacgtgactatgggaaattcccctattcggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043449XLOC_043449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069775-exon-scaffold_507-1491911889:110567..111158TCONS_00069775-exon-scaffold_507-1491911889:110567..111158Clytia hemisphaericaexon
TCONS_00069775-exon-scaffold_507-1510915933:110567..111158TCONS_00069775-exon-scaffold_507-1510915933:110567..111158Clytia hemisphaericaexon
TCONS_00069775-exon-scaffold_507-1575043694:110567..111158TCONS_00069775-exon-scaffold_507-1575043694:110567..111158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:110567..111158 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.18066	0	0	0	0	0	0.222985	0.0780585	0.0966881	0.563087	0.0616919	0.308099	0.639785	0.105198	0.112894	0	0.142548	0.0985827	0	0.179122	0.131077	0.106209	0.0965912	0.795632	1.33185	0	0.135555	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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